Wall clock time and date at job start Mon Mar 30 2020 01:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37844 * 120.43754 * 2 1 4 4 N 1.32026 * 120.87931 * 180.02562 * 3 2 1 5 5 C 1.32184 * 121.88070 * 359.97438 * 4 3 2 6 6 F 1.35094 * 119.60950 * 179.97438 * 5 4 3 7 7 C 1.38222 * 120.78187 * 0.02562 * 5 4 3 8 8 C 1.39406 * 119.03857 * 0.27255 * 7 5 4 9 9 N 1.39189 * 120.84719 * 179.72612 * 8 7 5 10 10 C 1.38884 * 120.00123 * 256.43418 * 9 8 7 11 11 C 1.39586 * 119.84188 * 5.11122 * 10 9 8 12 12 C 1.36322 * 120.16135 * 179.75812 * 11 10 9 13 13 C 1.40894 * 119.83561 * 0.53248 * 12 11 10 14 14 C 1.41116 * 120.15587 * 179.69401 * 13 12 11 15 15 H 1.07997 * 120.00276 * 203.79383 * 14 13 12 16 16 C 1.39868 * 119.99774 * 23.79626 * 14 13 12 17 17 N 1.30900 * 119.99600 * 19.42854 * 16 14 13 18 18 Si 1.86794 * 119.99916 * 199.42358 * 16 14 13 19 19 H 1.48501 * 109.46879 * 90.00549 * 18 16 14 20 20 H 1.48502 * 109.47313 * 209.99880 * 18 16 14 21 21 H 1.48494 * 109.47381 * 330.00340 * 18 16 14 22 22 C 1.40894 * 119.69191 * 359.72268 * 13 12 11 23 23 C 1.36330 * 119.83755 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.47661 * 89.99873 * 1 2 3 25 25 H 1.09009 * 109.46986 * 209.99780 * 1 2 3 26 26 H 1.08997 * 109.47082 * 329.99691 * 1 2 3 27 27 H 1.08003 * 119.56395 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.48026 * 179.97438 * 7 5 4 29 29 H 0.97001 * 120.00188 * 76.44430 * 9 8 7 30 30 H 1.08006 * 119.91694 * 0.02562 * 11 10 9 31 31 H 1.08004 * 120.08235 * 180.28023 * 12 11 10 32 32 H 0.97007 * 119.99566 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.08465 * 179.97438 * 22 13 12 34 34 H 1.07998 * 119.91737 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2054 1.1885 0.0000 4 7 3.5256 1.1986 -0.0005 5 6 4.2323 0.0816 -0.0005 6 9 5.5818 0.1456 -0.0016 7 6 3.6071 -1.1511 -0.0006 8 6 2.2140 -1.2032 -0.0063 9 7 1.5455 -2.4241 -0.0123 10 6 0.9693 -2.8946 -1.1851 11 6 1.1531 -2.1947 -2.3787 12 6 0.5946 -2.6533 -3.5346 13 6 -0.1791 -3.8307 -3.5203 14 6 -0.7657 -4.3080 -4.7117 15 1 -1.6364 -4.9455 -4.6672 16 6 -0.2195 -3.9556 -5.9501 17 7 1.0133 -3.5214 -6.0219 18 14 -1.2493 -4.1045 -7.5015 19 1 -1.9745 -2.8305 -7.7384 20 1 -0.3633 -4.3921 -8.6580 21 1 -2.2286 -5.2093 -7.3414 22 6 -0.3648 -4.5291 -2.3108 23 6 0.2048 -4.0622 -1.1636 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6654 2.1238 -0.0004 28 1 4.1893 -2.0607 -0.0010 29 1 1.4820 -2.9462 0.8027 30 1 1.7429 -1.2899 -2.3873 31 1 0.7414 -2.1132 -4.4583 32 1 1.3920 -3.2766 -6.8808 33 1 -0.9570 -5.4321 -2.2925 34 1 0.0636 -4.5967 -0.2358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212850814.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:22 Heat of formation + Delta-G solvation = 16.175051 kcal Electronic energy + Delta-G solvation = -19773.154418 eV Core-core repulsion = 16585.118793 eV Total energy + Delta-G solvation = -3188.035625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.88224 -40.30704 -37.98977 -35.59727 -33.41944 -32.49390 -30.95191 -29.60422 -28.57594 -26.80967 -24.83433 -23.25517 -22.00083 -21.24434 -20.31491 -17.85365 -17.37570 -17.32876 -16.53431 -15.83802 -15.33115 -15.15020 -15.08256 -14.10452 -14.01223 -13.61153 -13.58073 -12.92239 -12.74010 -12.45358 -12.25671 -12.16146 -11.97419 -11.82654 -11.49224 -11.13505 -11.01083 -10.64080 -9.87963 -9.73811 -9.67144 -9.46234 -9.30402 -8.83360 -8.66392 -7.65052 -6.84527 -6.65050 -4.20335 1.01379 1.15620 2.77899 2.96579 3.08484 3.11407 3.21379 3.54678 3.68978 3.93836 3.95939 4.59054 4.74000 4.91499 4.92063 5.40039 5.45349 5.66299 5.75105 5.81177 5.87896 6.10191 6.15011 6.26251 6.39767 6.59689 6.78109 6.86281 7.04207 7.19660 7.38853 7.52441 7.65748 7.70945 8.00785 8.11214 8.30406 8.40156 8.61596 8.90734 8.97705 10.21297 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023924 B = 0.004606 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.111301 B = 6077.732885 C = 6426.447816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.153 4.153 3 C 0.136 3.864 4 N -0.522 5.522 5 C 0.302 3.698 6 F -0.118 7.118 7 C -0.205 4.205 8 C 0.252 3.748 9 N -0.709 5.709 10 C 0.066 3.934 11 C -0.143 4.143 12 C -0.132 4.132 13 C 0.086 3.914 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.798 5.798 18 Si 0.905 3.095 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.195 4.195 23 C -0.138 4.138 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.165 0.835 28 H 0.146 0.854 29 H 0.400 0.600 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.279 0.721 33 H 0.094 0.906 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 5.417 9.376 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.158 4.158 3 C -0.021 4.021 4 N -0.237 5.237 5 C 0.149 3.851 6 F -0.097 7.097 7 C -0.228 4.228 8 C 0.148 3.852 9 N -0.343 5.343 10 C -0.027 4.027 11 C -0.164 4.164 12 C -0.152 4.152 13 C 0.083 3.917 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.424 5.424 18 Si 0.729 3.271 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.216 4.216 23 C -0.159 4.159 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.182 0.818 28 H 0.164 0.836 29 H 0.236 0.764 30 H 0.102 0.898 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.208 6.344 9.086 11.147 hybrid contribution -0.325 -1.056 -0.544 1.231 sum 0.883 5.288 8.542 10.085 Atomic orbital electron populations 1.20589 0.89283 1.02561 1.03347 1.21487 0.98747 0.93311 1.02245 1.22229 0.87318 0.97739 0.94828 1.66989 1.09517 1.30559 1.16657 1.17914 0.78401 0.89692 0.99132 1.91594 1.27632 1.96992 1.93492 1.22303 0.95885 0.97915 1.06735 1.17288 0.88918 0.87014 0.91973 1.41115 1.62895 1.19343 1.10899 1.17165 1.03086 0.97763 0.84709 1.20061 1.04203 0.99831 0.92308 1.20913 1.01137 0.96854 0.96283 1.17546 0.91383 0.90567 0.92176 1.19444 1.12243 1.27668 0.90069 0.90597 1.25857 0.94310 0.92979 1.00975 1.69860 1.12209 1.32838 1.27471 0.86369 0.80570 0.79691 0.80420 1.19364 1.20445 1.18694 1.20521 1.06967 1.00814 0.93259 1.19787 1.01920 0.96690 0.97525 0.90293 0.90824 0.91797 0.81819 0.83637 0.76388 0.89798 0.86348 0.90999 0.88754 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.49 36.01 0.34 -0.93 16 2 C -0.15 -2.14 5.49 -104.27 -0.57 -2.72 16 3 C 0.14 1.80 10.85 -17.61 -0.19 1.61 16 4 N -0.52 -8.08 10.37 -13.69 -0.14 -8.22 16 5 C 0.30 4.71 8.40 -17.41 -0.15 4.57 16 6 F -0.12 -1.82 17.29 2.25 0.04 -1.78 16 7 C -0.20 -3.09 10.03 -39.15 -0.39 -3.48 16 8 C 0.25 3.86 4.50 -83.59 -0.38 3.49 16 9 N -0.71 -11.32 4.56 -8.15 -0.04 -11.35 16 10 C 0.07 1.33 6.26 -83.66 -0.52 0.80 16 11 C -0.14 -3.19 9.14 -39.77 -0.36 -3.55 16 12 C -0.13 -3.31 8.65 -39.27 -0.34 -3.65 16 13 C 0.09 2.21 5.58 -106.80 -0.60 1.62 16 14 C -0.46 -12.05 9.03 -37.88 -0.34 -12.40 16 15 H 0.08 1.90 7.92 -52.49 -0.42 1.49 16 16 C 0.08 1.88 5.10 -17.34 -0.09 1.79 16 17 N -0.80 -20.55 11.00 55.54 0.61 -19.94 16 18 Si 0.90 18.53 29.60 -169.99 -5.03 13.50 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 22 C -0.20 -4.53 9.74 -39.26 -0.38 -4.91 16 23 C -0.14 -2.83 9.82 -39.77 -0.39 -3.22 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.07 0.97 7.56 -51.92 -0.39 0.58 16 26 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 28 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.40 5.43 8.82 -40.82 -0.36 5.07 16 30 H 0.08 1.83 6.75 -52.48 -0.35 1.47 16 31 H 0.12 3.13 6.15 -52.48 -0.32 2.81 16 32 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 33 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 34 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 300.17 15.07 4.52 4.52 Total: -1.00 -27.32 300.17 -7.91 -35.23 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -3.51 Total: 9.02 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -4.36 Total: -20.98 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.43 Total: -39.51 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.32 -7.91 -35.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212850814.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.407 kcal (2) G-P(sol) polarization free energy of solvation -27.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds