Wall clock time and date at job start Mon Mar 30 2020 01:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38245 * 120.48114 * 2 1 4 4 F 1.35102 * 119.61101 * 359.97438 * 3 2 1 5 5 N 1.32153 * 120.78443 * 179.97438 * 3 2 1 6 6 C 1.32058 * 121.87318 * 0.02562 * 5 3 2 7 7 C 1.37807 * 120.87743 * 359.74515 * 6 5 3 8 8 C 1.39345 * 120.47907 * 179.97438 * 2 1 3 9 9 N 1.39244 * 120.84926 * 359.97438 * 8 2 1 10 10 C 1.39754 * 120.00104 * 75.54543 * 9 8 2 11 11 C 1.39341 * 119.95433 * 5.92817 * 10 9 8 12 12 C 1.38468 * 120.42777 * 179.97438 * 11 10 9 13 13 C 1.37692 * 120.32431 * 0.04808 * 12 11 10 14 14 C 1.40749 * 119.89784 * 359.95039 * 13 12 11 15 15 C 1.41401 * 120.21089 * 180.29917 * 14 13 12 16 16 H 1.08002 * 120.00283 * 151.95084 * 15 14 13 17 17 C 1.39930 * 120.00128 * 331.94477 * 15 14 13 18 18 N 1.30831 * 119.99929 * 348.18786 * 17 15 14 19 19 Si 1.86797 * 120.00290 * 168.18216 * 17 15 14 20 20 H 1.48501 * 109.46842 * 60.00226 * 19 17 15 21 21 H 1.48498 * 109.47544 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47242 * 300.00697 * 19 17 15 23 23 C 1.38285 * 119.95332 * 185.91325 * 10 9 8 24 24 H 1.09004 * 109.47095 * 270.02255 * 1 2 3 25 25 H 1.09003 * 109.47244 * 30.01640 * 1 2 3 26 26 H 1.09003 * 109.47171 * 150.02110 * 1 2 3 27 27 H 1.08003 * 119.56240 * 179.97438 * 6 5 3 28 28 H 1.08003 * 120.43880 * 180.25865 * 7 6 5 29 29 H 0.97003 * 120.00300 * 255.54204 * 9 8 2 30 30 H 1.08008 * 119.78589 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.83700 * 180.02562 * 12 11 10 32 32 H 1.08007 * 120.05390 * 180.02562 * 13 12 11 33 33 H 0.97001 * 120.00095 * 179.97438 * 18 17 15 34 34 H 1.08000 * 120.16166 * 0.03429 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1914 0.0000 4 9 1.5346 2.3625 -0.0005 5 7 3.5297 1.1984 0.0005 6 6 4.2330 0.0806 0.0005 7 6 3.6085 -1.1478 0.0053 8 6 2.2137 -1.2009 0.0005 9 7 1.5457 -2.4226 0.0016 10 6 0.9449 -2.8916 -1.1698 11 6 1.1189 -2.1990 -2.3664 12 6 0.5286 -2.6552 -3.5329 13 6 -0.2384 -3.7986 -3.5228 14 6 -0.4232 -4.5089 -2.3218 15 6 -1.2043 -5.6875 -2.3052 16 1 -1.0037 -6.4581 -1.5756 17 6 -2.2375 -5.8553 -3.2339 18 7 -2.6343 -4.8426 -3.9611 19 14 -3.0500 -7.5251 -3.4357 20 1 -3.6569 -7.9394 -2.1452 21 1 -4.1069 -7.4391 -4.4753 22 1 -2.0317 -8.5247 -3.8472 23 6 0.1787 -4.0424 -1.1399 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 5.3119 0.1299 0.0005 28 1 4.1906 -2.0575 0.0095 29 1 1.4973 -2.9483 0.8154 30 1 1.7182 -1.3006 -2.3840 31 1 0.6702 -2.1111 -4.4551 32 1 -0.6965 -4.1507 -4.4354 33 1 -3.3502 -4.9591 -4.6052 34 1 0.0428 -4.5799 -0.2131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212843588.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:14 Heat of formation + Delta-G solvation = -0.264420 kcal Electronic energy + Delta-G solvation = -19807.745062 eV Core-core repulsion = 16618.996568 eV Total energy + Delta-G solvation = -3188.748494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.09329 -41.49365 -39.55084 -37.11310 -35.17052 -33.75995 -32.17662 -31.66855 -29.45760 -28.00834 -27.15669 -24.32213 -23.43790 -22.75374 -22.09361 -19.53379 -18.94288 -18.47650 -17.50741 -17.20950 -17.01751 -16.57423 -16.35017 -16.04047 -15.04921 -14.90323 -14.76399 -14.52354 -14.35885 -14.01884 -13.94310 -13.69332 -13.37113 -13.04072 -12.88852 -12.79737 -12.59615 -12.18259 -11.81245 -11.30218 -11.21720 -10.90570 -10.82171 -10.42648 -9.88656 -9.35765 -8.58402 -8.19936 -6.35684 -0.12356 -0.04993 1.01295 1.25693 1.41170 1.52199 1.57403 2.22602 2.32165 2.52439 2.64301 2.81006 3.61575 3.72495 3.75789 3.81579 4.21865 4.42471 4.47664 4.60474 4.60770 4.68395 4.74457 5.08495 5.10636 5.14377 5.17293 5.17574 5.36863 5.42988 5.57093 5.87525 5.96161 6.15517 6.25507 6.55208 6.59427 6.80845 6.88000 6.99461 7.12283 8.39479 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.036662 B = 0.004177 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.550075 B = 6702.268883 C = 6904.260152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.170 4.170 3 C 0.292 3.708 4 F -0.120 7.120 5 N -0.535 5.535 6 C 0.141 3.859 7 C -0.179 4.179 8 C 0.226 3.774 9 N -0.701 5.701 10 C 0.231 3.769 11 C -0.283 4.283 12 C -0.080 4.080 13 C -0.215 4.215 14 C 0.112 3.888 15 C -0.498 4.498 16 H 0.077 0.923 17 C 0.034 3.966 18 N -0.830 5.830 19 Si 0.982 3.018 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.260 1.260 23 C -0.287 4.287 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.209 0.791 28 H 0.168 0.832 29 H 0.416 0.584 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.286 0.714 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.427 4.961 7.105 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.175 4.175 3 C 0.139 3.861 4 F -0.099 7.099 5 N -0.250 5.250 6 C -0.015 4.015 7 C -0.201 4.201 8 C 0.123 3.877 9 N -0.333 5.333 10 C 0.134 3.866 11 C -0.306 4.306 12 C -0.099 4.099 13 C -0.236 4.236 14 C 0.109 3.891 15 C -0.528 4.528 16 H 0.095 0.905 17 C -0.180 4.180 18 N -0.456 5.456 19 Si 0.803 3.197 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.185 1.185 23 C -0.310 4.310 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.226 0.774 28 H 0.186 0.814 29 H 0.255 0.745 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.679 5.998 6.868 12.588 hybrid contribution -1.281 -1.198 -0.069 1.755 sum 7.398 4.799 6.799 11.135 Atomic orbital electron populations 1.20605 0.89190 1.03316 1.03219 1.21142 0.98963 0.92183 1.05241 1.17900 0.87409 0.80574 1.00179 1.91566 1.78395 1.46414 1.93496 1.67093 1.06068 1.35024 1.16819 1.22988 1.01426 0.84719 0.92384 1.22846 0.93610 1.01467 1.02130 1.17579 0.90929 0.85162 0.93987 1.41556 1.61082 1.19590 1.11035 1.17272 0.91645 0.92433 0.85239 1.20001 1.13567 1.04479 0.92542 1.20686 0.96404 0.95838 0.96937 1.21199 1.04781 0.99239 0.98349 1.17688 0.88804 0.91921 0.90706 1.19803 1.14240 1.03430 1.15328 0.90510 1.26728 0.96585 1.01533 0.93146 1.69885 1.23867 1.32824 1.19033 0.85255 0.78019 0.77388 0.79047 1.18411 1.19507 1.18474 1.20581 1.11645 1.01015 0.97772 0.89577 0.91045 0.91799 0.77441 0.81434 0.74488 0.88737 0.87806 0.88316 0.90390 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.18 9.63 71.23 0.69 -2.50 16 2 C -0.17 -5.03 5.47 -19.60 -0.11 -5.14 16 3 C 0.29 8.66 8.36 84.65 0.71 9.37 16 4 F -0.12 -3.61 16.51 44.97 0.74 -2.86 16 5 N -0.53 -14.54 10.37 -197.23 -2.05 -16.58 16 6 C 0.14 2.88 11.17 84.56 0.94 3.83 16 7 C -0.18 -3.94 10.06 22.49 0.23 -3.71 16 8 C 0.23 6.36 4.56 38.55 0.18 6.53 16 9 N -0.70 -21.69 4.91 -180.20 -0.89 -22.57 16 10 C 0.23 9.36 5.22 38.15 0.20 9.56 16 11 C -0.28 -12.08 8.79 22.59 0.20 -11.88 16 12 C -0.08 -3.71 10.01 22.20 0.22 -3.49 16 13 C -0.22 -11.29 8.67 22.75 0.20 -11.09 16 14 C 0.11 5.90 5.55 -21.31 -0.12 5.78 16 15 C -0.50 -26.32 9.06 23.46 0.21 -26.10 16 16 H 0.08 3.87 7.87 -2.91 -0.02 3.85 16 17 C 0.03 1.71 5.24 85.25 0.45 2.16 16 18 N -0.83 -43.40 10.84 21.82 0.24 -43.16 16 19 Si 0.98 37.78 29.58 68.60 2.03 39.81 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 23 C -0.29 -13.24 9.64 22.86 0.22 -13.02 16 24 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.07 2.05 7.65 -2.39 -0.02 2.03 16 26 H 0.06 2.28 5.91 -2.39 -0.01 2.27 16 27 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 28 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 29 H 0.42 11.03 8.83 -92.71 -0.82 10.21 16 30 H 0.09 3.80 6.76 -2.91 -0.02 3.78 16 31 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.10 5.48 6.19 -2.91 -0.02 5.46 16 33 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 34 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -60.28 296.84 4.61 -55.67 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.33 Total: 29.42 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 4.21 Total: -39.72 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -2.69 Total: -82.32 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.74 Total: -2.86 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -60.28 4.61 -55.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212843588.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.403 kcal (2) G-P(sol) polarization free energy of solvation -60.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds