Wall clock time and date at job start Mon Mar 30 2020 01:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38718 * 120.83816 * 2 1 4 4 F 1.35103 * 120.39434 * 0.24698 * 3 2 1 5 5 C 1.38487 * 119.20127 * 179.97438 * 3 2 1 6 6 N 1.31881 * 120.90212 * 359.96849 * 5 3 2 7 7 C 1.31755 * 121.83420 * 0.02849 * 6 5 3 8 8 C 1.39013 * 120.70072 * 359.97438 * 7 6 5 9 9 N 1.39623 * 120.48527 * 179.97438 * 8 7 6 10 10 C 1.38809 * 119.99642 * 256.68350 * 9 8 7 11 11 C 1.39601 * 119.84601 * 4.89109 * 10 9 8 12 12 C 1.36315 * 120.15445 * 179.75968 * 11 10 9 13 13 C 1.40902 * 119.84312 * 0.52058 * 12 11 10 14 14 C 1.41101 * 120.15402 * 179.71338 * 13 12 11 15 15 H 1.08001 * 120.00146 * 23.87959 * 14 13 12 16 16 C 1.39852 * 119.99655 * 203.87244 * 14 13 12 17 17 N 1.30912 * 120.00140 * 19.48177 * 16 14 13 18 18 Si 1.86800 * 119.99677 * 199.47833 * 16 14 13 19 19 H 1.48497 * 109.47352 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46873 * 120.00002 * 18 16 14 21 21 H 1.48497 * 109.47255 * 239.99963 * 18 16 14 22 22 C 1.40906 * 119.68887 * 359.73935 * 13 12 11 23 23 C 1.36311 * 119.84253 * 0.02562 * 22 13 12 24 24 H 1.09004 * 109.47135 * 90.00075 * 1 2 3 25 25 H 1.09001 * 109.47713 * 210.00155 * 1 2 3 26 26 H 1.09004 * 109.47350 * 330.00375 * 1 2 3 27 27 H 1.08004 * 119.54840 * 179.97438 * 5 3 2 28 28 H 1.08001 * 119.65133 * 180.02562 * 7 6 5 29 29 H 0.96997 * 119.99686 * 76.67438 * 9 8 7 30 30 H 1.07996 * 119.92434 * 0.03468 * 11 10 9 31 31 H 1.08006 * 120.07946 * 180.27908 * 12 11 10 32 32 H 0.96999 * 119.99356 * 180.02562 * 17 16 14 33 33 H 1.07996 * 120.07682 * 179.97438 * 22 13 12 34 34 H 1.08001 * 119.92227 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2180 1.1911 0.0000 4 9 1.5679 2.3753 0.0050 5 6 3.6023 1.1515 0.0005 6 7 4.2470 0.0010 0.0017 7 6 3.6103 -1.1525 0.0018 8 6 2.2208 -1.1961 0.0012 9 7 1.5507 -2.4210 0.0008 10 6 0.9751 -2.8967 -1.1693 11 6 1.1551 -2.1997 -2.3654 12 6 0.5968 -2.6639 -3.5191 13 6 -0.1725 -3.8442 -3.5004 14 6 -0.7585 -4.3272 -4.6897 15 1 -0.3378 -4.0576 -5.6472 16 6 -1.8838 -5.1553 -4.6284 17 7 -2.6189 -5.1817 -3.5456 18 14 -2.3379 -6.2236 -6.0920 19 1 -1.3536 -6.0122 -7.1836 20 1 -2.3258 -7.6518 -5.6850 21 1 -3.6949 -5.8568 -6.5706 22 6 -0.3545 -4.5395 -2.2885 23 6 0.2136 -4.0665 -1.1432 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 4.1616 2.0755 0.0001 28 1 4.1738 -2.0738 0.0031 29 1 1.4874 -2.9395 0.8181 30 1 1.7416 -1.2930 -2.3775 31 1 0.7405 -2.1260 -4.4446 32 1 -3.3992 -5.7564 -3.5031 33 1 -0.9433 -5.4446 -2.2669 34 1 0.0747 -4.5983 -0.2135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216192974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:37 Heat of formation + Delta-G solvation = 12.400263 kcal Electronic energy + Delta-G solvation = -19794.622618 eV Core-core repulsion = 16606.423306 eV Total energy + Delta-G solvation = -3188.199312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.93412 -40.28311 -37.95646 -35.54213 -33.50526 -32.69850 -30.30580 -29.41285 -28.58654 -27.44029 -24.71682 -22.97796 -22.22583 -21.03493 -20.42093 -17.55319 -17.45195 -17.26580 -16.38480 -16.28537 -15.69936 -15.54598 -14.96760 -13.98754 -13.84502 -13.47689 -13.11653 -12.89892 -12.75697 -12.69929 -12.58764 -12.13371 -11.94871 -11.71413 -11.56737 -11.14740 -10.97801 -10.63455 -10.04720 -9.76914 -9.47692 -9.37663 -9.21218 -8.92723 -8.64056 -7.63315 -6.82670 -6.62400 -4.18394 0.95119 1.12591 2.78001 2.98303 3.09105 3.14251 3.21620 3.62297 3.83237 3.96219 4.21189 4.52331 4.62051 4.73289 4.77969 5.10962 5.54382 5.65658 5.72295 5.78991 5.88425 6.12669 6.13161 6.19150 6.31239 6.55570 6.78525 6.91175 7.05672 7.18989 7.42704 7.52772 7.64953 7.84864 8.01855 8.18502 8.32372 8.42822 8.63329 8.92234 8.99498 10.21964 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.004173 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.233348 B = 6708.298158 C = 6836.584270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.085 4.085 3 C 0.049 3.951 4 F -0.133 7.133 5 C 0.058 3.942 6 N -0.456 5.456 7 C 0.079 3.921 8 C 0.159 3.841 9 N -0.706 5.706 10 C 0.068 3.932 11 C -0.138 4.138 12 C -0.194 4.194 13 C 0.085 3.915 14 C -0.464 4.464 15 H 0.075 0.925 16 C 0.076 3.924 17 N -0.799 5.799 18 Si 0.903 3.097 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.131 4.131 23 C -0.145 4.145 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.163 0.837 28 H 0.162 0.838 29 H 0.399 0.601 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.278 0.722 33 H 0.120 0.880 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.659 6.363 7.388 11.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C 0.027 3.973 4 F -0.111 7.111 5 C -0.101 4.101 6 N -0.164 5.164 7 C -0.081 4.081 8 C 0.061 3.939 9 N -0.339 5.339 10 C -0.025 4.025 11 C -0.160 4.160 12 C -0.215 4.215 13 C 0.082 3.918 14 C -0.494 4.494 15 H 0.093 0.907 16 C -0.140 4.140 17 N -0.426 5.426 18 Si 0.728 3.272 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.151 4.151 23 C -0.167 4.167 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.180 0.820 28 H 0.179 0.821 29 H 0.236 0.764 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.343 6.394 7.368 11.636 hybrid contribution -1.408 -0.400 -0.366 1.508 sum 4.935 5.993 7.002 10.454 Atomic orbital electron populations 1.20646 0.88892 1.03073 1.03896 1.21056 0.98513 0.91583 0.98386 1.18663 0.91519 0.81099 1.06013 1.91484 1.81591 1.44069 1.93976 1.22765 0.89512 0.97638 1.00144 1.67671 1.39570 0.97712 1.11491 1.23358 0.91558 0.96247 0.96899 1.18194 0.90987 0.86561 0.98121 1.41140 1.63158 1.18914 1.10713 1.17206 1.02925 0.97597 0.84817 1.19843 1.04202 0.99586 0.92343 1.20541 1.06586 0.98286 0.96052 1.17540 0.90999 0.89938 0.93280 1.19456 1.10044 1.25919 0.93958 0.90650 1.25836 0.95290 0.95872 0.97027 1.69867 1.12405 1.31937 1.28370 0.86348 0.78850 0.80034 0.81996 1.18484 1.19797 1.20138 1.20897 1.01583 1.00718 0.91932 1.20011 1.01823 0.96823 0.98036 0.89737 0.90083 0.91578 0.81983 0.82068 0.76424 0.89935 0.88993 0.91123 0.86219 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.35 36.00 0.34 -1.26 16 2 C -0.08 -1.27 5.48 -104.05 -0.57 -1.84 16 3 C 0.05 0.69 7.28 -39.31 -0.29 0.40 16 4 F -0.13 -1.81 16.61 2.25 0.04 -1.78 16 5 C 0.06 0.75 11.17 -17.44 -0.19 0.55 16 6 N -0.46 -6.49 10.35 -13.00 -0.13 -6.62 16 7 C 0.08 1.13 11.13 -17.30 -0.19 0.93 16 8 C 0.16 2.41 4.50 -83.63 -0.38 2.04 16 9 N -0.71 -11.28 4.55 -8.21 -0.04 -11.32 16 10 C 0.07 1.38 6.25 -83.68 -0.52 0.85 16 11 C -0.14 -3.00 9.13 -39.77 -0.36 -3.36 16 12 C -0.19 -4.67 9.74 -39.27 -0.38 -5.06 16 13 C 0.09 2.21 5.58 -106.79 -0.60 1.62 16 14 C -0.46 -12.15 9.02 -37.89 -0.34 -12.49 16 15 H 0.08 1.92 7.92 -52.49 -0.42 1.51 16 16 C 0.08 1.89 5.10 -17.34 -0.09 1.80 16 17 N -0.80 -20.32 11.00 55.54 0.61 -19.71 16 18 Si 0.90 18.53 29.60 -169.99 -5.03 13.50 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 C -0.13 -3.25 8.64 -39.27 -0.34 -3.59 16 23 C -0.15 -3.14 9.82 -39.76 -0.39 -3.53 16 24 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 25 H 0.08 1.22 7.55 -51.93 -0.39 0.83 16 26 H 0.07 0.85 7.73 -51.93 -0.40 0.45 16 27 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 28 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.40 5.50 8.82 -40.82 -0.36 5.14 16 30 H 0.08 1.72 6.73 -52.49 -0.35 1.36 16 31 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 32 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 33 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 299.21 15.07 4.51 4.51 Total: -1.00 -26.80 299.21 -7.85 -34.65 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -3.49 Total: 9.70 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -4.31 Total: -22.93 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.44 Total: -37.65 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.80 -7.85 -34.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216192974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.054 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds