Wall clock time and date at job start Mon Mar 30 2020 01:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37849 * 120.44072 * 2 1 4 4 N 1.32028 * 120.87346 * 180.28616 * 3 2 1 5 5 C 1.32188 * 121.87559 * 359.71705 * 4 3 2 6 6 F 1.35102 * 119.60544 * 180.02562 * 5 4 3 7 7 C 1.38206 * 120.78083 * 0.02562 * 5 4 3 8 8 C 1.39379 * 119.04750 * 359.97438 * 7 5 4 9 9 N 1.39246 * 120.85269 * 179.97438 * 8 7 5 10 10 C 1.39754 * 119.99917 * 255.65848 * 9 8 7 11 11 C 1.39337 * 119.95250 * 5.94643 * 10 9 8 12 12 C 1.38479 * 120.41990 * 179.97438 * 11 10 9 13 13 C 1.37685 * 120.32695 * 0.04418 * 12 11 10 14 14 C 1.40747 * 119.89809 * 359.93025 * 13 12 11 15 15 C 1.41402 * 120.21211 * 180.31859 * 14 13 12 16 16 H 1.08002 * 120.00392 * 151.94645 * 15 14 13 17 17 C 1.39934 * 120.00126 * 331.95012 * 15 14 13 18 18 N 1.30834 * 119.99763 * 348.26304 * 17 15 14 19 19 Si 1.86799 * 120.00264 * 168.26299 * 17 15 14 20 20 H 1.48500 * 109.46970 * 59.99934 * 19 17 15 21 21 H 1.48504 * 109.47019 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47047 * 299.99962 * 19 17 15 23 23 C 1.38282 * 119.94850 * 185.91752 * 10 9 8 24 24 H 1.08997 * 109.47047 * 270.25556 * 1 2 3 25 25 H 1.09003 * 109.46985 * 30.24871 * 1 2 3 26 26 H 1.09000 * 109.47227 * 150.24653 * 1 2 3 27 27 H 1.07992 * 119.55930 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.47829 * 179.97438 * 7 5 4 29 29 H 0.96999 * 119.99688 * 75.66159 * 9 8 7 30 30 H 1.07998 * 119.79387 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.83611 * 180.02562 * 12 11 10 32 32 H 1.08005 * 120.04980 * 180.02562 * 13 12 11 33 33 H 0.96995 * 119.99850 * 180.02562 * 18 17 15 34 34 H 1.08003 * 120.16775 * 0.03216 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2054 1.1885 0.0000 4 7 3.5256 1.1984 -0.0057 5 6 4.2321 0.0812 -0.0060 6 9 5.5816 0.1449 -0.0114 7 6 3.6066 -1.1512 -0.0009 8 6 2.2138 -1.2031 0.0052 9 7 1.5448 -2.4244 0.0099 10 6 0.9411 -2.8949 -1.1594 11 6 1.1135 -2.2048 -2.3575 12 6 0.5201 -2.6627 -3.5220 13 6 -0.2479 -3.8054 -3.5081 14 6 -0.4305 -4.5134 -2.3055 15 6 -1.2124 -5.6914 -2.2850 16 1 -1.0106 -6.4609 -1.5545 17 6 -2.2477 -5.8602 -3.2112 18 7 -2.6444 -4.8490 -3.9404 19 14 -3.0633 -7.5294 -3.4065 20 1 -3.6682 -7.9390 -2.1136 21 1 -4.1230 -7.4442 -4.4434 22 1 -2.0475 -8.5316 -3.8172 23 6 0.1741 -4.0450 -1.1256 24 1 -0.3633 0.0046 1.0276 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3634 -0.8922 -0.5100 27 1 1.6654 2.1237 -0.0004 28 1 4.1887 -2.0610 -0.0016 29 1 1.4978 -2.9484 0.8248 30 1 1.7135 -1.3071 -2.3782 31 1 0.6603 -2.1207 -4.4455 32 1 -0.7082 -4.1587 -4.4190 33 1 -3.3622 -4.9659 -4.5821 34 1 0.0398 -4.5808 -0.1975 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212852998.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:26 Heat of formation + Delta-G solvation = 13.148041 kcal Electronic energy + Delta-G solvation = -19694.524230 eV Core-core repulsion = 16506.357344 eV Total energy + Delta-G solvation = -3188.166886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.93394 -40.35985 -37.92682 -35.57663 -33.41666 -32.54718 -31.04995 -29.84681 -27.82956 -26.61417 -25.31116 -23.41706 -22.07859 -20.99487 -20.43253 -18.08454 -17.55592 -17.21179 -16.06614 -15.67792 -15.52206 -15.20033 -14.84529 -14.49306 -14.10803 -13.64058 -13.62170 -13.00180 -12.85649 -12.52401 -12.29610 -12.24483 -11.83389 -11.69708 -11.34629 -11.17635 -10.81419 -10.57104 -10.03562 -9.74091 -9.68939 -9.45843 -9.36575 -9.01214 -8.68852 -7.50979 -6.78085 -6.54496 -4.44064 0.96625 1.09856 2.76928 3.03417 3.05236 3.07400 3.20865 3.48344 3.63529 3.84033 3.92308 4.60518 4.69763 4.88290 4.88789 5.33618 5.42728 5.65345 5.71665 5.79891 5.85017 6.16717 6.25591 6.36385 6.44766 6.59697 6.87426 6.91361 7.00874 7.13138 7.22326 7.60547 7.65982 7.73655 8.00084 8.08353 8.28533 8.34634 8.63277 8.87178 8.94468 10.18854 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.037659 B = 0.004031 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.327361 B = 6944.291552 C = 7084.639227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.148 4.148 3 C 0.136 3.864 4 N -0.521 5.521 5 C 0.302 3.698 6 F -0.118 7.118 7 C -0.204 4.204 8 C 0.249 3.751 9 N -0.714 5.714 10 C 0.211 3.789 11 C -0.284 4.284 12 C -0.078 4.078 13 C -0.184 4.184 14 C 0.139 3.861 15 C -0.463 4.463 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.797 5.797 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.273 4.273 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.166 0.834 28 H 0.147 0.853 29 H 0.404 0.596 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.280 0.720 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.643 6.189 6.099 9.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.152 4.152 3 C -0.021 4.021 4 N -0.236 5.236 5 C 0.148 3.852 6 F -0.097 7.097 7 C -0.227 4.227 8 C 0.146 3.854 9 N -0.346 5.346 10 C 0.116 3.884 11 C -0.307 4.307 12 C -0.097 4.097 13 C -0.205 4.205 14 C 0.136 3.864 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.423 5.423 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.296 4.296 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.183 0.817 28 H 0.164 0.836 29 H 0.242 0.758 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.991 7.130 5.820 10.470 hybrid contribution -0.499 -1.607 0.162 1.691 sum 4.492 5.523 5.982 9.299 Atomic orbital electron populations 1.20704 0.89160 1.04462 1.02347 1.21464 0.98840 0.93161 1.01755 1.22254 0.87278 0.97775 0.94800 1.67000 1.09531 1.30529 1.16537 1.17892 0.78412 0.89662 0.99226 1.91598 1.27587 1.96990 1.93506 1.22242 0.95727 0.97987 1.06767 1.17330 0.88955 0.86948 0.92178 1.41738 1.61383 1.19487 1.12015 1.17372 0.93191 0.93753 0.84070 1.19884 1.13788 1.04365 0.92641 1.20471 0.97110 0.96533 0.95563 1.21304 1.02724 0.97580 0.98851 1.17346 0.88048 0.91319 0.89716 1.19524 1.12883 1.02868 1.14029 0.90596 1.25884 0.96444 0.97911 0.93936 1.69803 1.23174 1.30850 1.18437 0.86340 0.79001 0.82333 0.78862 1.19075 1.20341 1.18888 1.20472 1.11084 0.99911 0.98154 0.91229 0.91403 0.89319 0.81721 0.83568 0.75837 0.89862 0.89360 0.86306 0.90894 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.81 36.00 0.35 -1.10 16 2 C -0.15 -2.08 5.45 -104.28 -0.57 -2.65 16 3 C 0.14 1.77 10.85 -17.61 -0.19 1.58 16 4 N -0.52 -7.81 10.37 -13.69 -0.14 -7.95 16 5 C 0.30 4.53 8.40 -17.41 -0.15 4.38 16 6 F -0.12 -1.74 17.29 2.25 0.04 -1.70 16 7 C -0.20 -2.97 10.03 -39.17 -0.39 -3.36 16 8 C 0.25 3.80 4.56 -83.58 -0.38 3.42 16 9 N -0.71 -11.71 4.92 -8.31 -0.04 -11.75 16 10 C 0.21 4.33 5.22 -83.82 -0.44 3.89 16 11 C -0.28 -6.11 8.78 -39.08 -0.34 -6.46 16 12 C -0.08 -1.78 10.01 -39.69 -0.40 -2.18 16 13 C -0.18 -4.65 8.67 -38.84 -0.34 -4.99 16 14 C 0.14 3.54 5.55 -106.85 -0.59 2.95 16 15 C -0.46 -11.86 9.06 -37.74 -0.34 -12.20 16 16 H 0.08 1.86 7.87 -52.49 -0.41 1.45 16 17 C 0.08 1.84 5.24 -17.34 -0.09 1.75 16 18 N -0.80 -20.07 10.84 55.55 0.60 -19.47 16 19 Si 0.91 18.21 29.58 -169.99 -5.03 13.18 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 23 C -0.27 -6.24 9.64 -38.67 -0.37 -6.61 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 26 H 0.09 1.48 5.89 -51.93 -0.31 1.18 16 27 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 29 H 0.40 5.81 8.83 -40.82 -0.36 5.45 16 30 H 0.08 1.72 6.75 -52.49 -0.35 1.37 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 32 H 0.12 3.12 6.18 -52.48 -0.32 2.80 16 33 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 34 H 0.09 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -26.97 297.88 -7.75 -34.71 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.43 Total: 10.05 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -4.24 Total: -21.57 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.42 Total: -39.17 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.97 -7.75 -34.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212852998.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.861 kcal (2) G-P(sol) polarization free energy of solvation -26.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds