Wall clock time and date at job start Mon Mar 30 2020 01:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38443 * 120.80553 * 2 1 4 4 C 1.38547 * 119.21912 * 180.29075 * 3 2 1 5 5 F 1.35101 * 119.55638 * 179.74258 * 4 3 2 6 6 N 1.32043 * 120.88077 * 359.72259 * 4 3 2 7 7 C 1.31852 * 121.76710 * 0.02562 * 6 4 3 8 8 C 1.38885 * 120.68563 * 359.97438 * 7 6 4 9 9 N 1.39727 * 120.46842 * 180.02562 * 8 7 6 10 10 C 1.38657 * 120.00096 * 336.59203 * 9 8 7 11 11 C 1.38818 * 120.29584 * 336.37401 * 10 9 8 12 12 C 1.38115 * 120.02107 * 179.97438 * 11 10 9 13 13 C 1.38935 * 120.63054 * 0.03175 * 12 11 10 14 14 C 1.36419 * 120.61160 * 359.97438 * 13 12 11 15 15 C 1.40741 * 119.95468 * 359.97438 * 14 13 12 16 16 C 1.41010 * 120.31513 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99966 * 152.93986 * 16 15 14 18 18 C 1.39909 * 119.99956 * 332.94616 * 16 15 14 19 19 N 1.30897 * 119.99832 * 347.82577 * 18 16 15 20 20 Si 1.86789 * 120.00048 * 167.82588 * 18 16 15 21 21 H 1.48506 * 109.47292 * 59.99846 * 20 18 16 22 22 H 1.48505 * 109.47310 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47450 * 299.99945 * 20 18 16 24 24 H 1.08999 * 109.47271 * 270.24563 * 1 2 3 25 25 H 1.08990 * 109.47118 * 30.25615 * 1 2 3 26 26 H 1.09003 * 109.46839 * 150.25478 * 1 2 3 27 27 H 1.07992 * 120.38492 * 359.97438 * 3 2 1 28 28 H 1.08009 * 119.65633 * 179.97438 * 7 6 4 29 29 H 0.97002 * 119.99802 * 156.60206 * 9 8 7 30 30 H 1.07996 * 119.99235 * 0.25398 * 11 10 9 31 31 H 1.07995 * 119.68173 * 179.97438 * 12 11 10 32 32 H 1.07997 * 119.69497 * 179.97438 * 13 12 11 33 33 H 1.08007 * 120.02369 * 179.97438 * 14 13 12 34 34 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2161 1.1891 0.0000 4 6 3.6010 1.1508 -0.0061 5 9 4.2997 2.3071 -0.0115 6 7 4.2471 -0.0008 -0.0065 7 6 3.6091 -1.1547 -0.0015 8 6 2.2209 -1.1971 0.0048 9 7 1.5495 -2.4224 0.0106 10 6 2.1806 -3.5610 -0.4667 11 6 3.2279 -3.4540 -1.3716 12 6 3.8528 -4.5919 -1.8429 13 6 3.4436 -5.8508 -1.4208 14 6 2.4171 -5.9859 -0.5325 15 6 1.7632 -4.8431 -0.0351 16 6 0.7010 -4.9740 0.8830 17 1 0.4895 -4.1776 1.5812 18 6 -0.0789 -6.1355 0.8896 19 7 0.0145 -6.9921 -0.0959 20 14 -1.2533 -6.4640 2.3044 21 1 -2.2474 -5.3639 2.3882 22 1 -1.9580 -7.7508 2.0744 23 1 -0.4888 -6.5381 3.5754 24 1 -0.3634 0.0044 1.0276 25 1 -0.3633 0.8876 -0.5178 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6956 2.1354 -0.0004 28 1 4.1719 -2.0766 -0.0024 29 1 0.6418 -2.4765 0.3484 30 1 3.5571 -2.4805 -1.7036 31 1 4.6668 -4.5023 -2.5471 32 1 3.9427 -6.7305 -1.7995 33 1 2.1065 -6.9691 -0.2110 34 1 -0.5265 -7.7971 -0.0915 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212817099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:52 Heat of formation + Delta-G solvation = 13.832714 kcal Electronic energy + Delta-G solvation = -19970.720479 eV Core-core repulsion = 16782.583283 eV Total energy + Delta-G solvation = -3188.137196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.54515 -40.23184 -38.01595 -35.17982 -33.88441 -33.33931 -30.26870 -29.22631 -28.10859 -27.42994 -25.36792 -23.03581 -22.19115 -20.83010 -20.34925 -17.72797 -17.36817 -17.03716 -16.57924 -15.92509 -15.63234 -15.07916 -14.53826 -14.11500 -13.87945 -13.43648 -13.33631 -12.99377 -12.79505 -12.74237 -12.43585 -12.19191 -11.98220 -11.77639 -11.47138 -11.30473 -11.12468 -10.67108 -10.39613 -9.82840 -9.74064 -9.39352 -9.35885 -9.27482 -8.14094 -7.58789 -6.94831 -6.49876 -4.48040 1.28593 1.41875 2.65415 2.87362 2.96739 2.98141 3.08615 3.79314 3.88691 3.95059 4.11376 4.49655 4.79395 4.89668 5.12905 5.45285 5.51239 5.56345 5.63350 5.83720 5.97129 6.07321 6.15785 6.25609 6.37556 6.42157 6.77313 6.88083 6.97317 7.03673 7.23061 7.48440 7.56187 7.92005 7.93509 8.04254 8.13099 8.33691 8.48391 8.68427 8.79063 10.04562 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.005610 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.642585 B = 4989.745368 C = 6017.347834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.103 4.103 3 C -0.150 4.150 4 C 0.226 3.774 5 F -0.128 7.128 6 N -0.481 5.481 7 C 0.073 3.927 8 C 0.157 3.843 9 N -0.637 5.637 10 C 0.037 3.963 11 C -0.137 4.137 12 C -0.206 4.206 13 C -0.123 4.123 14 C -0.136 4.136 15 C 0.092 3.908 16 C -0.464 4.464 17 H 0.075 0.925 18 C 0.076 3.924 19 N -0.795 5.795 20 Si 0.910 3.090 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.264 1.264 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.176 0.824 29 H 0.409 0.591 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 7.594 0.878 7.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.115 4.115 3 C -0.171 4.171 4 C 0.072 3.928 5 F -0.108 7.108 6 N -0.195 5.195 7 C -0.090 4.090 8 C 0.048 3.952 9 N -0.255 5.255 10 C -0.058 4.058 11 C -0.158 4.158 12 C -0.226 4.226 13 C -0.142 4.142 14 C -0.156 4.156 15 C 0.088 3.912 16 C -0.494 4.494 17 H 0.093 0.907 18 C -0.142 4.142 19 N -0.420 5.420 20 Si 0.735 3.265 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.188 1.188 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.157 0.843 28 H 0.193 0.807 29 H 0.247 0.753 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.143 0.857 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.464 7.319 0.740 7.371 hybrid contribution -1.619 -0.023 0.650 1.744 sum -2.083 7.295 1.389 7.713 Atomic orbital electron populations 1.20651 0.89879 1.03413 1.02617 1.19715 0.96730 0.90762 1.04271 1.21334 0.92427 0.99190 1.04183 1.17818 0.86688 0.81624 1.06709 1.91534 1.80205 1.44643 1.94372 1.66874 1.41779 0.97579 1.13286 1.22602 0.90425 0.94795 1.01212 1.18774 0.92890 0.86721 0.96770 1.41670 1.16477 1.03204 1.64198 1.17765 1.01081 0.85855 1.01146 1.20489 0.98895 0.97574 0.98854 1.20248 1.03808 0.92398 1.06136 1.20473 0.98410 0.95665 0.99678 1.21015 0.95563 0.99143 0.99869 1.17342 0.92746 0.88930 0.92172 1.19255 1.11941 1.02093 1.16111 0.90705 1.25852 0.97252 0.95163 0.95928 1.69794 1.34620 1.09577 1.28015 0.86327 0.80021 0.78487 0.81692 1.19056 1.20236 1.18841 0.90863 0.91050 0.90849 0.84327 0.80724 0.75294 0.88180 0.88930 0.89171 0.85705 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.53 36.01 0.34 -0.94 16 2 C -0.10 -1.52 5.93 -104.12 -0.62 -2.14 16 3 C -0.15 -2.13 9.78 -39.39 -0.39 -2.52 16 4 C 0.23 3.78 8.40 -17.35 -0.15 3.63 16 5 F -0.13 -2.08 17.29 2.25 0.04 -2.04 16 6 N -0.48 -8.86 10.37 -13.41 -0.14 -9.00 16 7 C 0.07 1.33 8.72 -17.30 -0.15 1.18 16 8 C 0.16 2.73 6.20 -83.60 -0.52 2.21 16 9 N -0.64 -12.01 4.91 -7.94 -0.04 -12.05 16 10 C 0.04 0.81 6.24 -83.29 -0.52 0.29 16 11 C -0.14 -2.88 7.54 -39.41 -0.30 -3.18 16 12 C -0.21 -4.31 10.03 -39.37 -0.40 -4.71 16 13 C -0.12 -2.69 9.96 -39.98 -0.40 -3.09 16 14 C -0.14 -3.26 8.61 -39.29 -0.34 -3.59 16 15 C 0.09 2.21 5.58 -106.63 -0.59 1.62 16 16 C -0.46 -10.97 8.36 -37.91 -0.32 -11.28 16 17 H 0.07 1.68 7.14 -52.49 -0.37 1.30 16 18 C 0.08 1.74 5.24 -17.32 -0.09 1.65 16 19 N -0.79 -18.98 10.80 55.55 0.60 -18.38 16 20 Si 0.91 17.30 29.58 -169.99 -5.03 12.28 16 21 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 22 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.70 8.10 -51.93 -0.42 0.27 16 26 H 0.07 0.92 7.08 -51.93 -0.37 0.55 16 27 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 28 H 0.18 3.29 5.74 -52.48 -0.30 2.99 16 29 H 0.41 7.35 6.28 -40.82 -0.26 7.09 16 30 H 0.10 1.98 5.73 -52.49 -0.30 1.68 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.13 3.10 6.13 -52.48 -0.32 2.78 16 34 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 LS Contribution 291.22 15.07 4.39 4.39 Total: -1.00 -25.28 291.22 -7.77 -33.06 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -3.17 Total: 12.63 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -4.43 Total: -20.88 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.42 Total: -39.43 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.28 -7.77 -33.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212817099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.888 kcal (2) G-P(sol) polarization free energy of solvation -25.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds