Wall clock time and date at job start Mon Mar 30 2020 01:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37844 * 120.43754 * 2 1 4 4 N 1.32026 * 120.87931 * 180.02562 * 3 2 1 5 5 C 1.32184 * 121.88070 * 359.97438 * 4 3 2 6 6 F 1.35094 * 119.60950 * 179.97438 * 5 4 3 7 7 C 1.38222 * 120.78187 * 0.02562 * 5 4 3 8 8 C 1.39406 * 119.03857 * 0.27255 * 7 5 4 9 9 N 1.39189 * 120.84719 * 179.72612 * 8 7 5 10 10 C 1.38884 * 120.00123 * 256.43418 * 9 8 7 11 11 C 1.39586 * 119.84188 * 5.11122 * 10 9 8 12 12 C 1.36322 * 120.16135 * 179.75812 * 11 10 9 13 13 C 1.40894 * 119.83561 * 0.53248 * 12 11 10 14 14 C 1.41116 * 120.15587 * 179.69401 * 13 12 11 15 15 H 1.07997 * 120.00276 * 203.79383 * 14 13 12 16 16 C 1.39868 * 119.99774 * 23.79626 * 14 13 12 17 17 N 1.30900 * 119.99600 * 19.42854 * 16 14 13 18 18 Si 1.86794 * 119.99916 * 199.42358 * 16 14 13 19 19 H 1.48501 * 109.46879 * 90.00549 * 18 16 14 20 20 H 1.48502 * 109.47313 * 209.99880 * 18 16 14 21 21 H 1.48494 * 109.47381 * 330.00340 * 18 16 14 22 22 C 1.40894 * 119.69191 * 359.72268 * 13 12 11 23 23 C 1.36330 * 119.83755 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.47661 * 89.99873 * 1 2 3 25 25 H 1.09009 * 109.46986 * 209.99780 * 1 2 3 26 26 H 1.08997 * 109.47082 * 329.99691 * 1 2 3 27 27 H 1.08003 * 119.56395 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.48026 * 179.97438 * 7 5 4 29 29 H 0.97001 * 120.00188 * 76.44430 * 9 8 7 30 30 H 1.08006 * 119.91694 * 0.02562 * 11 10 9 31 31 H 1.08004 * 120.08235 * 180.28023 * 12 11 10 32 32 H 0.97007 * 119.99566 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.08465 * 179.97438 * 22 13 12 34 34 H 1.07998 * 119.91737 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2054 1.1885 0.0000 4 7 3.5256 1.1986 -0.0005 5 6 4.2323 0.0816 -0.0005 6 9 5.5818 0.1456 -0.0016 7 6 3.6071 -1.1511 -0.0006 8 6 2.2140 -1.2032 -0.0063 9 7 1.5455 -2.4241 -0.0123 10 6 0.9693 -2.8946 -1.1851 11 6 1.1531 -2.1947 -2.3787 12 6 0.5946 -2.6533 -3.5346 13 6 -0.1791 -3.8307 -3.5203 14 6 -0.7657 -4.3080 -4.7117 15 1 -1.6364 -4.9455 -4.6672 16 6 -0.2195 -3.9556 -5.9501 17 7 1.0133 -3.5214 -6.0219 18 14 -1.2493 -4.1045 -7.5015 19 1 -1.9745 -2.8305 -7.7384 20 1 -0.3633 -4.3921 -8.6580 21 1 -2.2286 -5.2093 -7.3414 22 6 -0.3648 -4.5291 -2.3108 23 6 0.2048 -4.0622 -1.1636 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6654 2.1238 -0.0004 28 1 4.1893 -2.0607 -0.0010 29 1 1.4820 -2.9462 0.8027 30 1 1.7429 -1.2899 -2.3873 31 1 0.7414 -2.1132 -4.4583 32 1 1.3920 -3.2766 -6.8808 33 1 -0.9570 -5.4321 -2.2925 34 1 0.0636 -4.5967 -0.2358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212850814.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:22 Heat of formation + Delta-G solvation = 2.036239 kcal Electronic energy + Delta-G solvation = -19773.767523 eV Core-core repulsion = 16585.118793 eV Total energy + Delta-G solvation = -3188.648730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.08095 -41.52505 -39.62663 -37.10694 -35.11669 -33.66016 -32.35901 -31.39297 -30.21778 -27.94297 -26.52099 -24.55217 -23.25886 -22.98165 -21.92231 -19.25701 -19.04904 -18.57895 -18.06684 -17.08345 -16.84678 -16.65712 -16.28222 -15.70850 -15.21703 -14.88195 -14.83718 -14.53869 -14.39306 -13.89542 -13.83780 -13.50218 -13.35183 -13.16267 -12.88657 -12.77750 -12.68137 -12.32915 -11.62670 -11.31817 -11.24492 -10.83995 -10.76298 -10.47652 -9.80412 -9.44554 -8.63724 -8.36342 -6.08246 -0.13634 -0.03288 1.05085 1.15684 1.40436 1.52643 1.56015 2.24914 2.33005 2.53955 2.70462 2.79384 3.62857 3.78631 3.79948 3.83625 4.23070 4.34903 4.37753 4.48417 4.69306 4.79560 4.82842 5.01491 5.08303 5.19116 5.22340 5.31087 5.39383 5.50440 5.68116 5.75644 5.89755 6.15092 6.33356 6.57388 6.58642 6.79314 7.00001 7.04104 7.16704 8.41560 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023924 B = 0.004606 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.111301 B = 6077.732885 C = 6426.447816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.151 4.151 3 C 0.142 3.858 4 N -0.536 5.536 5 C 0.289 3.711 6 F -0.121 7.121 7 C -0.205 4.205 8 C 0.231 3.769 9 N -0.696 5.696 10 C 0.098 3.902 11 C -0.150 4.150 12 C -0.152 4.152 13 C 0.049 3.951 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.836 5.836 18 Si 0.975 3.025 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.200 4.200 23 C -0.139 4.139 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.201 0.799 28 H 0.153 0.847 29 H 0.415 0.585 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.283 0.717 33 H 0.102 0.898 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 6.015 10.836 12.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C -0.015 4.015 4 N -0.251 5.251 5 C 0.136 3.864 6 F -0.100 7.100 7 C -0.228 4.228 8 C 0.128 3.872 9 N -0.330 5.330 10 C 0.002 3.998 11 C -0.171 4.171 12 C -0.172 4.172 13 C 0.046 3.954 14 C -0.532 4.532 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.463 5.463 18 Si 0.797 3.203 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.182 1.182 22 C -0.220 4.220 23 C -0.161 4.161 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.218 0.782 28 H 0.170 0.830 29 H 0.254 0.746 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.647 6.945 10.597 12.686 hybrid contribution -0.075 -1.154 -0.760 1.384 sum 0.571 5.791 9.837 11.429 Atomic orbital electron populations 1.20610 0.88145 1.04138 1.02616 1.21675 0.99534 0.93040 1.01244 1.22819 0.86646 0.98959 0.93085 1.67056 1.10542 1.30615 1.16872 1.18033 0.78444 0.90037 0.99904 1.91582 1.27859 1.97022 1.93585 1.22328 0.95908 0.98137 1.06432 1.17454 0.89121 0.87147 0.93451 1.40934 1.62045 1.19851 1.10155 1.17155 1.00817 0.96542 0.85242 1.20049 1.04315 1.00287 0.92484 1.20789 1.02669 0.97278 0.96455 1.17842 0.92766 0.91441 0.93324 1.19665 1.12964 1.29293 0.91314 0.90925 1.26635 0.95116 0.92349 1.03776 1.69928 1.13655 1.34378 1.28363 0.85308 0.78862 0.79731 0.76440 1.18926 1.19769 1.18169 1.20752 1.06957 1.00912 0.93404 1.20096 1.01014 0.96801 0.98190 0.91984 0.91330 0.88314 0.78225 0.82956 0.74603 0.89561 0.88706 0.90654 0.88004 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 9.49 71.24 0.68 -1.51 16 2 C -0.15 -3.82 5.49 -19.64 -0.11 -3.93 16 3 C 0.14 3.35 10.85 84.57 0.92 4.27 16 4 N -0.54 -15.49 10.37 -197.23 -2.05 -17.53 16 5 C 0.29 8.61 8.40 84.64 0.71 9.32 16 6 F -0.12 -3.64 17.29 44.97 0.78 -2.86 16 7 C -0.20 -5.84 10.03 22.55 0.23 -5.62 16 8 C 0.23 6.59 4.50 38.57 0.17 6.76 16 9 N -0.70 -20.39 4.56 -179.71 -0.82 -21.21 16 10 C 0.10 3.75 6.26 38.67 0.24 3.99 16 11 C -0.15 -6.66 9.14 22.15 0.20 -6.46 16 12 C -0.15 -7.86 8.65 22.47 0.19 -7.66 16 13 C 0.05 2.59 5.58 -21.27 -0.12 2.47 16 14 C -0.50 -26.96 9.03 23.37 0.21 -26.75 16 15 H 0.07 3.77 7.92 -2.91 -0.02 3.74 16 16 C 0.03 1.75 5.10 85.23 0.43 2.19 16 17 N -0.84 -44.68 11.00 21.82 0.24 -44.44 16 18 Si 0.97 38.82 29.60 68.60 2.03 40.85 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 20 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 C -0.20 -9.22 9.74 22.48 0.22 -9.00 16 23 C -0.14 -5.43 9.82 22.15 0.22 -5.22 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.61 7.56 -2.38 -0.02 1.60 16 26 H 0.10 1.52 8.09 -2.39 -0.02 1.50 16 27 H 0.20 3.16 8.06 -2.91 -0.02 3.14 16 28 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 29 H 0.41 9.86 8.82 -92.71 -0.82 9.04 16 30 H 0.09 3.74 6.75 -2.91 -0.02 3.72 16 31 H 0.09 5.28 6.15 -2.91 -0.02 5.26 16 32 H 0.28 13.85 8.30 -92.70 -0.77 13.08 16 33 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -60.45 300.17 4.71 -55.75 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.32 Total: 26.60 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 4.20 Total: -37.15 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -2.62 Total: -83.18 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -60.45 4.71 -55.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212850814.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.786 kcal (2) G-P(sol) polarization free energy of solvation -60.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds