Wall clock time and date at job start Mon Mar 30 2020 01:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38254 * 120.48226 * 2 1 4 4 F 1.35099 * 119.61124 * 0.02562 * 3 2 1 5 5 N 1.32152 * 120.78241 * 180.31328 * 3 2 1 6 6 C 1.32061 * 121.87936 * 359.70964 * 5 3 2 7 7 C 1.37810 * 120.87738 * 0.02562 * 6 5 3 8 8 C 1.39366 * 120.47678 * 179.74702 * 2 1 3 9 9 N 1.39187 * 120.85475 * 359.97438 * 8 2 1 10 10 C 1.38890 * 120.00205 * 79.00017 * 9 8 2 11 11 C 1.39582 * 119.84045 * 1.47589 * 10 9 8 12 12 C 1.36324 * 120.16119 * 179.71587 * 11 10 9 13 13 C 1.40897 * 119.83419 * 0.57135 * 12 11 10 14 14 C 1.41107 * 120.15619 * 179.67695 * 13 12 11 15 15 H 1.08005 * 120.00193 * 204.57998 * 14 13 12 16 16 C 1.39865 * 119.99894 * 24.58377 * 14 13 12 17 17 N 1.30892 * 120.00007 * 19.01118 * 16 14 13 18 18 Si 1.86807 * 119.99878 * 199.01463 * 16 14 13 19 19 H 1.48492 * 109.47118 * 59.99769 * 18 16 14 20 20 H 1.48505 * 109.46884 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47030 * 299.99760 * 18 16 14 22 22 C 1.40905 * 119.68817 * 359.70267 * 13 12 11 23 23 C 1.36314 * 119.83876 * 359.97438 * 22 13 12 24 24 H 1.09007 * 109.46890 * 270.25255 * 1 2 3 25 25 H 1.08999 * 109.46690 * 30.24672 * 1 2 3 26 26 H 1.08995 * 109.47280 * 150.24908 * 1 2 3 27 27 H 1.08001 * 119.56018 * 180.02562 * 6 5 3 28 28 H 1.08003 * 120.43248 * 180.02562 * 7 6 5 29 29 H 0.96996 * 119.99751 * 258.72960 * 9 8 2 30 30 H 1.07998 * 119.91922 * 359.97438 * 11 10 9 31 31 H 1.07998 * 120.08441 * 180.29486 * 12 11 10 32 32 H 0.97006 * 120.00166 * 179.97438 * 17 16 14 33 33 H 1.08004 * 120.07799 * 179.97438 * 22 13 12 34 34 H 1.08003 * 119.92274 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1915 0.0000 4 9 1.5348 2.3626 0.0005 5 7 3.5299 1.1984 -0.0062 6 6 4.2332 0.0807 -0.0069 7 6 3.6088 -1.1479 -0.0017 8 6 2.2139 -1.2011 0.0053 9 7 1.5462 -2.4223 0.0112 10 6 1.0112 -2.9270 -1.1669 11 6 1.1718 -2.2218 -2.3608 12 6 0.6544 -2.7141 -3.5220 13 6 -0.0543 -3.9318 -3.5129 14 6 -0.5986 -4.4441 -4.7097 15 1 -1.4420 -5.1179 -4.6745 16 6 -0.0459 -4.0795 -5.9417 17 7 1.1653 -3.5860 -5.9952 18 14 -1.0362 -4.2967 -7.5107 19 1 -2.2823 -3.4935 -7.4247 20 1 -0.2314 -3.8381 -8.6714 21 1 -1.3823 -5.7304 -7.6831 22 6 -0.2175 -4.6353 -2.3030 23 6 0.3110 -4.1345 -1.1506 24 1 -0.3633 0.0045 1.0277 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3633 -0.8922 -0.5099 27 1 5.3121 0.1300 -0.0117 28 1 4.1911 -2.0575 -0.0019 29 1 1.4579 -2.9227 0.8374 30 1 1.7109 -1.2860 -2.3653 31 1 0.7835 -2.1698 -4.4458 32 1 1.5488 -3.3334 -6.8497 33 1 -0.7599 -5.5691 -2.2887 34 1 0.1864 -4.6724 -0.2224 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212841612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:13 Heat of formation + Delta-G solvation = 17.446676 kcal Electronic energy + Delta-G solvation = -19873.197225 eV Core-core repulsion = 16685.216742 eV Total energy + Delta-G solvation = -3187.980483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.88825 -40.26011 -37.99812 -35.62584 -33.45552 -32.42475 -30.79552 -29.59971 -28.62202 -27.04438 -24.76511 -22.90487 -22.22633 -21.23324 -20.33075 -17.83254 -17.35378 -17.31468 -16.55236 -15.86906 -15.64047 -15.08769 -14.97358 -14.00884 -13.91190 -13.57102 -13.32629 -12.91501 -12.72167 -12.60883 -12.53185 -12.15699 -11.87590 -11.76163 -11.47533 -11.09812 -11.03106 -10.63072 -9.88153 -9.75474 -9.60086 -9.44572 -9.23842 -8.81620 -8.73864 -7.64636 -6.82838 -6.64024 -4.19497 1.01919 1.15174 2.79702 2.96975 3.08402 3.10623 3.22669 3.57990 3.66990 3.94147 3.96733 4.59807 4.74568 4.89810 4.94175 5.39368 5.52151 5.67373 5.74188 5.79235 5.92941 6.10687 6.15874 6.27701 6.38621 6.60599 6.78574 6.86303 7.04612 7.20538 7.39598 7.53071 7.66354 7.71129 8.01331 8.11959 8.31262 8.41447 8.62109 8.91574 8.98444 10.22791 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024219 B = 0.004696 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.837266 B = 5960.737065 C = 6285.077894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.164 4.164 3 C 0.304 3.696 4 F -0.115 7.115 5 N -0.522 5.522 6 C 0.130 3.870 7 C -0.190 4.190 8 C 0.250 3.750 9 N -0.712 5.712 10 C 0.067 3.933 11 C -0.144 4.144 12 C -0.130 4.130 13 C 0.086 3.914 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.076 3.924 17 N -0.799 5.799 18 Si 0.904 3.096 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.195 4.195 23 C -0.139 4.139 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.165 0.835 28 H 0.143 0.857 29 H 0.400 0.600 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.280 0.720 33 H 0.094 0.906 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 4.318 9.406 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.169 4.169 3 C 0.150 3.850 4 F -0.095 7.095 5 N -0.237 5.237 6 C -0.026 4.026 7 C -0.212 4.212 8 C 0.147 3.853 9 N -0.346 5.346 10 C -0.027 4.027 11 C -0.166 4.166 12 C -0.150 4.150 13 C 0.083 3.917 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.141 4.141 17 N -0.425 5.425 18 Si 0.729 3.271 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.215 4.215 23 C -0.160 4.160 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.182 0.818 28 H 0.161 0.839 29 H 0.237 0.763 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.082 5.328 9.112 10.996 hybrid contribution -0.760 -0.802 -0.528 1.225 sum 2.322 4.527 8.584 9.978 Atomic orbital electron populations 1.20648 0.89012 1.04445 1.02426 1.21218 0.98983 0.91936 1.04813 1.17847 0.87007 0.80729 0.99371 1.91579 1.78179 1.46296 1.93402 1.66990 1.06444 1.33709 1.16564 1.22275 0.99708 0.85931 0.94692 1.22689 0.95071 0.99970 1.03479 1.17335 0.89789 0.86166 0.91995 1.41095 1.64636 1.19363 1.09506 1.17167 1.04334 0.96517 0.84666 1.20063 1.04902 0.99293 0.92326 1.20897 1.01557 0.96345 0.96203 1.17539 0.91256 0.90685 0.92184 1.19394 1.14331 1.25636 0.90166 0.90659 1.25844 0.94150 0.93064 1.01004 1.69841 1.12476 1.32230 1.27970 0.86432 0.80692 0.79685 0.80278 1.18920 1.20453 1.19102 1.20528 1.07624 1.00220 0.93129 1.19782 1.03040 0.95719 0.97478 0.91197 0.91402 0.89179 0.81763 0.83914 0.76313 0.89789 0.86423 0.90964 0.88741 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.63 36.01 0.35 -1.23 16 2 C -0.16 -2.54 5.45 -104.19 -0.57 -3.11 16 3 C 0.30 4.84 8.36 -17.41 -0.15 4.69 16 4 F -0.12 -1.81 16.51 2.25 0.04 -1.78 16 5 N -0.52 -8.08 10.37 -13.69 -0.14 -8.22 16 6 C 0.13 1.68 11.17 -17.61 -0.20 1.48 16 7 C -0.19 -2.57 10.06 -39.23 -0.39 -2.96 16 8 C 0.25 3.85 4.51 -83.60 -0.38 3.47 16 9 N -0.71 -11.36 4.81 -8.15 -0.04 -11.40 16 10 C 0.07 1.34 5.47 -83.66 -0.46 0.88 16 11 C -0.14 -3.25 8.79 -39.77 -0.35 -3.60 16 12 C -0.13 -3.29 8.64 -39.27 -0.34 -3.63 16 13 C 0.09 2.23 5.57 -106.79 -0.59 1.63 16 14 C -0.47 -12.13 9.03 -37.89 -0.34 -12.48 16 15 H 0.08 1.89 7.91 -52.48 -0.42 1.47 16 16 C 0.08 1.90 5.11 -17.34 -0.09 1.81 16 17 N -0.80 -20.62 11.02 55.54 0.61 -20.00 16 18 Si 0.90 18.63 29.60 -169.99 -5.03 13.59 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 C -0.19 -4.53 9.74 -39.27 -0.38 -4.91 16 23 C -0.14 -2.85 9.82 -39.77 -0.39 -3.24 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 26 H 0.09 1.50 6.15 -51.93 -0.32 1.18 16 27 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.14 1.70 8.06 -52.48 -0.42 1.27 16 29 H 0.40 5.42 8.82 -40.82 -0.36 5.06 16 30 H 0.08 1.85 6.68 -52.49 -0.35 1.50 16 31 H 0.12 3.13 6.20 -52.49 -0.33 2.81 16 32 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 33 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 34 H 0.09 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 297.07 15.07 4.48 4.48 Total: -1.00 -27.50 297.07 -7.78 -35.28 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -3.42 Total: 9.24 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -4.28 Total: -21.19 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.43 Total: -39.62 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.50 -7.78 -35.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212841612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.726 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds