Wall clock time and date at job start Mon Mar 30 2020 01:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38262 * 120.47977 * 2 1 4 4 F 1.35100 * 119.60850 * 0.02562 * 3 2 1 5 5 N 1.32153 * 120.78481 * 180.02562 * 3 2 1 6 6 C 1.32054 * 121.87665 * 0.02562 * 5 3 2 7 7 C 1.37808 * 120.88586 * 359.71506 * 6 5 3 8 8 C 1.39360 * 120.48186 * 180.02562 * 2 1 3 9 9 N 1.39189 * 120.85408 * 359.97438 * 8 2 1 10 10 C 1.38757 * 119.99888 * 174.67479 * 9 8 2 11 11 C 1.38781 * 120.29868 * 317.75324 * 10 9 8 12 12 C 1.38134 * 120.02314 * 180.02562 * 11 10 9 13 13 C 1.38920 * 120.63571 * 359.97438 * 12 11 10 14 14 C 1.36438 * 120.59890 * 0.02562 * 13 12 11 15 15 C 1.40744 * 119.94769 * 0.27676 * 14 13 12 16 16 C 1.41023 * 120.30313 * 179.69656 * 15 14 13 17 17 H 1.08006 * 119.99995 * 207.07290 * 16 15 14 18 18 C 1.39918 * 120.00201 * 27.07280 * 16 15 14 19 19 N 1.30874 * 120.00228 * 11.83539 * 18 16 15 20 20 Si 1.86808 * 120.00083 * 191.83179 * 18 16 15 21 21 H 1.48498 * 109.46713 * 60.00147 * 20 18 16 22 22 H 1.48495 * 109.46973 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46919 * 300.00488 * 20 18 16 24 24 H 1.09004 * 109.46773 * 269.97659 * 1 2 3 25 25 H 1.08995 * 109.47317 * 29.97848 * 1 2 3 26 26 H 1.09003 * 109.47283 * 149.97975 * 1 2 3 27 27 H 1.07998 * 119.55646 * 180.02562 * 6 5 3 28 28 H 1.08001 * 120.44107 * 180.31096 * 7 6 5 29 29 H 0.96991 * 120.00097 * 354.67775 * 9 8 2 30 30 H 1.07996 * 119.98901 * 0.04282 * 11 10 9 31 31 H 1.08006 * 119.68460 * 180.02562 * 12 11 10 32 32 H 1.07992 * 119.70360 * 180.02562 * 13 12 11 33 33 H 1.07992 * 120.02686 * 179.97438 * 14 13 12 34 34 H 0.96995 * 120.00597 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1916 0.0000 4 9 1.5346 2.3626 0.0005 5 7 3.5298 1.1986 -0.0005 6 6 4.2332 0.0809 -0.0015 7 6 3.6090 -1.1477 0.0038 8 6 2.2139 -1.2010 -0.0005 9 7 1.5463 -2.4223 -0.0005 10 6 2.2633 -3.6049 -0.1126 11 6 3.3152 -3.7034 -1.0126 12 6 4.0248 -4.8837 -1.1199 13 6 3.6974 -5.9806 -0.3328 14 6 2.6682 -5.9121 0.5603 15 6 1.9245 -4.7238 0.6855 16 6 0.8551 -4.6469 1.6017 17 1 0.0369 -3.9655 1.4206 18 6 0.8542 -5.4531 2.7452 19 7 1.9370 -6.1030 3.0886 20 14 -0.6928 -5.6019 3.7818 21 1 -1.7932 -6.1548 2.9521 22 1 -0.4346 -6.5090 4.9288 23 1 -1.0802 -4.2608 4.2881 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 5.3120 0.1304 -0.0015 28 1 4.1913 -2.0572 0.0079 29 1 0.5798 -2.4467 0.0777 30 1 3.5791 -2.8569 -1.6291 31 1 4.8426 -4.9541 -1.8218 32 1 4.2625 -6.8958 -0.4287 33 1 2.4214 -6.7706 1.1672 34 1 1.9365 -6.6617 3.8815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212843925.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:16 Heat of formation + Delta-G solvation = -0.378124 kcal Electronic energy + Delta-G solvation = -20115.777524 eV Core-core repulsion = 16927.024100 eV Total energy + Delta-G solvation = -3188.753424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.99604 -41.44012 -39.64255 -36.88780 -35.56494 -33.90962 -32.16300 -31.09388 -29.86217 -28.13738 -27.11504 -24.19163 -23.62252 -22.54095 -21.94673 -19.30699 -19.28175 -18.69995 -17.37418 -17.11039 -16.84924 -16.65445 -16.34207 -15.66763 -15.38948 -14.71060 -14.67056 -14.53840 -14.41523 -14.11868 -13.76183 -13.58791 -13.33865 -13.16432 -12.82399 -12.79919 -12.54325 -12.33187 -12.10157 -11.57654 -11.46329 -11.09808 -10.60731 -9.82164 -9.78266 -9.32491 -8.64297 -8.37643 -6.30521 0.04113 0.30264 0.96256 1.13667 1.37768 1.46963 1.51141 2.17692 2.36629 2.71492 2.77625 2.80396 3.64807 3.72476 3.85871 3.92774 4.28539 4.42628 4.58709 4.61206 4.67931 4.74920 4.80837 4.90754 5.04330 5.11287 5.14642 5.22775 5.35789 5.48316 5.70091 5.81728 5.89020 6.16777 6.22036 6.41455 6.67771 6.76776 6.83181 6.91705 7.05104 8.32360 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017289 B = 0.006386 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.096487 B = 4383.325138 C = 5539.474949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.247 4.247 3 C 0.323 3.677 4 F -0.118 7.118 5 N -0.578 5.578 6 C 0.164 3.836 7 C -0.260 4.260 8 C 0.265 3.735 9 N -0.632 5.632 10 C 0.017 3.983 11 C -0.112 4.112 12 C -0.214 4.214 13 C -0.118 4.118 14 C -0.169 4.169 15 C 0.073 3.927 16 C -0.485 4.485 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.827 5.827 20 Si 0.975 3.025 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.264 1.264 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.194 0.806 28 H 0.146 0.854 29 H 0.408 0.592 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 5.573 -3.777 6.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.257 4.257 3 C 0.170 3.830 4 F -0.097 7.097 5 N -0.297 5.297 6 C 0.010 3.990 7 C -0.285 4.285 8 C 0.150 3.850 9 N -0.249 5.249 10 C -0.078 4.078 11 C -0.133 4.133 12 C -0.233 4.233 13 C -0.137 4.137 14 C -0.189 4.189 15 C 0.069 3.931 16 C -0.515 4.515 17 H 0.096 0.904 18 C -0.179 4.179 19 N -0.453 5.453 20 Si 0.797 3.203 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.188 1.188 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.211 0.789 28 H 0.164 0.836 29 H 0.246 0.754 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.366 6.101 -3.601 7.094 hybrid contribution -1.370 -0.909 0.759 1.811 sum -1.737 5.192 -2.842 6.169 Atomic orbital electron populations 1.20503 0.88151 1.03723 1.03084 1.20028 0.98914 0.90340 1.16396 1.17699 0.87313 0.80326 0.97632 1.91540 1.78380 1.46394 1.93396 1.67060 1.06257 1.34046 1.22370 1.22564 1.00709 0.84723 0.90990 1.22160 0.93233 1.01102 1.12046 1.17937 0.92081 0.85395 0.89576 1.41499 1.08691 1.00939 1.73791 1.17720 1.00173 0.86152 1.03784 1.20774 0.97215 0.98036 0.97242 1.20634 1.04147 0.93758 1.04793 1.20765 0.97677 0.98436 0.96836 1.21042 0.99329 0.97864 1.00656 1.17821 0.93792 0.90878 0.90601 1.19505 1.06007 1.20890 1.05078 0.90432 1.26614 0.99625 0.92941 0.98682 1.69850 1.28717 1.23152 1.23618 0.85336 0.78216 0.79166 0.77589 1.18272 1.19684 1.18814 0.90712 0.89831 0.91036 0.78904 0.83609 0.75402 0.86438 0.85833 0.87116 0.87529 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.52 9.41 71.24 0.67 -1.85 16 2 C -0.25 -7.93 5.92 -19.59 -0.12 -8.05 16 3 C 0.32 10.71 8.36 84.65 0.71 11.42 16 4 F -0.12 -3.71 16.51 44.97 0.74 -2.97 16 5 N -0.58 -19.28 10.37 -197.23 -2.05 -21.33 16 6 C 0.16 4.87 11.17 84.56 0.94 5.81 16 7 C -0.26 -8.71 8.12 22.50 0.18 -8.52 16 8 C 0.27 9.33 6.46 38.57 0.25 9.58 16 9 N -0.63 -23.86 4.93 -178.87 -0.88 -24.74 16 10 C 0.02 0.71 5.95 38.99 0.23 0.94 16 11 C -0.11 -4.39 7.37 22.38 0.16 -4.22 16 12 C -0.21 -8.20 10.03 22.41 0.22 -7.98 16 13 C -0.12 -4.98 9.97 22.01 0.22 -4.76 16 14 C -0.17 -8.16 8.62 22.46 0.19 -7.97 16 15 C 0.07 3.55 5.58 -21.17 -0.12 3.43 16 16 C -0.48 -23.64 8.65 23.36 0.20 -23.44 16 17 H 0.08 3.55 6.95 -2.91 -0.02 3.53 16 18 C 0.04 1.70 5.24 85.24 0.45 2.14 16 19 N -0.83 -41.02 10.78 21.82 0.24 -40.78 16 20 Si 0.98 36.27 29.58 68.60 2.03 38.30 16 21 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 22 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 1.90 7.65 -2.39 -0.02 1.89 16 26 H 0.07 1.75 6.74 -2.39 -0.02 1.73 16 27 H 0.19 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.15 5.07 5.37 -2.91 -0.02 5.05 16 29 H 0.41 14.47 6.03 -92.71 -0.56 13.91 16 30 H 0.12 4.11 6.60 -2.91 -0.02 4.09 16 31 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.11 5.48 6.12 -2.91 -0.02 5.46 16 34 H 0.29 13.04 8.30 -92.71 -0.77 12.27 16 Total: -1.00 -54.51 290.41 4.88 -49.63 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.60 Total: 35.34 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 4.20 Total: -33.46 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -2.69 Total: -86.85 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.74 Total: -2.97 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -54.51 4.88 -49.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212843925.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.256 kcal (2) G-P(sol) polarization free energy of solvation -54.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds