Wall clock time and date at job start Mon Mar 30 2020 01:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38718 * 120.83816 * 2 1 4 4 F 1.35103 * 120.39434 * 0.24698 * 3 2 1 5 5 C 1.38487 * 119.20127 * 179.97438 * 3 2 1 6 6 N 1.31881 * 120.90212 * 359.96849 * 5 3 2 7 7 C 1.31755 * 121.83420 * 0.02849 * 6 5 3 8 8 C 1.39013 * 120.70072 * 359.97438 * 7 6 5 9 9 N 1.39623 * 120.48527 * 179.97438 * 8 7 6 10 10 C 1.38809 * 119.99642 * 256.68350 * 9 8 7 11 11 C 1.39601 * 119.84601 * 4.89109 * 10 9 8 12 12 C 1.36315 * 120.15445 * 179.75968 * 11 10 9 13 13 C 1.40902 * 119.84312 * 0.52058 * 12 11 10 14 14 C 1.41101 * 120.15402 * 179.71338 * 13 12 11 15 15 H 1.08001 * 120.00146 * 23.87959 * 14 13 12 16 16 C 1.39852 * 119.99655 * 203.87244 * 14 13 12 17 17 N 1.30912 * 120.00140 * 19.48177 * 16 14 13 18 18 Si 1.86800 * 119.99677 * 199.47833 * 16 14 13 19 19 H 1.48497 * 109.47352 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46873 * 120.00002 * 18 16 14 21 21 H 1.48497 * 109.47255 * 239.99963 * 18 16 14 22 22 C 1.40906 * 119.68887 * 359.73935 * 13 12 11 23 23 C 1.36311 * 119.84253 * 0.02562 * 22 13 12 24 24 H 1.09004 * 109.47135 * 90.00075 * 1 2 3 25 25 H 1.09001 * 109.47713 * 210.00155 * 1 2 3 26 26 H 1.09004 * 109.47350 * 330.00375 * 1 2 3 27 27 H 1.08004 * 119.54840 * 179.97438 * 5 3 2 28 28 H 1.08001 * 119.65133 * 180.02562 * 7 6 5 29 29 H 0.96997 * 119.99686 * 76.67438 * 9 8 7 30 30 H 1.07996 * 119.92434 * 0.03468 * 11 10 9 31 31 H 1.08006 * 120.07946 * 180.27908 * 12 11 10 32 32 H 0.96999 * 119.99356 * 180.02562 * 17 16 14 33 33 H 1.07996 * 120.07682 * 179.97438 * 22 13 12 34 34 H 1.08001 * 119.92227 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2180 1.1911 0.0000 4 9 1.5679 2.3753 0.0050 5 6 3.6023 1.1515 0.0005 6 7 4.2470 0.0010 0.0017 7 6 3.6103 -1.1525 0.0018 8 6 2.2208 -1.1961 0.0012 9 7 1.5507 -2.4210 0.0008 10 6 0.9751 -2.8967 -1.1693 11 6 1.1551 -2.1997 -2.3654 12 6 0.5968 -2.6639 -3.5191 13 6 -0.1725 -3.8442 -3.5004 14 6 -0.7585 -4.3272 -4.6897 15 1 -0.3378 -4.0576 -5.6472 16 6 -1.8838 -5.1553 -4.6284 17 7 -2.6189 -5.1817 -3.5456 18 14 -2.3379 -6.2236 -6.0920 19 1 -1.3536 -6.0122 -7.1836 20 1 -2.3258 -7.6518 -5.6850 21 1 -3.6949 -5.8568 -6.5706 22 6 -0.3545 -4.5395 -2.2885 23 6 0.2136 -4.0665 -1.1432 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 4.1616 2.0755 0.0001 28 1 4.1738 -2.0738 0.0031 29 1 1.4874 -2.9395 0.8181 30 1 1.7416 -1.2930 -2.3775 31 1 0.7405 -2.1260 -4.4446 32 1 -3.3992 -5.7564 -3.5031 33 1 -0.9433 -5.4446 -2.2669 34 1 0.0747 -4.5983 -0.2135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216192974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:37 Heat of formation + Delta-G solvation = -0.953347 kcal Electronic energy + Delta-G solvation = -19795.201674 eV Core-core repulsion = 16606.423306 eV Total energy + Delta-G solvation = -3188.778368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.02011 -41.48045 -39.60464 -37.04209 -35.12405 -34.05364 -31.81577 -31.11089 -30.07912 -28.71869 -26.42261 -24.29670 -23.40125 -22.76631 -22.07862 -19.21338 -18.71766 -18.58698 -17.90138 -17.35193 -17.11411 -16.84758 -16.47362 -15.70941 -14.94540 -14.80154 -14.71360 -14.33336 -14.21032 -13.94700 -13.89858 -13.71789 -13.66276 -13.32640 -12.83757 -12.77690 -12.69815 -12.32931 -11.67320 -11.40079 -11.26814 -10.86215 -10.54014 -10.33672 -9.88998 -9.44962 -8.63239 -8.33415 -6.07583 -0.16100 -0.02793 1.04989 1.14453 1.40918 1.53352 1.56044 2.25749 2.44371 2.62076 2.78866 3.07827 3.46992 3.61267 3.67680 3.81121 3.95802 4.37598 4.41804 4.47313 4.57255 4.59917 4.75096 4.97910 5.00793 5.11132 5.15427 5.24292 5.34130 5.49579 5.69220 5.73899 5.88409 6.14056 6.35820 6.58551 6.72906 6.82736 7.02810 7.04005 7.17335 8.41956 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.004173 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.233348 B = 6708.298158 C = 6836.584270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.092 4.092 3 C 0.045 3.955 4 F -0.131 7.131 5 C 0.071 3.929 6 N -0.465 5.465 7 C 0.084 3.916 8 C 0.139 3.861 9 N -0.693 5.693 10 C 0.102 3.898 11 C -0.144 4.144 12 C -0.206 4.206 13 C 0.049 3.951 14 C -0.504 4.504 15 H 0.067 0.933 16 C 0.038 3.962 17 N -0.832 5.832 18 Si 0.974 3.026 19 H -0.262 1.262 20 H -0.264 1.264 21 H -0.268 1.268 22 C -0.147 4.147 23 C -0.151 4.151 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.195 0.805 28 H 0.176 0.824 29 H 0.413 0.587 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.285 0.715 33 H 0.103 0.897 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 7.059 8.472 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.103 4.103 3 C 0.023 3.977 4 F -0.109 7.109 5 C -0.087 4.087 6 N -0.174 5.174 7 C -0.075 4.075 8 C 0.042 3.958 9 N -0.326 5.326 10 C 0.006 3.994 11 C -0.166 4.166 12 C -0.226 4.226 13 C 0.047 3.953 14 C -0.535 4.535 15 H 0.085 0.915 16 C -0.176 4.176 17 N -0.459 5.459 18 Si 0.795 3.205 19 H -0.186 1.186 20 H -0.189 1.189 21 H -0.193 1.193 22 C -0.167 4.167 23 C -0.172 4.172 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.212 0.788 28 H 0.193 0.807 29 H 0.252 0.748 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.444 7.110 8.495 13.346 hybrid contribution -1.600 -0.420 -0.526 1.736 sum 5.844 6.691 7.968 11.934 Atomic orbital electron populations 1.20598 0.89072 1.03763 1.02802 1.21136 0.98565 0.92120 0.98435 1.18712 0.91945 0.80816 1.06260 1.91493 1.81637 1.43829 1.93974 1.23285 0.89288 0.98454 0.97721 1.67780 1.39604 0.97989 1.11978 1.23536 0.91116 0.97032 0.95785 1.18253 0.91387 0.86002 1.00127 1.40963 1.62337 1.19465 1.09872 1.17181 1.00402 0.96091 0.85755 1.19915 1.04326 1.00121 0.92194 1.20666 1.06877 0.98075 0.97011 1.17821 0.92453 0.91116 0.93958 1.19637 1.11570 1.28413 0.93870 0.91517 1.26570 0.94649 0.96480 0.99863 1.69907 1.13003 1.32817 1.30186 0.85289 0.78517 0.78298 0.78372 1.18608 1.18897 1.19341 1.20854 1.02441 1.00581 0.92833 1.20221 1.01437 0.97419 0.98170 0.91649 0.90567 0.89854 0.78798 0.80677 0.74819 0.88794 0.89215 0.90468 0.87864 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.97 9.35 71.23 0.67 -2.30 16 2 C -0.09 -2.56 5.48 -19.50 -0.11 -2.67 16 3 C 0.04 1.13 7.28 22.44 0.16 1.29 16 4 F -0.13 -3.25 16.61 44.97 0.75 -2.50 16 5 C 0.07 1.59 11.17 84.74 0.95 2.54 16 6 N -0.47 -11.76 10.35 -195.04 -2.02 -13.78 16 7 C 0.08 2.16 11.13 84.89 0.94 3.11 16 8 C 0.14 3.89 4.50 38.34 0.17 4.06 16 9 N -0.69 -20.56 4.55 -179.90 -0.82 -21.37 16 10 C 0.10 3.96 6.25 38.70 0.24 4.20 16 11 C -0.14 -6.17 9.13 22.15 0.20 -5.97 16 12 C -0.21 -10.14 9.74 22.47 0.22 -9.92 16 13 C 0.05 2.64 5.58 -21.27 -0.12 2.53 16 14 C -0.50 -27.56 9.02 23.36 0.21 -27.35 16 15 H 0.07 3.59 7.92 -2.91 -0.02 3.56 16 16 C 0.04 1.92 5.10 85.22 0.43 2.36 16 17 N -0.83 -43.45 11.00 21.81 0.24 -43.21 16 18 Si 0.97 38.77 29.60 68.60 2.03 40.80 16 19 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 20 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 22 C -0.15 -7.45 8.64 22.47 0.19 -7.25 16 23 C -0.15 -6.40 9.82 22.15 0.22 -6.19 16 24 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.08 2.18 7.55 -2.39 -0.02 2.17 16 26 H 0.08 2.00 7.73 -2.38 -0.02 1.99 16 27 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.18 3.94 8.06 -2.91 -0.02 3.92 16 29 H 0.41 10.21 8.82 -92.71 -0.82 9.39 16 30 H 0.09 3.79 6.73 -2.91 -0.02 3.77 16 31 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.28 13.45 8.30 -92.71 -0.77 12.68 16 33 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 34 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -58.48 299.21 4.89 -53.58 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.32 Total: 28.03 kcal Atomic # 6 Polarization: -45.94 SS G_CDS: 4.39 Total: -41.56 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -2.60 Total: -78.36 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.75 Total: -2.50 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -58.48 4.89 -53.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216192974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.631 kcal (2) G-P(sol) polarization free energy of solvation -58.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds