Wall clock time and date at job start Mon Mar 30 2020 01:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38460 * 120.80668 * 2 1 4 4 C 1.38526 * 119.21622 * 180.29861 * 3 2 1 5 5 F 1.35101 * 119.56634 * 179.70190 * 4 3 2 6 6 N 1.32037 * 120.86940 * 359.72167 * 4 3 2 7 7 C 1.31875 * 121.76197 * 359.97438 * 6 4 3 8 8 C 1.38824 * 120.68860 * 0.02658 * 7 6 4 9 9 N 1.39885 * 120.46151 * 179.97438 * 8 7 6 10 10 C 1.39703 * 119.99969 * 255.66563 * 9 8 7 11 11 C 1.39356 * 119.95667 * 5.94569 * 10 9 8 12 12 C 1.38467 * 120.42557 * 179.97438 * 11 10 9 13 13 C 1.37696 * 120.32610 * 359.97438 * 12 11 10 14 14 C 1.40761 * 119.89807 * 359.97438 * 13 12 11 15 15 C 1.41402 * 120.20836 * 180.27506 * 14 13 12 16 16 H 1.08002 * 120.00346 * 151.94579 * 15 14 13 17 17 C 1.39925 * 119.99964 * 331.94428 * 15 14 13 18 18 N 1.30831 * 120.00156 * 348.26635 * 17 15 14 19 19 Si 1.86806 * 120.00193 * 168.26646 * 17 15 14 20 20 H 1.48503 * 109.46628 * 60.00044 * 19 17 15 21 21 H 1.48498 * 109.47114 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46909 * 300.00384 * 19 17 15 23 23 C 1.38301 * 119.94972 * 185.91950 * 10 9 8 24 24 H 1.09000 * 109.47067 * 270.22249 * 1 2 3 25 25 H 1.08999 * 109.47290 * 30.22807 * 1 2 3 26 26 H 1.09002 * 109.47231 * 150.22741 * 1 2 3 27 27 H 1.07997 * 120.39235 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.65189 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99735 * 75.67071 * 9 8 7 30 30 H 1.08004 * 119.78678 * 0.02562 * 11 10 9 31 31 H 1.07992 * 119.83741 * 180.02562 * 12 11 10 32 32 H 1.07993 * 120.05377 * 180.02562 * 13 12 11 33 33 H 0.97005 * 120.00376 * 179.97438 * 18 17 15 34 34 H 1.07994 * 120.16916 * 0.04491 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1892 0.0000 4 6 3.6008 1.1508 -0.0063 5 9 4.2998 2.3069 -0.0125 6 7 4.2466 -0.0009 -0.0068 7 6 3.6081 -1.1548 -0.0008 8 6 2.2205 -1.1967 0.0057 9 7 1.5481 -2.4233 0.0115 10 6 0.9443 -2.8944 -1.1569 11 6 1.1165 -2.2052 -2.3558 12 6 0.5229 -2.6637 -3.5198 13 6 -0.2443 -3.8070 -3.5052 14 6 -0.4265 -4.5145 -2.3020 15 6 -1.2082 -5.6926 -2.2807 16 1 -1.0061 -6.4617 -1.5500 17 6 -2.2438 -5.8618 -3.2064 18 7 -2.6409 -4.8510 -3.9359 19 14 -3.0594 -7.5312 -3.4006 20 1 -3.6638 -7.9402 -2.1073 21 1 -4.1186 -7.4469 -4.4380 22 1 -2.0436 -8.5336 -3.8113 23 6 0.1768 -4.0444 -1.1222 24 1 -0.3633 0.0040 1.0277 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3634 -0.8920 -0.5103 27 1 1.6958 2.1356 -0.0004 28 1 4.1706 -2.0767 -0.0018 29 1 1.5010 -2.9467 0.8268 30 1 1.7175 -1.3081 -2.3774 31 1 0.6630 -2.1224 -4.4437 32 1 -0.7049 -4.1609 -4.4156 33 1 -3.3585 -4.9684 -4.5779 34 1 0.0423 -4.5793 -0.1937 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212817850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:54 Heat of formation + Delta-G solvation = 13.112736 kcal Electronic energy + Delta-G solvation = -19661.687057 eV Core-core repulsion = 16473.518640 eV Total energy + Delta-G solvation = -3188.168417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.95830 -40.36528 -37.84574 -35.39932 -33.65175 -33.06427 -30.09404 -29.72050 -28.21700 -26.80207 -25.28268 -23.33874 -22.09029 -20.95743 -20.35934 -17.65587 -17.44420 -17.36405 -16.73249 -16.03819 -15.54741 -15.02723 -14.53718 -14.44304 -13.90605 -13.57420 -13.45568 -12.91961 -12.80537 -12.66566 -12.50913 -12.23225 -11.93040 -11.68030 -11.40196 -11.15619 -10.81305 -10.55981 -10.02203 -9.95904 -9.55987 -9.42038 -9.33313 -9.05115 -8.62054 -7.48534 -6.75972 -6.48026 -4.42246 0.91766 1.12217 2.78729 3.05202 3.07212 3.08436 3.22905 3.52171 3.62405 3.88144 3.94777 4.51686 4.64306 4.73728 4.97065 5.29680 5.51615 5.60155 5.68939 5.71253 5.84444 6.15002 6.23219 6.39264 6.40574 6.55078 6.90139 6.94680 7.03000 7.17201 7.24722 7.58624 7.69491 7.77738 8.02689 8.11960 8.33935 8.39697 8.65900 8.89330 8.97267 10.20524 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.043442 B = 0.003893 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.377493 B = 7189.955497 C = 7267.282707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.018 4.018 3 C -0.190 4.190 4 C 0.291 3.709 5 F -0.119 7.119 6 N -0.512 5.512 7 C 0.127 3.873 8 C 0.118 3.882 9 N -0.710 5.710 10 C 0.212 3.788 11 C -0.286 4.286 12 C -0.078 4.078 13 C -0.186 4.186 14 C 0.139 3.861 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.798 5.798 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.275 4.275 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.402 0.598 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.280 0.720 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 6.905 6.232 10.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.027 4.027 3 C -0.212 4.212 4 C 0.138 3.862 5 F -0.098 7.098 6 N -0.227 5.227 7 C -0.032 4.032 8 C 0.021 3.979 9 N -0.342 5.342 10 C 0.117 3.883 11 C -0.308 4.308 12 C -0.097 4.097 13 C -0.206 4.206 14 C 0.136 3.864 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.423 5.423 19 Si 0.734 3.266 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.298 4.298 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.163 0.837 28 H 0.184 0.816 29 H 0.239 0.761 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.103 7.144 5.954 10.608 hybrid contribution -1.121 -0.555 0.139 1.259 sum 3.982 6.589 6.093 9.818 Atomic orbital electron populations 1.20858 0.89041 1.04817 1.02805 1.20714 0.97848 0.91464 0.92701 1.21638 0.92385 1.00145 1.06983 1.18076 0.86762 0.81723 0.99654 1.91591 1.80137 1.44510 1.93542 1.66971 1.41893 0.97705 1.16091 1.22942 0.91469 0.94355 0.94425 1.18353 0.91214 0.87185 1.01115 1.41740 1.61533 1.19253 1.11679 1.17411 0.92958 0.93598 0.84332 1.19871 1.13838 1.04462 0.92665 1.20467 0.97138 0.96522 0.95559 1.21294 1.02868 0.97612 0.98840 1.17347 0.88012 0.91274 0.89744 1.19524 1.12886 1.02927 1.14042 0.90611 1.25877 0.96448 0.97874 0.93951 1.69806 1.23206 1.30857 1.18473 0.86352 0.79001 0.82391 0.78840 1.19085 1.20371 1.18893 1.20473 1.11243 1.00008 0.98095 0.90588 0.91172 0.88759 0.83742 0.81620 0.76121 0.89969 0.89471 0.86377 0.90932 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 9.83 36.01 0.35 -1.23 16 2 C -0.02 -0.25 5.47 -104.14 -0.57 -0.82 16 3 C -0.19 -2.45 9.78 -39.39 -0.39 -2.84 16 4 C 0.29 4.21 8.40 -17.36 -0.15 4.07 16 5 F -0.12 -1.67 17.29 2.25 0.04 -1.63 16 6 N -0.51 -7.90 10.37 -13.43 -0.14 -8.04 16 7 C 0.13 1.84 11.12 -17.32 -0.19 1.65 16 8 C 0.12 1.77 4.55 -83.56 -0.38 1.39 16 9 N -0.71 -11.41 4.92 -8.34 -0.04 -11.45 16 10 C 0.21 4.32 5.21 -83.83 -0.44 3.88 16 11 C -0.29 -6.12 8.78 -39.08 -0.34 -6.47 16 12 C -0.08 -1.78 10.01 -39.69 -0.40 -2.18 16 13 C -0.19 -4.69 8.67 -38.83 -0.34 -5.03 16 14 C 0.14 3.56 5.55 -106.85 -0.59 2.96 16 15 C -0.46 -11.90 9.06 -37.75 -0.34 -12.24 16 16 H 0.08 1.86 7.87 -52.49 -0.41 1.45 16 17 C 0.08 1.85 5.24 -17.35 -0.09 1.76 16 18 N -0.80 -20.15 10.84 55.55 0.60 -19.55 16 19 Si 0.91 18.25 29.58 -169.99 -5.03 13.23 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 23 C -0.27 -6.26 9.64 -38.67 -0.37 -6.63 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 26 H 0.09 1.57 5.90 -51.93 -0.31 1.26 16 27 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.40 5.64 8.84 -40.82 -0.36 5.28 16 30 H 0.08 1.69 6.75 -52.48 -0.35 1.34 16 31 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.12 3.11 6.18 -52.49 -0.32 2.79 16 33 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 34 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -26.91 297.94 -7.74 -34.65 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -3.43 Total: 10.02 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -4.23 Total: -21.72 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.42 Total: -39.03 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.91 -7.74 -34.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212817850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.760 kcal (2) G-P(sol) polarization free energy of solvation -26.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds