Wall clock time and date at job start Mon Mar 30 2020 01:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38254 * 120.48226 * 2 1 4 4 F 1.35099 * 119.61124 * 0.02562 * 3 2 1 5 5 N 1.32152 * 120.78241 * 180.31328 * 3 2 1 6 6 C 1.32061 * 121.87936 * 359.70964 * 5 3 2 7 7 C 1.37810 * 120.87738 * 0.02562 * 6 5 3 8 8 C 1.39366 * 120.47678 * 179.74702 * 2 1 3 9 9 N 1.39187 * 120.85475 * 359.97438 * 8 2 1 10 10 C 1.38890 * 120.00205 * 79.00017 * 9 8 2 11 11 C 1.39582 * 119.84045 * 1.47589 * 10 9 8 12 12 C 1.36324 * 120.16119 * 179.71587 * 11 10 9 13 13 C 1.40897 * 119.83419 * 0.57135 * 12 11 10 14 14 C 1.41107 * 120.15619 * 179.67695 * 13 12 11 15 15 H 1.08005 * 120.00193 * 204.57998 * 14 13 12 16 16 C 1.39865 * 119.99894 * 24.58377 * 14 13 12 17 17 N 1.30892 * 120.00007 * 19.01118 * 16 14 13 18 18 Si 1.86807 * 119.99878 * 199.01463 * 16 14 13 19 19 H 1.48492 * 109.47118 * 59.99769 * 18 16 14 20 20 H 1.48505 * 109.46884 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47030 * 299.99760 * 18 16 14 22 22 C 1.40905 * 119.68817 * 359.70267 * 13 12 11 23 23 C 1.36314 * 119.83876 * 359.97438 * 22 13 12 24 24 H 1.09007 * 109.46890 * 270.25255 * 1 2 3 25 25 H 1.08999 * 109.46690 * 30.24672 * 1 2 3 26 26 H 1.08995 * 109.47280 * 150.24908 * 1 2 3 27 27 H 1.08001 * 119.56018 * 180.02562 * 6 5 3 28 28 H 1.08003 * 120.43248 * 180.02562 * 7 6 5 29 29 H 0.96996 * 119.99751 * 258.72960 * 9 8 2 30 30 H 1.07998 * 119.91922 * 359.97438 * 11 10 9 31 31 H 1.07998 * 120.08441 * 180.29486 * 12 11 10 32 32 H 0.97006 * 120.00166 * 179.97438 * 17 16 14 33 33 H 1.08004 * 120.07799 * 179.97438 * 22 13 12 34 34 H 1.08003 * 119.92274 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1915 0.0000 4 9 1.5348 2.3626 0.0005 5 7 3.5299 1.1984 -0.0062 6 6 4.2332 0.0807 -0.0069 7 6 3.6088 -1.1479 -0.0017 8 6 2.2139 -1.2011 0.0053 9 7 1.5462 -2.4223 0.0112 10 6 1.0112 -2.9270 -1.1669 11 6 1.1718 -2.2218 -2.3608 12 6 0.6544 -2.7141 -3.5220 13 6 -0.0543 -3.9318 -3.5129 14 6 -0.5986 -4.4441 -4.7097 15 1 -1.4420 -5.1179 -4.6745 16 6 -0.0459 -4.0795 -5.9417 17 7 1.1653 -3.5860 -5.9952 18 14 -1.0362 -4.2967 -7.5107 19 1 -2.2823 -3.4935 -7.4247 20 1 -0.2314 -3.8381 -8.6714 21 1 -1.3823 -5.7304 -7.6831 22 6 -0.2175 -4.6353 -2.3030 23 6 0.3110 -4.1345 -1.1506 24 1 -0.3633 0.0045 1.0277 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3633 -0.8922 -0.5099 27 1 5.3121 0.1300 -0.0117 28 1 4.1911 -2.0575 -0.0019 29 1 1.4579 -2.9227 0.8374 30 1 1.7109 -1.2860 -2.3653 31 1 0.7835 -2.1698 -4.4458 32 1 1.5488 -3.3334 -6.8497 33 1 -0.7599 -5.5691 -2.2887 34 1 0.1864 -4.6724 -0.2224 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212841612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:12 Heat of formation + Delta-G solvation = 2.847448 kcal Electronic energy + Delta-G solvation = -19873.830295 eV Core-core repulsion = 16685.216742 eV Total energy + Delta-G solvation = -3188.613553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.09105 -41.47787 -39.62828 -37.12852 -35.14345 -33.70026 -32.14720 -31.39523 -30.23458 -28.26754 -26.47329 -24.25802 -23.40269 -22.98042 -21.95883 -19.24395 -19.02504 -18.55245 -18.08091 -17.13117 -16.89685 -16.81150 -16.20138 -15.69440 -15.05347 -14.86493 -14.70417 -14.52029 -14.30294 -13.95416 -13.86372 -13.68551 -13.55997 -13.17896 -12.89523 -12.76237 -12.71331 -12.32708 -11.64873 -11.34095 -11.21344 -10.81549 -10.68429 -10.41526 -9.87716 -9.44851 -8.62762 -8.35522 -6.07954 -0.11386 -0.02748 1.05635 1.15452 1.39908 1.50093 1.56930 2.24827 2.37390 2.54672 2.70010 2.80400 3.63171 3.74820 3.77478 3.84396 4.26668 4.37809 4.43340 4.49004 4.64021 4.69152 4.77179 5.01203 5.09890 5.12284 5.19330 5.22994 5.39109 5.49983 5.67815 5.75941 5.89455 6.14949 6.33307 6.59003 6.59751 6.79475 7.02084 7.04338 7.17146 8.42216 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024219 B = 0.004696 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.837266 B = 5960.737065 C = 6285.077894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.170 4.170 3 C 0.288 3.712 4 F -0.120 7.120 5 N -0.537 5.537 6 C 0.137 3.863 7 C -0.182 4.182 8 C 0.229 3.771 9 N -0.697 5.697 10 C 0.100 3.900 11 C -0.152 4.152 12 C -0.151 4.151 13 C 0.048 3.952 14 C -0.504 4.504 15 H 0.072 0.928 16 C 0.035 3.965 17 N -0.836 5.836 18 Si 0.974 3.026 19 H -0.264 1.264 20 H -0.272 1.272 21 H -0.259 1.259 22 C -0.199 4.199 23 C -0.140 4.140 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.205 0.795 28 H 0.165 0.835 29 H 0.416 0.584 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.283 0.717 33 H 0.102 0.898 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.234 4.081 10.911 12.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.176 4.176 3 C 0.135 3.865 4 F -0.099 7.099 5 N -0.252 5.252 6 C -0.019 4.019 7 C -0.203 4.203 8 C 0.126 3.874 9 N -0.332 5.332 10 C 0.004 3.996 11 C -0.174 4.174 12 C -0.171 4.171 13 C 0.046 3.954 14 C -0.534 4.534 15 H 0.091 0.909 16 C -0.178 4.178 17 N -0.463 5.463 18 Si 0.795 3.205 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.183 1.183 22 C -0.219 4.219 23 C -0.162 4.162 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.222 0.778 28 H 0.182 0.818 29 H 0.256 0.744 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.840 5.101 10.669 12.433 hybrid contribution -0.883 -0.658 -0.755 1.336 sum 2.956 4.442 9.913 11.258 Atomic orbital electron populations 1.20607 0.88733 1.03337 1.03451 1.21267 0.99318 0.92051 1.04939 1.17972 0.87413 0.80746 1.00359 1.91561 1.78346 1.46484 1.93528 1.67065 1.06313 1.35016 1.16828 1.22945 1.01351 0.84923 0.92726 1.22917 0.94246 1.01202 1.01974 1.17526 0.90687 0.85604 0.93549 1.40917 1.63866 1.19635 1.08759 1.17154 1.01788 0.95442 0.85222 1.20044 1.05146 0.99631 0.92556 1.20769 1.03239 0.96736 0.96363 1.17835 0.92743 0.91490 0.93363 1.19628 1.15176 1.27194 0.91432 0.90939 1.26617 0.94838 0.92531 1.03857 1.69909 1.13850 1.33719 1.28833 0.85381 0.78973 0.79801 0.76325 1.18811 1.19659 1.18342 1.20764 1.07471 1.00402 0.93284 1.20097 1.02051 0.95891 0.98153 0.89121 0.91355 0.91328 0.77833 0.81783 0.74441 0.89672 0.88889 0.90648 0.87956 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.92 9.63 71.24 0.69 -2.23 16 2 C -0.17 -5.02 5.45 -19.59 -0.11 -5.13 16 3 C 0.29 8.79 8.36 84.65 0.71 9.49 16 4 F -0.12 -3.69 16.51 44.97 0.74 -2.95 16 5 N -0.54 -15.49 10.37 -197.23 -2.05 -17.54 16 6 C 0.14 3.08 11.17 84.56 0.94 4.03 16 7 C -0.18 -4.31 10.06 22.50 0.23 -4.08 16 8 C 0.23 6.47 4.51 38.57 0.17 6.65 16 9 N -0.70 -20.23 4.81 -179.71 -0.87 -21.10 16 10 C 0.10 3.82 5.47 38.67 0.21 4.03 16 11 C -0.15 -6.84 8.79 22.15 0.19 -6.64 16 12 C -0.15 -7.89 8.64 22.47 0.19 -7.70 16 13 C 0.05 2.57 5.57 -21.27 -0.12 2.45 16 14 C -0.50 -27.24 9.03 23.37 0.21 -27.03 16 15 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 16 C 0.03 1.78 5.11 85.23 0.44 2.22 16 17 N -0.84 -44.74 11.02 21.81 0.24 -44.50 16 18 Si 0.97 39.09 29.60 68.60 2.03 41.12 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 C -0.20 -9.21 9.74 22.47 0.22 -8.99 16 23 C -0.14 -5.47 9.82 22.15 0.22 -5.26 16 24 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 25 H 0.07 1.88 7.66 -2.39 -0.02 1.86 16 26 H 0.07 2.22 6.15 -2.39 -0.01 2.20 16 27 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 28 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 29 H 0.42 9.67 8.82 -92.71 -0.82 8.85 16 30 H 0.09 3.75 6.68 -2.91 -0.02 3.73 16 31 H 0.09 5.24 6.20 -2.91 -0.02 5.22 16 32 H 0.28 13.90 8.30 -92.70 -0.77 13.13 16 33 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 34 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -61.24 297.07 4.63 -56.61 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.33 Total: 26.54 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 4.20 Total: -38.18 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.67 Total: -83.14 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.74 Total: -2.95 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -61.24 4.63 -56.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212841612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.460 kcal (2) G-P(sol) polarization free energy of solvation -61.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds