Wall clock time and date at job start Mon Mar 30 2020 01:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38460 * 120.80668 * 2 1 4 4 C 1.38526 * 119.21622 * 180.29861 * 3 2 1 5 5 F 1.35101 * 119.56634 * 179.70190 * 4 3 2 6 6 N 1.32037 * 120.86940 * 359.72167 * 4 3 2 7 7 C 1.31875 * 121.76197 * 359.97438 * 6 4 3 8 8 C 1.38824 * 120.68860 * 0.02658 * 7 6 4 9 9 N 1.39885 * 120.46151 * 179.97438 * 8 7 6 10 10 C 1.39703 * 119.99969 * 255.66563 * 9 8 7 11 11 C 1.39356 * 119.95667 * 5.94569 * 10 9 8 12 12 C 1.38467 * 120.42557 * 179.97438 * 11 10 9 13 13 C 1.37696 * 120.32610 * 359.97438 * 12 11 10 14 14 C 1.40761 * 119.89807 * 359.97438 * 13 12 11 15 15 C 1.41402 * 120.20836 * 180.27506 * 14 13 12 16 16 H 1.08002 * 120.00346 * 151.94579 * 15 14 13 17 17 C 1.39925 * 119.99964 * 331.94428 * 15 14 13 18 18 N 1.30831 * 120.00156 * 348.26635 * 17 15 14 19 19 Si 1.86806 * 120.00193 * 168.26646 * 17 15 14 20 20 H 1.48503 * 109.46628 * 60.00044 * 19 17 15 21 21 H 1.48498 * 109.47114 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46909 * 300.00384 * 19 17 15 23 23 C 1.38301 * 119.94972 * 185.91950 * 10 9 8 24 24 H 1.09000 * 109.47067 * 270.22249 * 1 2 3 25 25 H 1.08999 * 109.47290 * 30.22807 * 1 2 3 26 26 H 1.09002 * 109.47231 * 150.22741 * 1 2 3 27 27 H 1.07997 * 120.39235 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.65189 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99735 * 75.67071 * 9 8 7 30 30 H 1.08004 * 119.78678 * 0.02562 * 11 10 9 31 31 H 1.07992 * 119.83741 * 180.02562 * 12 11 10 32 32 H 1.07993 * 120.05377 * 180.02562 * 13 12 11 33 33 H 0.97005 * 120.00376 * 179.97438 * 18 17 15 34 34 H 1.07994 * 120.16916 * 0.04491 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1892 0.0000 4 6 3.6008 1.1508 -0.0063 5 9 4.2998 2.3069 -0.0125 6 7 4.2466 -0.0009 -0.0068 7 6 3.6081 -1.1548 -0.0008 8 6 2.2205 -1.1967 0.0057 9 7 1.5481 -2.4233 0.0115 10 6 0.9443 -2.8944 -1.1569 11 6 1.1165 -2.2052 -2.3558 12 6 0.5229 -2.6637 -3.5198 13 6 -0.2443 -3.8070 -3.5052 14 6 -0.4265 -4.5145 -2.3020 15 6 -1.2082 -5.6926 -2.2807 16 1 -1.0061 -6.4617 -1.5500 17 6 -2.2438 -5.8618 -3.2064 18 7 -2.6409 -4.8510 -3.9359 19 14 -3.0594 -7.5312 -3.4006 20 1 -3.6638 -7.9402 -2.1073 21 1 -4.1186 -7.4469 -4.4380 22 1 -2.0436 -8.5336 -3.8113 23 6 0.1768 -4.0444 -1.1222 24 1 -0.3633 0.0040 1.0277 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3634 -0.8920 -0.5103 27 1 1.6958 2.1356 -0.0004 28 1 4.1706 -2.0767 -0.0018 29 1 1.5010 -2.9467 0.8268 30 1 1.7175 -1.3081 -2.3774 31 1 0.6630 -2.1224 -4.4437 32 1 -0.7049 -4.1609 -4.4156 33 1 -3.3585 -4.9684 -4.5779 34 1 0.0423 -4.5793 -0.1937 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212817850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:53 Heat of formation + Delta-G solvation = -0.685801 kcal Electronic energy + Delta-G solvation = -19662.285406 eV Core-core repulsion = 16473.518640 eV Total energy + Delta-G solvation = -3188.766766 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.06301 -41.55246 -39.48655 -36.90643 -35.14519 -34.47085 -31.73282 -31.27646 -29.45076 -28.18787 -27.12387 -24.52917 -23.29100 -22.71287 -22.00519 -19.31776 -18.60342 -18.50937 -18.06127 -17.41938 -17.06525 -16.62740 -16.28877 -15.53998 -15.07346 -14.95246 -14.78773 -14.41875 -14.20813 -13.98422 -13.84644 -13.64737 -13.48888 -13.06222 -12.86329 -12.75489 -12.61817 -12.16907 -11.76118 -11.44870 -11.23701 -10.98154 -10.64117 -10.47962 -9.87036 -9.32409 -8.56197 -8.11100 -6.33509 -0.21516 0.01668 1.04091 1.29655 1.41913 1.52628 1.58824 2.24085 2.34386 2.50750 2.65563 2.83070 3.43487 3.63602 3.80228 3.96971 4.15588 4.44125 4.47256 4.59925 4.65009 4.70561 4.74010 5.09358 5.12631 5.16870 5.20529 5.28350 5.39914 5.43459 5.58389 5.91625 5.99376 6.18493 6.28781 6.50828 6.61416 6.85176 6.95798 7.02317 7.16599 8.41282 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.043442 B = 0.003893 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.377493 B = 7189.955497 C = 7267.282707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.019 4.019 3 C -0.176 4.176 4 C 0.285 3.715 5 F -0.118 7.118 6 N -0.531 5.531 7 C 0.129 3.871 8 C 0.100 3.900 9 N -0.695 5.695 10 C 0.234 3.766 11 C -0.283 4.283 12 C -0.079 4.079 13 C -0.217 4.217 14 C 0.112 3.888 15 C -0.500 4.500 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.829 5.829 19 Si 0.980 3.020 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.262 1.262 23 C -0.289 4.289 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.176 0.824 28 H 0.179 0.821 29 H 0.413 0.587 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.285 0.715 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 7.791 7.185 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.029 4.029 3 C -0.198 4.198 4 C 0.132 3.868 5 F -0.097 7.097 6 N -0.246 5.246 7 C -0.029 4.029 8 C 0.003 3.997 9 N -0.327 5.327 10 C 0.136 3.864 11 C -0.306 4.306 12 C -0.098 4.098 13 C -0.238 4.238 14 C 0.110 3.890 15 C -0.530 4.530 16 H 0.093 0.907 17 C -0.179 4.179 18 N -0.456 5.456 19 Si 0.802 3.198 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.186 1.186 23 C -0.313 4.313 24 H 0.113 0.887 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.193 0.807 28 H 0.196 0.804 29 H 0.252 0.748 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.351 8.060 6.944 11.908 hybrid contribution -1.065 -0.647 -0.075 1.248 sum 4.286 7.413 6.868 10.977 Atomic orbital electron populations 1.20835 0.88485 1.04001 1.03855 1.20832 0.98249 0.91485 0.92297 1.21836 0.91667 1.00992 1.05287 1.18304 0.87440 0.81553 0.99533 1.91597 1.80225 1.44359 1.93498 1.66976 1.42530 0.98232 1.16869 1.23066 0.91316 0.94690 0.93838 1.18457 0.91498 0.86858 1.02838 1.41551 1.60568 1.19839 1.10753 1.17305 0.91353 0.92224 0.85491 1.19994 1.13416 1.04716 0.92470 1.20681 0.96377 0.95811 0.96952 1.21185 1.04980 0.99323 0.98280 1.17678 0.88772 0.91841 0.90749 1.19802 1.14201 1.03592 1.15414 0.90651 1.26696 0.96612 1.01435 0.93154 1.69883 1.23840 1.32782 1.19073 0.85279 0.78002 0.77507 0.79055 1.18408 1.19467 1.18641 1.20579 1.11875 1.01095 0.97707 0.88668 0.89300 0.92132 0.80664 0.80373 0.74828 0.88670 0.87889 0.88441 0.90433 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.83 71.24 0.70 -2.08 16 2 C -0.02 -0.48 5.47 -19.55 -0.11 -0.59 16 3 C -0.18 -3.96 9.78 22.39 0.22 -3.74 16 4 C 0.28 7.49 8.40 84.73 0.71 8.20 16 5 F -0.12 -3.03 17.29 44.97 0.78 -2.25 16 6 N -0.53 -15.26 10.37 -196.41 -2.04 -17.30 16 7 C 0.13 3.48 11.12 84.83 0.94 4.42 16 8 C 0.10 2.77 4.55 38.26 0.17 2.94 16 9 N -0.70 -21.16 4.92 -180.31 -0.89 -22.05 16 10 C 0.23 9.33 5.21 38.17 0.20 9.52 16 11 C -0.28 -11.86 8.78 22.59 0.20 -11.66 16 12 C -0.08 -3.65 10.01 22.20 0.22 -3.43 16 13 C -0.22 -11.33 8.67 22.76 0.20 -11.13 16 14 C 0.11 5.91 5.55 -21.31 -0.12 5.79 16 15 C -0.50 -26.43 9.06 23.46 0.21 -26.22 16 16 H 0.08 3.82 7.87 -2.91 -0.02 3.79 16 17 C 0.04 1.75 5.24 85.25 0.45 2.20 16 18 N -0.83 -43.10 10.84 21.82 0.24 -42.87 16 19 Si 0.98 37.77 29.58 68.60 2.03 39.80 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 21 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 C -0.29 -13.26 9.64 22.86 0.22 -13.03 16 24 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.09 1.80 8.10 -2.39 -0.02 1.78 16 26 H 0.06 1.91 5.90 -2.39 -0.01 1.90 16 27 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 28 H 0.18 4.21 8.06 -2.91 -0.02 4.18 16 29 H 0.41 10.85 8.84 -92.70 -0.82 10.03 16 30 H 0.10 3.73 6.75 -2.91 -0.02 3.71 16 31 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 32 H 0.10 5.40 6.18 -2.91 -0.02 5.38 16 33 H 0.29 13.50 8.30 -92.70 -0.77 12.73 16 34 H 0.10 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -58.69 297.94 4.66 -54.02 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.33 Total: 29.43 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 4.22 Total: -38.80 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -2.69 Total: -82.21 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -58.69 4.66 -54.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212817850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.335 kcal (2) G-P(sol) polarization free energy of solvation -58.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds