Wall clock time and date at job start Mon Mar 30 2020 01:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38245 * 120.48114 * 2 1 4 4 F 1.35102 * 119.61101 * 359.97438 * 3 2 1 5 5 N 1.32153 * 120.78443 * 179.97438 * 3 2 1 6 6 C 1.32058 * 121.87318 * 0.02562 * 5 3 2 7 7 C 1.37807 * 120.87743 * 359.74515 * 6 5 3 8 8 C 1.39345 * 120.47907 * 179.97438 * 2 1 3 9 9 N 1.39244 * 120.84926 * 359.97438 * 8 2 1 10 10 C 1.39754 * 120.00104 * 75.54543 * 9 8 2 11 11 C 1.39341 * 119.95433 * 5.92817 * 10 9 8 12 12 C 1.38468 * 120.42777 * 179.97438 * 11 10 9 13 13 C 1.37692 * 120.32431 * 0.04808 * 12 11 10 14 14 C 1.40749 * 119.89784 * 359.95039 * 13 12 11 15 15 C 1.41401 * 120.21089 * 180.29917 * 14 13 12 16 16 H 1.08002 * 120.00283 * 151.95084 * 15 14 13 17 17 C 1.39930 * 120.00128 * 331.94477 * 15 14 13 18 18 N 1.30831 * 119.99929 * 348.18786 * 17 15 14 19 19 Si 1.86797 * 120.00290 * 168.18216 * 17 15 14 20 20 H 1.48501 * 109.46842 * 60.00226 * 19 17 15 21 21 H 1.48498 * 109.47544 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47242 * 300.00697 * 19 17 15 23 23 C 1.38285 * 119.95332 * 185.91325 * 10 9 8 24 24 H 1.09004 * 109.47095 * 270.02255 * 1 2 3 25 25 H 1.09003 * 109.47244 * 30.01640 * 1 2 3 26 26 H 1.09003 * 109.47171 * 150.02110 * 1 2 3 27 27 H 1.08003 * 119.56240 * 179.97438 * 6 5 3 28 28 H 1.08003 * 120.43880 * 180.25865 * 7 6 5 29 29 H 0.97003 * 120.00300 * 255.54204 * 9 8 2 30 30 H 1.08008 * 119.78589 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.83700 * 180.02562 * 12 11 10 32 32 H 1.08007 * 120.05390 * 180.02562 * 13 12 11 33 33 H 0.97001 * 120.00095 * 179.97438 * 18 17 15 34 34 H 1.08000 * 120.16166 * 0.03429 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1914 0.0000 4 9 1.5346 2.3625 -0.0005 5 7 3.5297 1.1984 0.0005 6 6 4.2330 0.0806 0.0005 7 6 3.6085 -1.1478 0.0053 8 6 2.2137 -1.2009 0.0005 9 7 1.5457 -2.4226 0.0016 10 6 0.9449 -2.8916 -1.1698 11 6 1.1189 -2.1990 -2.3664 12 6 0.5286 -2.6552 -3.5329 13 6 -0.2384 -3.7986 -3.5228 14 6 -0.4232 -4.5089 -2.3218 15 6 -1.2043 -5.6875 -2.3052 16 1 -1.0037 -6.4581 -1.5756 17 6 -2.2375 -5.8553 -3.2339 18 7 -2.6343 -4.8426 -3.9611 19 14 -3.0500 -7.5251 -3.4357 20 1 -3.6569 -7.9394 -2.1452 21 1 -4.1069 -7.4391 -4.4753 22 1 -2.0317 -8.5247 -3.8472 23 6 0.1787 -4.0424 -1.1399 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 5.3119 0.1299 0.0005 28 1 4.1906 -2.0575 0.0095 29 1 1.4973 -2.9483 0.8154 30 1 1.7182 -1.3006 -2.3840 31 1 0.6702 -2.1111 -4.4551 32 1 -0.6965 -4.1507 -4.4354 33 1 -3.3502 -4.9591 -4.6052 34 1 0.0428 -4.5799 -0.2131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212843588.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:15 Heat of formation + Delta-G solvation = 14.107666 kcal Electronic energy + Delta-G solvation = -19807.121841 eV Core-core repulsion = 16618.996568 eV Total energy + Delta-G solvation = -3188.125273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.91243 -40.29965 -37.92778 -35.60861 -33.44997 -32.49461 -30.88104 -29.84253 -27.97486 -26.71780 -25.30455 -23.03837 -22.28393 -20.98738 -20.44638 -18.05543 -17.54235 -17.20521 -16.11465 -15.75990 -15.54071 -15.26939 -14.76916 -14.47300 -13.94443 -13.59245 -13.34162 -12.95460 -12.84476 -12.62953 -12.55391 -12.25019 -11.75360 -11.68550 -11.35210 -11.17119 -10.81235 -10.56631 -10.02289 -9.74840 -9.62537 -9.45555 -9.30830 -8.96519 -8.76423 -7.50527 -6.77615 -6.53941 -4.43564 0.98066 1.10795 2.77393 3.03691 3.05578 3.07568 3.21240 3.53488 3.62132 3.84349 3.92573 4.60771 4.70961 4.87278 4.89630 5.33576 5.48339 5.66355 5.73535 5.79952 5.91897 6.18066 6.26100 6.36750 6.39744 6.61134 6.87880 6.91844 7.01357 7.13697 7.22785 7.61158 7.67120 7.74077 8.00591 8.08787 8.29178 8.35176 8.63729 8.87591 8.94985 10.19398 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.036662 B = 0.004177 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.550075 B = 6702.268883 C = 6904.260152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.160 4.160 3 C 0.306 3.694 4 F -0.114 7.114 5 N -0.523 5.523 6 C 0.131 3.869 7 C -0.192 4.192 8 C 0.248 3.752 9 N -0.714 5.714 10 C 0.210 3.790 11 C -0.284 4.284 12 C -0.078 4.078 13 C -0.184 4.184 14 C 0.139 3.861 15 C -0.463 4.463 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.797 5.797 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.273 4.273 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.166 0.834 28 H 0.143 0.857 29 H 0.405 0.595 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.280 0.720 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.870 4.944 6.131 10.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.166 4.166 3 C 0.152 3.848 4 F -0.094 7.094 5 N -0.237 5.237 6 C -0.026 4.026 7 C -0.214 4.214 8 C 0.145 3.855 9 N -0.346 5.346 10 C 0.116 3.884 11 C -0.307 4.307 12 C -0.097 4.097 13 C -0.205 4.205 14 C 0.136 3.864 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.422 5.422 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.296 4.296 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.183 0.817 28 H 0.161 0.839 29 H 0.242 0.758 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.099 5.951 5.857 10.960 hybrid contribution -0.950 -1.343 0.152 1.652 sum 6.150 4.608 6.009 9.755 Atomic orbital electron populations 1.20684 0.88837 1.04669 1.02581 1.21151 0.99063 0.91825 1.04576 1.17823 0.86964 0.80735 0.99275 1.91584 1.78177 1.46227 1.93374 1.66994 1.06428 1.33677 1.16644 1.22260 0.99695 0.85884 0.94740 1.22600 0.94780 1.00039 1.03965 1.17375 0.89852 0.86094 0.92224 1.41737 1.61839 1.19081 1.11946 1.17378 0.93231 0.93770 0.84056 1.19881 1.13874 1.04264 0.92667 1.20470 0.97124 0.96515 0.95561 1.21302 1.02730 0.97570 0.98867 1.17347 0.88040 0.91330 0.89715 1.19520 1.13002 1.02804 1.13982 0.90589 1.25886 0.96423 0.97921 0.93965 1.69805 1.23205 1.30832 1.18400 0.86340 0.79003 0.82323 0.78859 1.19071 1.20345 1.18886 1.20470 1.11074 0.99936 0.98131 0.91085 0.91328 0.88984 0.81725 0.83885 0.75807 0.89912 0.89366 0.86317 0.90882 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.63 36.00 0.35 -1.35 16 2 C -0.16 -2.51 5.47 -104.21 -0.57 -3.08 16 3 C 0.31 4.80 8.36 -17.41 -0.15 4.65 16 4 F -0.11 -1.79 16.51 2.25 0.04 -1.75 16 5 N -0.52 -7.84 10.37 -13.69 -0.14 -7.98 16 6 C 0.13 1.60 11.17 -17.61 -0.20 1.41 16 7 C -0.19 -2.48 10.06 -39.24 -0.39 -2.87 16 8 C 0.25 3.79 4.56 -83.58 -0.38 3.41 16 9 N -0.71 -11.71 4.91 -8.31 -0.04 -11.76 16 10 C 0.21 4.34 5.22 -83.82 -0.44 3.90 16 11 C -0.28 -6.18 8.79 -39.09 -0.34 -6.52 16 12 C -0.08 -1.79 10.01 -39.70 -0.40 -2.19 16 13 C -0.18 -4.68 8.67 -38.83 -0.34 -5.01 16 14 C 0.14 3.56 5.55 -106.85 -0.59 2.97 16 15 C -0.46 -11.89 9.06 -37.75 -0.34 -12.23 16 16 H 0.08 1.87 7.87 -52.49 -0.41 1.45 16 17 C 0.08 1.85 5.24 -17.34 -0.09 1.76 16 18 N -0.80 -20.21 10.84 55.55 0.60 -19.60 16 19 Si 0.91 18.27 29.58 -169.99 -5.03 13.24 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 23 C -0.27 -6.26 9.64 -38.67 -0.37 -6.63 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.00 7.65 -51.93 -0.40 0.60 16 26 H 0.09 1.65 5.91 -51.93 -0.31 1.35 16 27 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 29 H 0.40 5.78 8.83 -40.82 -0.36 5.42 16 30 H 0.08 1.74 6.76 -52.48 -0.35 1.38 16 31 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.12 3.13 6.19 -52.48 -0.32 2.81 16 33 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 34 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -27.34 296.84 -7.76 -35.10 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.41 Total: 10.08 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -4.26 Total: -21.80 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.42 Total: -39.34 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.34 -7.76 -35.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212843588.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.209 kcal (2) G-P(sol) polarization free energy of solvation -27.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds