Wall clock time and date at job start Mon Mar 30 2020 01:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38262 * 120.47977 * 2 1 4 4 F 1.35100 * 119.60850 * 0.02562 * 3 2 1 5 5 N 1.32153 * 120.78481 * 180.02562 * 3 2 1 6 6 C 1.32054 * 121.87665 * 0.02562 * 5 3 2 7 7 C 1.37808 * 120.88586 * 359.71506 * 6 5 3 8 8 C 1.39360 * 120.48186 * 180.02562 * 2 1 3 9 9 N 1.39189 * 120.85408 * 359.97438 * 8 2 1 10 10 C 1.38757 * 119.99888 * 174.67479 * 9 8 2 11 11 C 1.38781 * 120.29868 * 317.75324 * 10 9 8 12 12 C 1.38134 * 120.02314 * 180.02562 * 11 10 9 13 13 C 1.38920 * 120.63571 * 359.97438 * 12 11 10 14 14 C 1.36438 * 120.59890 * 0.02562 * 13 12 11 15 15 C 1.40744 * 119.94769 * 0.27676 * 14 13 12 16 16 C 1.41023 * 120.30313 * 179.69656 * 15 14 13 17 17 H 1.08006 * 119.99995 * 207.07290 * 16 15 14 18 18 C 1.39918 * 120.00201 * 27.07280 * 16 15 14 19 19 N 1.30874 * 120.00228 * 11.83539 * 18 16 15 20 20 Si 1.86808 * 120.00083 * 191.83179 * 18 16 15 21 21 H 1.48498 * 109.46713 * 60.00147 * 20 18 16 22 22 H 1.48495 * 109.46973 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46919 * 300.00488 * 20 18 16 24 24 H 1.09004 * 109.46773 * 269.97659 * 1 2 3 25 25 H 1.08995 * 109.47317 * 29.97848 * 1 2 3 26 26 H 1.09003 * 109.47283 * 149.97975 * 1 2 3 27 27 H 1.07998 * 119.55646 * 180.02562 * 6 5 3 28 28 H 1.08001 * 120.44107 * 180.31096 * 7 6 5 29 29 H 0.96991 * 120.00097 * 354.67775 * 9 8 2 30 30 H 1.07996 * 119.98901 * 0.04282 * 11 10 9 31 31 H 1.08006 * 119.68460 * 180.02562 * 12 11 10 32 32 H 1.07992 * 119.70360 * 180.02562 * 13 12 11 33 33 H 1.07992 * 120.02686 * 179.97438 * 14 13 12 34 34 H 0.96995 * 120.00597 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1916 0.0000 4 9 1.5346 2.3626 0.0005 5 7 3.5298 1.1986 -0.0005 6 6 4.2332 0.0809 -0.0015 7 6 3.6090 -1.1477 0.0038 8 6 2.2139 -1.2010 -0.0005 9 7 1.5463 -2.4223 -0.0005 10 6 2.2633 -3.6049 -0.1126 11 6 3.3152 -3.7034 -1.0126 12 6 4.0248 -4.8837 -1.1199 13 6 3.6974 -5.9806 -0.3328 14 6 2.6682 -5.9121 0.5603 15 6 1.9245 -4.7238 0.6855 16 6 0.8551 -4.6469 1.6017 17 1 0.0369 -3.9655 1.4206 18 6 0.8542 -5.4531 2.7452 19 7 1.9370 -6.1030 3.0886 20 14 -0.6928 -5.6019 3.7818 21 1 -1.7932 -6.1548 2.9521 22 1 -0.4346 -6.5090 4.9288 23 1 -1.0802 -4.2608 4.2881 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 5.3120 0.1304 -0.0015 28 1 4.1913 -2.0572 0.0079 29 1 0.5798 -2.4467 0.0777 30 1 3.5791 -2.8569 -1.6291 31 1 4.8426 -4.9541 -1.8218 32 1 4.2625 -6.8958 -0.4287 33 1 2.4214 -6.7706 1.1672 34 1 1.9365 -6.6617 3.8815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212843925.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:16 Heat of formation + Delta-G solvation = 11.619797 kcal Electronic energy + Delta-G solvation = -20115.257255 eV Core-core repulsion = 16927.024100 eV Total energy + Delta-G solvation = -3188.233155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.66586 -40.03252 -38.06610 -35.39743 -33.88110 -32.57209 -30.63728 -29.50442 -28.29498 -26.87853 -25.41457 -22.74065 -22.21103 -20.97046 -20.37126 -17.87828 -17.66942 -17.18918 -15.86121 -15.77286 -15.41212 -15.08299 -14.88189 -14.17043 -13.85581 -13.43618 -13.22713 -13.17396 -12.84953 -12.61955 -12.37176 -12.29989 -11.91690 -11.56874 -11.41211 -11.24440 -11.04901 -10.80443 -10.54763 -9.91771 -9.81968 -9.41232 -9.24489 -8.48509 -8.25408 -7.61733 -6.95971 -6.80407 -4.54701 1.37465 1.72360 2.60062 2.79262 2.94911 2.96401 3.05721 3.76732 3.79772 4.08570 4.15726 4.45688 4.95069 5.12580 5.21041 5.39409 5.60666 5.77220 5.85158 5.98212 6.02084 6.16361 6.20144 6.27337 6.37871 6.47125 6.78394 6.88156 7.00501 7.04833 7.19986 7.46005 7.53091 7.86876 7.87793 8.08112 8.16843 8.23898 8.42378 8.62859 8.73668 9.99765 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017289 B = 0.006386 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.096487 B = 4383.325138 C = 5539.474949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.252 4.252 3 C 0.335 3.665 4 F -0.121 7.121 5 N -0.567 5.567 6 C 0.156 3.844 7 C -0.251 4.251 8 C 0.281 3.719 9 N -0.627 5.627 10 C 0.011 3.989 11 C -0.109 4.109 12 C -0.221 4.221 13 C -0.111 4.111 14 C -0.144 4.144 15 C 0.105 3.895 16 C -0.457 4.457 17 H 0.074 0.926 18 C 0.076 3.924 19 N -0.792 5.792 20 Si 0.911 3.089 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.265 1.265 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.405 0.595 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 4.494 -3.172 5.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.262 4.262 3 C 0.181 3.819 4 F -0.101 7.101 5 N -0.286 5.286 6 C 0.002 3.998 7 C -0.277 4.277 8 C 0.164 3.836 9 N -0.243 5.243 10 C -0.084 4.084 11 C -0.130 4.130 12 C -0.241 4.241 13 C -0.130 4.130 14 C -0.164 4.164 15 C 0.101 3.899 16 C -0.486 4.486 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.417 5.417 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.189 1.189 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.176 0.824 28 H 0.170 0.830 29 H 0.242 0.758 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.144 0.856 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.466 4.992 -2.982 5.833 hybrid contribution -1.454 -0.692 0.682 1.749 sum -1.920 4.300 -2.300 5.241 Atomic orbital electron populations 1.20418 0.90051 1.02606 1.02334 1.19807 0.97445 0.91099 1.17879 1.17535 0.87112 0.79992 0.97235 1.91534 1.78451 1.46661 1.93420 1.66983 1.05977 1.33347 1.22288 1.22056 0.99230 0.85825 0.92684 1.22088 0.93414 1.00659 1.11502 1.17727 0.91550 0.85417 0.88867 1.41597 1.08593 1.01257 1.72833 1.17594 1.00189 0.85915 1.04653 1.20539 0.97662 0.97283 0.97481 1.20255 1.04008 0.94519 1.05330 1.20513 0.98173 0.97030 0.97302 1.21061 0.97760 0.98105 0.99473 1.17501 0.92951 0.89875 0.89535 1.19268 1.05388 1.19717 1.04257 0.90813 1.25861 0.97106 0.93456 0.97809 1.69775 1.27045 1.22045 1.22841 0.86309 0.81726 0.79329 0.79135 1.18737 1.20117 1.18947 0.91352 0.91344 0.91748 0.82386 0.83016 0.75787 0.88310 0.88903 0.89106 0.85642 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.41 36.01 0.34 -1.00 16 2 C -0.25 -4.26 5.92 -104.19 -0.62 -4.88 16 3 C 0.33 5.86 8.36 -17.40 -0.15 5.71 16 4 F -0.12 -2.02 16.51 2.25 0.04 -1.99 16 5 N -0.57 -10.07 10.37 -13.69 -0.14 -10.21 16 6 C 0.16 2.50 11.17 -17.61 -0.20 2.30 16 7 C -0.25 -4.42 8.12 -39.23 -0.32 -4.74 16 8 C 0.28 5.13 6.46 -83.59 -0.54 4.59 16 9 N -0.63 -12.03 4.93 -7.89 -0.04 -12.07 16 10 C 0.01 0.23 5.95 -83.26 -0.50 -0.26 16 11 C -0.11 -2.22 7.37 -39.42 -0.29 -2.51 16 12 C -0.22 -4.46 10.03 -39.37 -0.40 -4.86 16 13 C -0.11 -2.37 9.97 -39.98 -0.40 -2.77 16 14 C -0.14 -3.41 8.62 -39.28 -0.34 -3.74 16 15 C 0.11 2.52 5.58 -106.63 -0.60 1.93 16 16 C -0.46 -10.90 8.65 -37.90 -0.33 -11.22 16 17 H 0.07 1.66 6.95 -52.48 -0.36 1.29 16 18 C 0.08 1.76 5.24 -17.33 -0.09 1.67 16 19 N -0.79 -19.06 10.78 55.55 0.60 -18.46 16 20 Si 0.91 17.51 29.58 -169.99 -5.03 12.48 16 21 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 22 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 0.86 7.65 -51.93 -0.40 0.46 16 26 H 0.06 0.84 6.74 -51.93 -0.35 0.49 16 27 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 28 H 0.15 2.76 5.37 -52.49 -0.28 2.48 16 29 H 0.40 7.25 6.03 -40.82 -0.25 7.00 16 30 H 0.10 1.84 6.60 -52.49 -0.35 1.50 16 31 H 0.09 1.65 8.06 -52.48 -0.42 1.22 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.13 3.08 6.12 -52.49 -0.32 2.76 16 34 H 0.28 6.26 8.30 -40.82 -0.34 5.93 16 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -25.54 290.41 -7.74 -33.28 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -3.13 Total: 12.38 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -4.41 Total: -19.79 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.42 Total: -40.74 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -25.54 -7.74 -33.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212843925.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.904 kcal (2) G-P(sol) polarization free energy of solvation -25.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds