Wall clock time and date at job start Mon Mar 30 2020 01:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38443 * 120.80553 * 2 1 4 4 C 1.38547 * 119.21912 * 180.29075 * 3 2 1 5 5 F 1.35101 * 119.55638 * 179.74258 * 4 3 2 6 6 N 1.32043 * 120.88077 * 359.72259 * 4 3 2 7 7 C 1.31852 * 121.76710 * 0.02562 * 6 4 3 8 8 C 1.38885 * 120.68563 * 359.97438 * 7 6 4 9 9 N 1.39727 * 120.46842 * 180.02562 * 8 7 6 10 10 C 1.38657 * 120.00096 * 336.59203 * 9 8 7 11 11 C 1.38818 * 120.29584 * 336.37401 * 10 9 8 12 12 C 1.38115 * 120.02107 * 179.97438 * 11 10 9 13 13 C 1.38935 * 120.63054 * 0.03175 * 12 11 10 14 14 C 1.36419 * 120.61160 * 359.97438 * 13 12 11 15 15 C 1.40741 * 119.95468 * 359.97438 * 14 13 12 16 16 C 1.41010 * 120.31513 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99966 * 152.93986 * 16 15 14 18 18 C 1.39909 * 119.99956 * 332.94616 * 16 15 14 19 19 N 1.30897 * 119.99832 * 347.82577 * 18 16 15 20 20 Si 1.86789 * 120.00048 * 167.82588 * 18 16 15 21 21 H 1.48506 * 109.47292 * 59.99846 * 20 18 16 22 22 H 1.48505 * 109.47310 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47450 * 299.99945 * 20 18 16 24 24 H 1.08999 * 109.47271 * 270.24563 * 1 2 3 25 25 H 1.08990 * 109.47118 * 30.25615 * 1 2 3 26 26 H 1.09003 * 109.46839 * 150.25478 * 1 2 3 27 27 H 1.07992 * 120.38492 * 359.97438 * 3 2 1 28 28 H 1.08009 * 119.65633 * 179.97438 * 7 6 4 29 29 H 0.97002 * 119.99802 * 156.60206 * 9 8 7 30 30 H 1.07996 * 119.99235 * 0.25398 * 11 10 9 31 31 H 1.07995 * 119.68173 * 179.97438 * 12 11 10 32 32 H 1.07997 * 119.69497 * 179.97438 * 13 12 11 33 33 H 1.08007 * 120.02369 * 179.97438 * 14 13 12 34 34 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2161 1.1891 0.0000 4 6 3.6010 1.1508 -0.0061 5 9 4.2997 2.3071 -0.0115 6 7 4.2471 -0.0008 -0.0065 7 6 3.6091 -1.1547 -0.0015 8 6 2.2209 -1.1971 0.0048 9 7 1.5495 -2.4224 0.0106 10 6 2.1806 -3.5610 -0.4667 11 6 3.2279 -3.4540 -1.3716 12 6 3.8528 -4.5919 -1.8429 13 6 3.4436 -5.8508 -1.4208 14 6 2.4171 -5.9859 -0.5325 15 6 1.7632 -4.8431 -0.0351 16 6 0.7010 -4.9740 0.8830 17 1 0.4895 -4.1776 1.5812 18 6 -0.0789 -6.1355 0.8896 19 7 0.0145 -6.9921 -0.0959 20 14 -1.2533 -6.4640 2.3044 21 1 -2.2474 -5.3639 2.3882 22 1 -1.9580 -7.7508 2.0744 23 1 -0.4888 -6.5381 3.5754 24 1 -0.3634 0.0044 1.0276 25 1 -0.3633 0.8876 -0.5178 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6956 2.1354 -0.0004 28 1 4.1719 -2.0766 -0.0024 29 1 0.6418 -2.4765 0.3484 30 1 3.5571 -2.4805 -1.7036 31 1 4.6668 -4.5023 -2.5471 32 1 3.9427 -6.7305 -1.7995 33 1 2.1065 -6.9691 -0.2110 34 1 -0.5265 -7.7971 -0.0915 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212817099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:51 Heat of formation + Delta-G solvation = 1.695540 kcal Electronic energy + Delta-G solvation = -19971.246787 eV Core-core repulsion = 16782.583283 eV Total energy + Delta-G solvation = -3188.663503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.84056 -41.59936 -39.61652 -36.65926 -35.54738 -34.64224 -31.89511 -30.75892 -29.51191 -28.69889 -27.07971 -24.40325 -23.60973 -22.39138 -21.94266 -19.32264 -18.82230 -18.36438 -18.04928 -17.43142 -16.96320 -16.68043 -16.08099 -15.45877 -15.22999 -14.81200 -14.72119 -14.41857 -14.24133 -14.11321 -13.69221 -13.63693 -13.46323 -13.06458 -12.93887 -12.83524 -12.68915 -12.18105 -11.97501 -11.51879 -11.39843 -11.05883 -10.70845 -10.48056 -9.66234 -9.33419 -8.63031 -8.07419 -6.23872 -0.02000 0.12853 0.98953 1.18714 1.41658 1.50776 1.54469 2.21524 2.47027 2.61395 2.76141 2.83553 3.58359 3.68740 3.73591 3.91049 4.28858 4.39946 4.53496 4.57591 4.59254 4.77090 4.78065 4.79556 5.07820 5.16667 5.20506 5.24121 5.34440 5.48555 5.65744 5.80984 5.88920 6.19727 6.24239 6.43914 6.64601 6.75862 6.85459 6.99342 7.08153 8.37559 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.005610 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.642585 B = 4989.745368 C = 6017.347834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.087 4.087 3 C -0.135 4.135 4 C 0.221 3.779 5 F -0.126 7.126 6 N -0.507 5.507 7 C 0.060 3.940 8 C 0.141 3.859 9 N -0.640 5.640 10 C 0.046 3.954 11 C -0.144 4.144 12 C -0.205 4.205 13 C -0.132 4.132 14 C -0.160 4.160 15 C 0.060 3.940 16 C -0.487 4.487 17 H 0.079 0.921 18 C 0.037 3.963 19 N -0.829 5.829 20 Si 0.977 3.023 21 H -0.256 1.256 22 H -0.274 1.274 23 H -0.266 1.266 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.180 0.820 28 H 0.161 0.839 29 H 0.412 0.588 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 9.789 1.157 10.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.157 4.157 4 C 0.066 3.934 5 F -0.106 7.106 6 N -0.222 5.222 7 C -0.102 4.102 8 C 0.034 3.966 9 N -0.260 5.260 10 C -0.051 4.051 11 C -0.165 4.165 12 C -0.225 4.225 13 C -0.151 4.151 14 C -0.181 4.181 15 C 0.056 3.944 16 C -0.517 4.517 17 H 0.097 0.903 18 C -0.177 4.177 19 N -0.455 5.455 20 Si 0.799 3.201 21 H -0.180 1.180 22 H -0.199 1.199 23 H -0.191 1.191 24 H 0.109 0.891 25 H 0.119 0.881 26 H 0.082 0.918 27 H 0.198 0.802 28 H 0.178 0.822 29 H 0.251 0.749 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.581 9.545 1.015 9.728 hybrid contribution -1.160 -0.492 0.512 1.360 sum -2.741 9.053 1.528 9.582 Atomic orbital electron populations 1.20775 0.87308 1.04422 1.04051 1.20126 0.98473 0.89742 1.01519 1.21690 0.91285 1.00632 1.02056 1.18171 0.87800 0.81221 1.06224 1.91544 1.80394 1.44321 1.94307 1.66780 1.42745 0.98197 1.14446 1.22367 0.90864 0.94448 1.02502 1.18915 0.92766 0.87075 0.97808 1.41521 1.16571 1.02960 1.64953 1.17863 1.00630 0.86264 1.00353 1.20673 0.98877 0.98212 0.98775 1.20576 1.04010 0.91953 1.05920 1.20684 0.98100 0.96946 0.99405 1.20999 0.96953 0.98649 1.01463 1.17656 0.93668 0.89893 0.93220 1.19460 1.12531 1.03031 1.16694 0.90279 1.26616 0.98569 0.94654 0.97894 1.69871 1.35810 1.10163 1.29657 0.85309 0.77995 0.78544 0.78260 1.18032 1.19871 1.19083 0.89100 0.88097 0.91776 0.80225 0.82183 0.74932 0.87025 0.86449 0.87345 0.87471 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.53 71.24 0.68 -1.47 16 2 C -0.09 -2.31 5.93 -19.54 -0.12 -2.42 16 3 C -0.14 -3.34 9.78 22.39 0.22 -3.12 16 4 C 0.22 6.86 8.40 84.73 0.71 7.57 16 5 F -0.13 -3.80 17.29 44.97 0.78 -3.02 16 6 N -0.51 -18.20 10.37 -196.35 -2.04 -20.23 16 7 C 0.06 2.16 8.72 84.84 0.74 2.90 16 8 C 0.14 4.73 6.20 38.31 0.24 4.97 16 9 N -0.64 -23.93 4.91 -179.03 -0.88 -24.81 16 10 C 0.05 2.01 6.24 39.02 0.24 2.26 16 11 C -0.14 -6.06 7.54 22.38 0.17 -5.90 16 12 C -0.20 -8.53 10.03 22.41 0.22 -8.30 16 13 C -0.13 -5.87 9.96 22.01 0.22 -5.65 16 14 C -0.16 -7.97 8.61 22.46 0.19 -7.78 16 15 C 0.06 2.95 5.58 -21.17 -0.12 2.83 16 16 C -0.49 -23.54 8.36 23.35 0.20 -23.34 16 17 H 0.08 3.60 7.14 -2.91 -0.02 3.57 16 18 C 0.04 1.73 5.24 85.24 0.45 2.17 16 19 N -0.83 -40.76 10.80 21.82 0.24 -40.52 16 20 Si 0.98 35.61 29.58 68.60 2.03 37.64 16 21 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 22 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 23 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.10 1.44 8.10 -2.39 -0.02 1.42 16 26 H 0.06 1.44 7.08 -2.39 -0.02 1.42 16 27 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.16 6.15 5.74 -2.91 -0.02 6.13 16 29 H 0.41 14.63 6.28 -92.71 -0.58 14.05 16 30 H 0.11 4.38 5.73 -2.91 -0.02 4.36 16 31 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.11 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.11 5.61 6.13 -2.91 -0.02 5.60 16 34 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 Total: -1.00 -55.50 291.22 4.74 -50.76 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.57 Total: 35.48 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 4.04 Total: -35.29 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -2.68 Total: -85.57 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.78 Total: -3.02 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -55.50 4.74 -50.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212817099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.454 kcal (2) G-P(sol) polarization free energy of solvation -55.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds