Wall clock time and date at job start Mon Mar 30 2020 01:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37855 * 120.43706 * 2 1 4 4 N 1.32030 * 120.87794 * 179.72377 * 3 2 1 5 5 C 1.32173 * 121.88224 * 0.51975 * 4 3 2 6 6 F 1.35101 * 119.61065 * 179.75631 * 5 4 3 7 7 C 1.38223 * 120.78223 * 359.47959 * 5 4 3 8 8 C 1.39400 * 119.04285 * 0.25264 * 7 5 4 9 9 N 1.39185 * 120.85670 * 180.02562 * 8 7 5 10 10 C 1.38770 * 119.99609 * 258.87319 * 9 8 7 11 11 C 1.38772 * 120.29560 * 2.70124 * 10 9 8 12 12 C 1.38139 * 120.02241 * 179.97438 * 11 10 9 13 13 C 1.38913 * 120.63088 * 359.97438 * 12 11 10 14 14 C 1.36443 * 120.60203 * 0.02562 * 13 12 11 15 15 C 1.40739 * 119.94757 * 359.70515 * 14 13 12 16 16 C 1.41023 * 120.30927 * 180.29646 * 15 14 13 17 17 H 1.08000 * 119.99995 * 207.51230 * 16 15 14 18 18 C 1.39930 * 119.99685 * 27.51467 * 16 15 14 19 19 N 1.30876 * 120.00343 * 13.13581 * 18 16 15 20 20 Si 1.86802 * 119.99581 * 193.13748 * 18 16 15 21 21 H 1.48506 * 109.46829 * 90.00098 * 20 18 16 22 22 H 1.48500 * 109.46905 * 209.99887 * 20 18 16 23 23 H 1.48502 * 109.47307 * 329.99989 * 20 18 16 24 24 H 1.08999 * 109.47092 * 270.02444 * 1 2 3 25 25 H 1.08996 * 109.47454 * 30.02392 * 1 2 3 26 26 H 1.09004 * 109.46399 * 150.02512 * 1 2 3 27 27 H 1.08003 * 119.55895 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.47615 * 180.27826 * 7 5 4 29 29 H 0.97001 * 120.00021 * 78.86473 * 9 8 7 30 30 H 1.07998 * 119.98964 * 359.95226 * 11 10 9 31 31 H 1.07997 * 119.68676 * 179.97438 * 12 11 10 32 32 H 1.08005 * 119.70364 * 180.02562 * 13 12 11 33 33 H 1.07996 * 120.02296 * 179.97438 * 14 13 12 34 34 H 0.96991 * 120.00300 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2054 1.1886 0.0000 4 7 3.5256 1.1987 0.0055 5 6 4.2324 0.0818 0.0009 6 9 5.5819 0.1458 0.0019 7 6 3.6072 -1.1509 0.0010 8 6 2.2141 -1.2032 0.0005 9 7 1.5456 -2.4240 0.0011 10 6 1.0094 -2.9219 -1.1780 11 6 1.1843 -2.2354 -2.3713 12 6 0.6485 -2.7365 -3.5418 13 6 -0.0675 -3.9269 -3.5398 14 6 -0.2550 -4.6227 -2.3812 15 6 0.2849 -4.1379 -1.1753 16 6 0.1011 -4.8541 0.0255 17 1 0.0979 -4.3318 0.9708 18 6 -0.0772 -6.2416 -0.0078 19 7 0.1791 -6.9083 -1.1045 20 14 -0.6810 -7.1424 1.5133 21 1 -2.1648 -7.2010 1.4974 22 1 -0.1312 -8.5218 1.5225 23 1 -0.2271 -6.4204 2.7290 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3632 -0.8903 -0.5135 27 1 1.6653 2.1239 -0.0004 28 1 4.1895 -2.0604 0.0018 29 1 1.4546 -2.9268 0.8257 30 1 1.7391 -1.3090 -2.3848 31 1 0.7875 -2.1976 -4.4673 32 1 -0.4795 -4.3051 -4.4637 33 1 -0.8135 -5.5470 -2.3904 34 1 0.0553 -7.8700 -1.1276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212851838.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:24 Heat of formation + Delta-G solvation = 15.339339 kcal Electronic energy + Delta-G solvation = -20084.343961 eV Core-core repulsion = 16896.272097 eV Total energy + Delta-G solvation = -3188.071864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.83668 -40.24851 -38.00175 -35.24023 -33.64218 -32.48997 -31.07199 -29.54895 -28.00818 -26.64710 -25.20684 -23.37276 -22.01517 -21.00306 -20.22820 -17.74092 -17.42339 -17.23247 -16.44809 -15.81454 -15.27066 -15.07108 -14.97294 -14.18245 -14.00916 -13.59867 -13.55118 -12.80481 -12.75102 -12.51439 -12.41524 -12.20881 -11.80715 -11.71386 -11.37557 -11.16591 -11.01326 -10.53822 -9.82452 -9.73030 -9.57289 -9.52384 -9.25656 -9.15287 -8.60931 -7.47281 -6.83557 -6.53919 -4.31625 1.06579 1.22004 2.73587 3.00754 3.04486 3.05673 3.15937 3.63118 3.73243 3.89383 4.09457 4.62341 4.78134 4.98005 5.00336 5.48948 5.53090 5.60230 5.79857 5.85595 5.93547 6.13244 6.32727 6.35116 6.48455 6.53004 6.72813 6.89182 7.05658 7.16118 7.34994 7.59078 7.69995 7.75175 8.06157 8.07262 8.27727 8.54031 8.62823 8.83879 8.94036 10.19972 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.005623 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.841773 B = 4978.371909 C = 5460.807577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.153 4.153 3 C 0.133 3.867 4 N -0.523 5.523 5 C 0.301 3.699 6 F -0.119 7.119 7 C -0.203 4.203 8 C 0.252 3.748 9 N -0.701 5.701 10 C 0.095 3.905 11 C -0.156 4.156 12 C -0.199 4.199 13 C -0.136 4.136 14 C -0.135 4.135 15 C 0.078 3.922 16 C -0.467 4.467 17 H 0.072 0.928 18 C 0.076 3.924 19 N -0.801 5.801 20 Si 0.907 3.093 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.164 0.836 28 H 0.147 0.853 29 H 0.410 0.590 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 8.078 3.050 8.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.158 4.158 3 C -0.023 4.023 4 N -0.238 5.238 5 C 0.147 3.853 6 F -0.098 7.098 7 C -0.227 4.227 8 C 0.148 3.852 9 N -0.335 5.335 10 C -0.001 4.001 11 C -0.178 4.178 12 C -0.219 4.219 13 C -0.156 4.156 14 C -0.155 4.155 15 C 0.073 3.927 16 C -0.498 4.498 17 H 0.090 0.910 18 C -0.140 4.140 19 N -0.428 5.428 20 Si 0.732 3.268 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.189 1.189 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.181 0.819 28 H 0.165 0.835 29 H 0.250 0.750 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.169 8.692 2.893 9.235 hybrid contribution -0.213 -1.481 0.872 1.732 sum 0.955 7.211 3.765 8.190 Atomic orbital electron populations 1.20663 0.89355 1.03961 1.02430 1.21526 0.98748 0.93290 1.02198 1.22218 0.87320 0.97681 0.95112 1.66975 1.09510 1.30571 1.16771 1.17924 0.78358 0.89707 0.99312 1.91592 1.27669 1.96998 1.93526 1.22387 0.96031 0.97918 1.06328 1.17405 0.89008 0.87254 0.91498 1.41208 1.62731 1.19128 1.10386 1.17747 1.00691 0.97423 0.84236 1.20063 1.05669 0.99811 0.92294 1.20164 1.06999 0.98793 0.95923 1.20367 1.01870 0.96054 0.97298 1.20892 1.02160 1.00815 0.91655 1.17198 0.91323 0.89840 0.94299 1.19147 1.45390 0.91755 0.93504 0.90982 1.25771 0.92965 0.98020 0.97264 1.69805 1.35818 1.09185 1.27943 0.86342 0.79787 0.78753 0.81958 1.19428 1.20428 1.18877 0.91194 0.91648 0.89548 0.81907 0.83514 0.74971 0.89665 0.89481 0.89547 0.86112 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.82 36.01 0.35 -1.08 16 2 C -0.15 -2.25 5.54 -104.27 -0.58 -2.83 16 3 C 0.13 1.81 10.85 -17.61 -0.19 1.62 16 4 N -0.52 -8.21 10.37 -13.69 -0.14 -8.35 16 5 C 0.30 4.82 8.40 -17.41 -0.15 4.67 16 6 F -0.12 -1.87 17.29 2.25 0.04 -1.83 16 7 C -0.20 -3.27 10.03 -39.15 -0.39 -3.66 16 8 C 0.25 4.20 4.50 -83.60 -0.38 3.82 16 9 N -0.70 -13.14 4.75 -7.89 -0.04 -13.17 16 10 C 0.09 2.07 5.45 -83.26 -0.45 1.62 16 11 C -0.16 -3.35 8.93 -39.42 -0.35 -3.70 16 12 C -0.20 -4.31 10.03 -39.37 -0.40 -4.71 16 13 C -0.14 -3.09 9.96 -39.98 -0.40 -3.49 16 14 C -0.13 -3.32 8.61 -39.28 -0.34 -3.66 16 15 C 0.08 1.90 5.57 -106.64 -0.59 1.31 16 16 C -0.47 -11.27 8.46 -37.89 -0.32 -11.59 16 17 H 0.07 1.63 6.77 -52.49 -0.36 1.28 16 18 C 0.08 1.81 5.21 -17.33 -0.09 1.72 16 19 N -0.80 -19.91 10.89 55.55 0.60 -19.31 16 20 Si 0.91 17.88 29.58 -169.99 -5.03 12.85 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.09 1.42 6.20 -51.93 -0.32 1.10 16 27 H 0.16 1.65 8.06 -52.48 -0.42 1.22 16 28 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.41 7.56 7.10 -40.82 -0.29 7.28 16 30 H 0.09 1.74 6.77 -52.49 -0.36 1.39 16 31 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.12 3.10 6.21 -52.49 -0.33 2.77 16 34 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 295.37 15.07 4.45 4.45 Total: -1.00 -26.04 295.37 -7.70 -33.75 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -3.32 Total: 11.57 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -4.27 Total: -19.95 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.43 Total: -40.83 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.04 -7.70 -33.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212851838.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.086 kcal (2) G-P(sol) polarization free energy of solvation -26.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds