Wall clock time and date at job start Mon Mar 30 2020 01:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37849 * 120.44072 * 2 1 4 4 N 1.32028 * 120.87346 * 180.28616 * 3 2 1 5 5 C 1.32188 * 121.87559 * 359.71705 * 4 3 2 6 6 F 1.35102 * 119.60544 * 180.02562 * 5 4 3 7 7 C 1.38206 * 120.78083 * 0.02562 * 5 4 3 8 8 C 1.39379 * 119.04750 * 359.97438 * 7 5 4 9 9 N 1.39246 * 120.85269 * 179.97438 * 8 7 5 10 10 C 1.39754 * 119.99917 * 255.65848 * 9 8 7 11 11 C 1.39337 * 119.95250 * 5.94643 * 10 9 8 12 12 C 1.38479 * 120.41990 * 179.97438 * 11 10 9 13 13 C 1.37685 * 120.32695 * 0.04418 * 12 11 10 14 14 C 1.40747 * 119.89809 * 359.93025 * 13 12 11 15 15 C 1.41402 * 120.21211 * 180.31859 * 14 13 12 16 16 H 1.08002 * 120.00392 * 151.94645 * 15 14 13 17 17 C 1.39934 * 120.00126 * 331.95012 * 15 14 13 18 18 N 1.30834 * 119.99763 * 348.26304 * 17 15 14 19 19 Si 1.86799 * 120.00264 * 168.26299 * 17 15 14 20 20 H 1.48500 * 109.46970 * 59.99934 * 19 17 15 21 21 H 1.48504 * 109.47019 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47047 * 299.99962 * 19 17 15 23 23 C 1.38282 * 119.94850 * 185.91752 * 10 9 8 24 24 H 1.08997 * 109.47047 * 270.25556 * 1 2 3 25 25 H 1.09003 * 109.46985 * 30.24871 * 1 2 3 26 26 H 1.09000 * 109.47227 * 150.24653 * 1 2 3 27 27 H 1.07992 * 119.55930 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.47829 * 179.97438 * 7 5 4 29 29 H 0.96999 * 119.99688 * 75.66159 * 9 8 7 30 30 H 1.07998 * 119.79387 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.83611 * 180.02562 * 12 11 10 32 32 H 1.08005 * 120.04980 * 180.02562 * 13 12 11 33 33 H 0.96995 * 119.99850 * 180.02562 * 18 17 15 34 34 H 1.08003 * 120.16775 * 0.03216 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2054 1.1885 0.0000 4 7 3.5256 1.1984 -0.0057 5 6 4.2321 0.0812 -0.0060 6 9 5.5816 0.1449 -0.0114 7 6 3.6066 -1.1512 -0.0009 8 6 2.2138 -1.2031 0.0052 9 7 1.5448 -2.4244 0.0099 10 6 0.9411 -2.8949 -1.1594 11 6 1.1135 -2.2048 -2.3575 12 6 0.5201 -2.6627 -3.5220 13 6 -0.2479 -3.8054 -3.5081 14 6 -0.4305 -4.5134 -2.3055 15 6 -1.2124 -5.6914 -2.2850 16 1 -1.0106 -6.4609 -1.5545 17 6 -2.2477 -5.8602 -3.2112 18 7 -2.6444 -4.8490 -3.9404 19 14 -3.0633 -7.5294 -3.4065 20 1 -3.6682 -7.9390 -2.1136 21 1 -4.1230 -7.4442 -4.4434 22 1 -2.0475 -8.5316 -3.8172 23 6 0.1741 -4.0450 -1.1256 24 1 -0.3633 0.0046 1.0276 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3634 -0.8922 -0.5100 27 1 1.6654 2.1237 -0.0004 28 1 4.1887 -2.0610 -0.0016 29 1 1.4978 -2.9484 0.8248 30 1 1.7135 -1.3071 -2.3782 31 1 0.6603 -2.1207 -4.4455 32 1 -0.7082 -4.1587 -4.4190 33 1 -3.3622 -4.9659 -4.5821 34 1 0.0398 -4.5808 -0.1975 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212852998.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:25 Heat of formation + Delta-G solvation = -0.724472 kcal Electronic energy + Delta-G solvation = -19695.125787 eV Core-core repulsion = 16506.357344 eV Total energy + Delta-G solvation = -3188.768443 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.07899 -41.55455 -39.55162 -37.08648 -35.14033 -33.69973 -32.40122 -31.66655 -29.36018 -27.77790 -27.15164 -24.64200 -23.29142 -22.75326 -22.05400 -19.54914 -18.95208 -18.48792 -17.47741 -17.16596 -16.99041 -16.40973 -16.30504 -16.18573 -15.21082 -14.92376 -14.83445 -14.54700 -14.50082 -14.00982 -13.85863 -13.33877 -13.32551 -12.96321 -12.91221 -12.79690 -12.58945 -12.17814 -11.80717 -11.30081 -11.21434 -10.93724 -10.83720 -10.54081 -9.80726 -9.35080 -8.57933 -8.19992 -6.35235 -0.15081 -0.06451 1.01836 1.26254 1.41460 1.52193 1.57578 2.22325 2.28260 2.50799 2.64371 2.81297 3.60709 3.74764 3.78225 3.82667 4.17123 4.33121 4.47015 4.61460 4.68879 4.75478 4.80833 5.09546 5.12817 5.15144 5.19807 5.31107 5.37479 5.43845 5.57156 5.87842 5.96635 6.16008 6.26009 6.55511 6.55939 6.81212 6.86585 6.99973 7.12389 8.39834 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.037659 B = 0.004031 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.327361 B = 6944.291552 C = 7084.639227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.147 4.147 3 C 0.145 3.855 4 N -0.533 5.533 5 C 0.292 3.708 6 F -0.119 7.119 7 C -0.200 4.200 8 C 0.228 3.772 9 N -0.702 5.702 10 C 0.232 3.768 11 C -0.282 4.282 12 C -0.079 4.079 13 C -0.215 4.215 14 C 0.112 3.888 15 C -0.499 4.499 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.828 5.828 19 Si 0.981 3.019 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.262 1.262 23 C -0.288 4.288 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.202 0.798 28 H 0.155 0.845 29 H 0.415 0.585 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.286 0.714 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 7.127 6.967 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.151 4.151 3 C -0.012 4.012 4 N -0.247 5.247 5 C 0.139 3.861 6 F -0.098 7.098 7 C -0.224 4.224 8 C 0.125 3.875 9 N -0.334 5.334 10 C 0.135 3.865 11 C -0.305 4.305 12 C -0.098 4.098 13 C -0.236 4.236 14 C 0.109 3.891 15 C -0.529 4.529 16 H 0.093 0.907 17 C -0.179 4.179 18 N -0.454 5.454 19 Si 0.802 3.198 20 H -0.184 1.184 21 H -0.194 1.194 22 H -0.186 1.186 23 C -0.311 4.311 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.219 0.781 28 H 0.173 0.827 29 H 0.254 0.746 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.169 8.090 6.722 11.720 hybrid contribution -0.445 -1.724 -0.027 1.781 sum 4.723 6.366 6.696 10.376 Atomic orbital electron populations 1.20684 0.88550 1.03716 1.03353 1.21600 0.99256 0.93069 1.01158 1.22795 0.86629 0.98768 0.92981 1.67080 1.10413 1.30566 1.16683 1.17978 0.78481 0.89883 0.99745 1.91592 1.27690 1.97004 1.93552 1.22248 0.95485 0.98347 1.06283 1.17480 0.89298 0.86713 0.93974 1.41558 1.60540 1.20127 1.11130 1.17269 0.91615 0.92434 0.85225 1.20008 1.13404 1.04633 0.92448 1.20690 0.96300 0.95818 0.96949 1.21201 1.04798 0.99266 0.98291 1.17680 0.88799 0.91902 0.90710 1.19796 1.14192 1.03500 1.15394 0.90654 1.26704 0.96593 1.01477 0.93125 1.69877 1.23789 1.32771 1.19004 0.85269 0.78008 0.77440 0.79076 1.18425 1.19399 1.18640 1.20575 1.11750 1.00990 0.97786 0.89400 0.89226 0.92853 0.78121 0.82717 0.74645 0.88571 0.87675 0.88285 0.90362 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.53 9.81 71.23 0.70 -1.83 16 2 C -0.15 -3.71 5.45 -19.64 -0.11 -3.81 16 3 C 0.14 3.28 10.85 84.57 0.92 4.20 16 4 N -0.53 -14.51 10.37 -197.24 -2.05 -16.55 16 5 C 0.29 8.17 8.40 84.63 0.71 8.88 16 6 F -0.12 -3.33 17.29 44.97 0.78 -2.55 16 7 C -0.20 -5.44 10.03 22.54 0.23 -5.22 16 8 C 0.23 6.46 4.56 38.55 0.18 6.64 16 9 N -0.70 -21.94 4.92 -180.20 -0.89 -22.83 16 10 C 0.23 9.35 5.22 38.15 0.20 9.55 16 11 C -0.28 -11.89 8.78 22.59 0.20 -11.69 16 12 C -0.08 -3.61 10.01 22.20 0.22 -3.39 16 13 C -0.22 -11.19 8.67 22.75 0.20 -10.99 16 14 C 0.11 5.89 5.55 -21.31 -0.12 5.77 16 15 C -0.50 -26.32 9.06 23.46 0.21 -26.11 16 16 H 0.08 3.81 7.87 -2.91 -0.02 3.79 16 17 C 0.04 1.75 5.24 85.25 0.45 2.20 16 18 N -0.83 -42.84 10.84 21.82 0.24 -42.61 16 19 Si 0.98 37.64 29.58 68.60 2.03 39.67 16 20 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 21 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 23 C -0.29 -13.27 9.64 22.86 0.22 -13.05 16 24 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 25 H 0.09 1.74 8.10 -2.39 -0.02 1.72 16 26 H 0.05 1.69 5.89 -2.39 -0.01 1.68 16 27 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 29 H 0.41 11.27 8.83 -92.71 -0.82 10.45 16 30 H 0.10 3.79 6.75 -2.91 -0.02 3.77 16 31 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 32 H 0.10 5.46 6.18 -2.91 -0.02 5.44 16 33 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 34 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -58.82 297.88 4.64 -54.18 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.33 Total: 29.56 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 4.20 Total: -38.87 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.70 Total: -81.99 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -58.82 4.64 -54.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212852998.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.456 kcal (2) G-P(sol) polarization free energy of solvation -58.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds