Wall clock time and date at job start Mon Mar 30 2020 01:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37855 * 120.43706 * 2 1 4 4 N 1.32030 * 120.87794 * 179.72377 * 3 2 1 5 5 C 1.32173 * 121.88224 * 0.51975 * 4 3 2 6 6 F 1.35101 * 119.61065 * 179.75631 * 5 4 3 7 7 C 1.38223 * 120.78223 * 359.47959 * 5 4 3 8 8 C 1.39400 * 119.04285 * 0.25264 * 7 5 4 9 9 N 1.39185 * 120.85670 * 180.02562 * 8 7 5 10 10 C 1.38770 * 119.99609 * 258.87319 * 9 8 7 11 11 C 1.38772 * 120.29560 * 2.70124 * 10 9 8 12 12 C 1.38139 * 120.02241 * 179.97438 * 11 10 9 13 13 C 1.38913 * 120.63088 * 359.97438 * 12 11 10 14 14 C 1.36443 * 120.60203 * 0.02562 * 13 12 11 15 15 C 1.40739 * 119.94757 * 359.70515 * 14 13 12 16 16 C 1.41023 * 120.30927 * 180.29646 * 15 14 13 17 17 H 1.08000 * 119.99995 * 207.51230 * 16 15 14 18 18 C 1.39930 * 119.99685 * 27.51467 * 16 15 14 19 19 N 1.30876 * 120.00343 * 13.13581 * 18 16 15 20 20 Si 1.86802 * 119.99581 * 193.13748 * 18 16 15 21 21 H 1.48506 * 109.46829 * 90.00098 * 20 18 16 22 22 H 1.48500 * 109.46905 * 209.99887 * 20 18 16 23 23 H 1.48502 * 109.47307 * 329.99989 * 20 18 16 24 24 H 1.08999 * 109.47092 * 270.02444 * 1 2 3 25 25 H 1.08996 * 109.47454 * 30.02392 * 1 2 3 26 26 H 1.09004 * 109.46399 * 150.02512 * 1 2 3 27 27 H 1.08003 * 119.55895 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.47615 * 180.27826 * 7 5 4 29 29 H 0.97001 * 120.00021 * 78.86473 * 9 8 7 30 30 H 1.07998 * 119.98964 * 359.95226 * 11 10 9 31 31 H 1.07997 * 119.68676 * 179.97438 * 12 11 10 32 32 H 1.08005 * 119.70364 * 180.02562 * 13 12 11 33 33 H 1.07996 * 120.02296 * 179.97438 * 14 13 12 34 34 H 0.96991 * 120.00300 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2054 1.1886 0.0000 4 7 3.5256 1.1987 0.0055 5 6 4.2324 0.0818 0.0009 6 9 5.5819 0.1458 0.0019 7 6 3.6072 -1.1509 0.0010 8 6 2.2141 -1.2032 0.0005 9 7 1.5456 -2.4240 0.0011 10 6 1.0094 -2.9219 -1.1780 11 6 1.1843 -2.2354 -2.3713 12 6 0.6485 -2.7365 -3.5418 13 6 -0.0675 -3.9269 -3.5398 14 6 -0.2550 -4.6227 -2.3812 15 6 0.2849 -4.1379 -1.1753 16 6 0.1011 -4.8541 0.0255 17 1 0.0979 -4.3318 0.9708 18 6 -0.0772 -6.2416 -0.0078 19 7 0.1791 -6.9083 -1.1045 20 14 -0.6810 -7.1424 1.5133 21 1 -2.1648 -7.2010 1.4974 22 1 -0.1312 -8.5218 1.5225 23 1 -0.2271 -6.4204 2.7290 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3632 -0.8903 -0.5135 27 1 1.6653 2.1239 -0.0004 28 1 4.1895 -2.0604 0.0018 29 1 1.4546 -2.9268 0.8257 30 1 1.7391 -1.3090 -2.3848 31 1 0.7875 -2.1976 -4.4673 32 1 -0.4795 -4.3051 -4.4637 33 1 -0.8135 -5.5470 -2.3904 34 1 0.0553 -7.8700 -1.1276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212851838.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:23 Heat of formation + Delta-G solvation = 2.614541 kcal Electronic energy + Delta-G solvation = -20084.895749 eV Core-core repulsion = 16896.272097 eV Total energy + Delta-G solvation = -3188.623653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.07166 -41.52306 -39.63004 -36.72292 -35.40703 -33.68794 -32.49302 -31.29168 -29.59794 -27.83800 -26.96295 -24.68233 -23.29766 -22.71056 -21.82613 -19.17006 -19.05495 -18.51138 -18.06842 -17.08786 -16.70820 -16.63859 -16.27184 -15.81446 -15.17507 -14.85848 -14.84519 -14.42561 -14.39681 -14.16996 -13.84684 -13.31251 -13.29334 -13.03638 -12.88370 -12.78111 -12.67326 -12.14458 -11.53149 -11.39898 -11.09430 -11.01614 -10.81782 -10.56921 -9.78199 -9.27574 -8.58920 -8.22764 -6.13325 -0.13040 -0.02653 1.02405 1.24498 1.42111 1.52339 1.54437 2.24430 2.38798 2.52900 2.72654 2.86080 3.63059 3.78785 3.80215 3.84533 4.25054 4.35504 4.44647 4.63197 4.71072 4.80303 4.82266 4.84810 5.11876 5.20501 5.29017 5.35911 5.41237 5.50867 5.64929 5.84020 5.95838 6.27095 6.31904 6.53654 6.57605 6.85144 6.93315 7.11052 7.18300 8.45842 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.005623 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.841773 B = 4978.371909 C = 5460.807577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.148 4.148 3 C 0.146 3.854 4 N -0.531 5.531 5 C 0.293 3.707 6 F -0.120 7.120 7 C -0.206 4.206 8 C 0.229 3.771 9 N -0.696 5.696 10 C 0.109 3.891 11 C -0.163 4.163 12 C -0.195 4.195 13 C -0.149 4.149 14 C -0.158 4.158 15 C 0.044 3.956 16 C -0.488 4.488 17 H 0.079 0.921 18 C 0.034 3.966 19 N -0.838 5.838 20 Si 0.975 3.025 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.257 1.257 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.206 0.794 28 H 0.145 0.855 29 H 0.409 0.591 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 10.027 3.727 10.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.152 4.152 3 C -0.011 4.011 4 N -0.246 5.246 5 C 0.140 3.860 6 F -0.100 7.100 7 C -0.229 4.229 8 C 0.127 3.873 9 N -0.329 5.329 10 C 0.012 3.988 11 C -0.186 4.186 12 C -0.214 4.214 13 C -0.169 4.169 14 C -0.178 4.178 15 C 0.040 3.960 16 C -0.519 4.519 17 H 0.097 0.903 18 C -0.179 4.179 19 N -0.466 5.466 20 Si 0.797 3.203 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.181 1.181 24 H 0.103 0.897 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.222 0.778 28 H 0.163 0.837 29 H 0.249 0.751 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.038 10.669 3.582 11.302 hybrid contribution -0.125 -1.934 0.620 2.035 sum 0.913 8.735 4.202 9.736 Atomic orbital electron populations 1.20667 0.88269 1.03763 1.03335 1.21681 0.99475 0.92833 1.01200 1.22846 0.86576 0.98761 0.92892 1.67081 1.10479 1.30260 1.16805 1.17952 0.78422 0.89811 0.99839 1.91584 1.27787 1.97007 1.93576 1.22335 0.95919 0.98134 1.06553 1.17583 0.89243 0.87050 0.93468 1.41109 1.62396 1.19976 1.09400 1.17788 0.99176 0.96357 0.85524 1.20219 1.05950 1.00326 0.92097 1.20496 1.05615 0.98240 0.97085 1.20559 1.02411 0.96538 0.97350 1.20867 1.03227 1.00828 0.92914 1.17499 0.92639 0.91296 0.94579 1.19391 1.46335 0.92406 0.93771 0.90316 1.26561 0.92708 0.98610 0.99989 1.69891 1.37203 1.09537 1.29944 0.85301 0.79047 0.77385 0.78545 1.19214 1.20286 1.18073 0.89728 0.88715 0.92769 0.77770 0.83680 0.75119 0.88354 0.86914 0.87914 0.88110 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.47 9.82 71.24 0.70 -1.77 16 2 C -0.15 -3.93 5.54 -19.64 -0.11 -4.04 16 3 C 0.15 3.42 10.85 84.57 0.92 4.33 16 4 N -0.53 -15.19 10.37 -197.22 -2.05 -17.24 16 5 C 0.29 8.91 8.40 84.64 0.71 9.62 16 6 F -0.12 -3.66 17.29 44.97 0.78 -2.88 16 7 C -0.21 -6.42 10.03 22.55 0.23 -6.19 16 8 C 0.23 7.32 4.50 38.57 0.17 7.49 16 9 N -0.70 -25.85 4.75 -178.88 -0.85 -26.70 16 10 C 0.11 4.77 5.45 38.99 0.21 4.98 16 11 C -0.16 -6.85 8.93 22.37 0.20 -6.65 16 12 C -0.19 -8.20 10.03 22.41 0.22 -7.98 16 13 C -0.15 -6.77 9.96 22.01 0.22 -6.55 16 14 C -0.16 -8.01 8.61 22.46 0.19 -7.82 16 15 C 0.04 2.21 5.57 -21.17 -0.12 2.09 16 16 C -0.49 -24.04 8.46 23.36 0.20 -23.84 16 17 H 0.08 3.61 6.77 -2.91 -0.02 3.59 16 18 C 0.03 1.65 5.21 85.25 0.44 2.09 16 19 N -0.84 -43.02 10.89 21.83 0.24 -42.78 16 20 Si 0.97 37.05 29.58 68.60 2.03 39.08 16 21 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 22 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.09 1.70 8.09 -2.39 -0.02 1.69 16 26 H 0.05 1.69 6.20 -2.38 -0.01 1.68 16 27 H 0.21 3.03 8.06 -2.91 -0.02 3.00 16 28 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 29 H 0.41 15.14 7.10 -92.71 -0.66 14.48 16 30 H 0.10 3.83 6.77 -2.91 -0.02 3.81 16 31 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 32 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.10 5.44 6.21 -2.91 -0.02 5.42 16 34 H 0.28 13.33 8.30 -92.72 -0.77 12.56 16 Total: -1.00 -56.46 295.37 4.83 -51.62 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 0.49 Total: 33.13 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 4.19 Total: -34.23 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.66 Total: -86.72 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.78 Total: -2.88 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -56.46 4.83 -51.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212851838.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.239 kcal (2) G-P(sol) polarization free energy of solvation -56.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds