Wall clock time and date at job start Mon Mar 30 2020 01:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38717 * 120.83434 * 2 1 4 4 F 1.35093 * 120.40214 * 0.04908 * 3 2 1 5 5 C 1.38499 * 119.19970 * 180.23435 * 3 2 1 6 6 N 1.31888 * 120.89993 * 359.81124 * 5 3 2 7 7 C 1.31763 * 121.83311 * 359.97438 * 6 5 3 8 8 C 1.39015 * 120.70192 * 359.97178 * 7 6 5 9 9 N 1.39606 * 120.48184 * 179.97438 * 8 7 6 10 10 C 1.38680 * 120.00186 * 354.23412 * 9 8 7 11 11 C 1.38810 * 120.29698 * 317.45394 * 10 9 8 12 12 C 1.38115 * 120.02331 * 179.97438 * 11 10 9 13 13 C 1.38931 * 120.63236 * 0.02562 * 12 11 10 14 14 C 1.36421 * 120.60950 * 0.02562 * 13 12 11 15 15 C 1.40746 * 119.95307 * 0.30041 * 14 13 12 16 16 C 1.41010 * 120.31332 * 179.70189 * 15 14 13 17 17 H 1.07997 * 119.99610 * 207.09101 * 16 15 14 18 18 C 1.39913 * 119.99979 * 27.08455 * 16 15 14 19 19 N 1.30888 * 119.99756 * 11.77696 * 18 16 15 20 20 Si 1.86800 * 119.99775 * 191.77596 * 18 16 15 21 21 H 1.48491 * 109.47090 * 60.00119 * 20 18 16 22 22 H 1.48499 * 109.46789 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47016 * 299.99897 * 20 18 16 24 24 H 1.08996 * 109.47200 * 270.19708 * 1 2 3 25 25 H 1.08999 * 109.47015 * 30.20017 * 1 2 3 26 26 H 1.09006 * 109.46763 * 150.19813 * 1 2 3 27 27 H 1.07996 * 119.54740 * 179.79277 * 5 3 2 28 28 H 1.07995 * 119.65102 * 179.97438 * 7 6 5 29 29 H 0.97003 * 119.99662 * 174.23175 * 9 8 7 30 30 H 1.07997 * 119.98830 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.68922 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.69382 * 180.02562 * 13 12 11 33 33 H 1.08004 * 120.02641 * 180.02562 * 14 13 12 34 34 H 0.97005 * 119.99784 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2180 1.1911 0.0000 4 9 1.5680 2.3753 0.0010 5 6 3.6024 1.1516 -0.0049 6 7 4.2472 0.0011 -0.0059 7 6 3.6104 -1.1525 -0.0017 8 6 2.2209 -1.1961 0.0045 9 7 1.5509 -2.4209 0.0084 10 6 2.2659 -3.6028 -0.1146 11 6 3.3040 -3.7012 -1.0308 12 6 4.0127 -4.8808 -1.1482 13 6 3.6973 -5.9779 -0.3561 14 6 2.6814 -5.9101 0.5518 15 6 1.9383 -4.7225 0.6875 16 6 0.8826 -4.6461 1.6192 17 1 0.0611 -3.9658 1.4496 18 6 0.8993 -5.4516 2.7630 19 7 1.9876 -6.1010 3.0902 20 14 -0.6315 -5.6001 3.8232 21 1 -1.7444 -6.1537 3.0108 22 1 -0.3552 -6.5055 4.9674 23 1 -1.0115 -4.2587 4.3345 24 1 -0.3633 0.0035 1.0276 25 1 -0.3633 0.8882 -0.5169 26 1 -0.3633 -0.8918 -0.5108 27 1 4.1616 2.0755 -0.0084 28 1 4.1738 -2.0738 -0.0031 29 1 0.5853 -2.4452 0.0971 30 1 3.5583 -2.8547 -1.6514 31 1 4.8197 -4.9513 -1.8624 32 1 4.2617 -6.8928 -0.4603 33 1 2.4446 -6.7685 1.1630 34 1 1.9993 -6.6592 3.8835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216195119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:39 Heat of formation + Delta-G solvation = 8.722229 kcal Electronic energy + Delta-G solvation = -20113.655060 eV Core-core repulsion = 16925.296257 eV Total energy + Delta-G solvation = -3188.358803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.73331 -40.07136 -38.01657 -35.28895 -33.87046 -32.92048 -30.23508 -29.24951 -28.18629 -27.32980 -25.38380 -22.75524 -22.23028 -20.91175 -20.36393 -17.76150 -17.57129 -17.05657 -15.95136 -15.76440 -15.62485 -15.25754 -15.02420 -14.33015 -13.90453 -13.47716 -13.27183 -12.95415 -12.75824 -12.59450 -12.44072 -12.39347 -11.90499 -11.57000 -11.48059 -11.22600 -11.02947 -10.76289 -10.49813 -9.85337 -9.77229 -9.39378 -9.30714 -8.83254 -8.04977 -7.59598 -6.92320 -6.68738 -4.51787 1.36354 1.58901 2.61694 2.79442 2.95945 2.97283 3.07138 3.78213 3.87119 4.10588 4.47812 4.48943 4.93530 4.97095 5.04601 5.36299 5.44784 5.66138 5.68340 5.85690 6.00416 6.04118 6.22828 6.23713 6.39335 6.45544 6.78823 6.89337 6.99112 7.06779 7.21235 7.48412 7.54860 7.89168 7.89634 8.10373 8.20771 8.37895 8.45026 8.65281 8.76310 10.02112 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.006399 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.089022 B = 4374.795132 C = 5520.972402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.179 4.179 3 C 0.090 3.910 4 F -0.137 7.137 5 C -0.013 4.013 6 N -0.424 5.424 7 C 0.022 3.978 8 C 0.206 3.794 9 N -0.631 5.631 10 C 0.013 3.987 11 C -0.114 4.114 12 C -0.218 4.218 13 C -0.112 4.112 14 C -0.143 4.143 15 C 0.105 3.895 16 C -0.457 4.457 17 H 0.073 0.927 18 C 0.076 3.924 19 N -0.792 5.792 20 Si 0.911 3.089 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.265 1.265 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.154 0.846 28 H 0.173 0.827 29 H 0.403 0.597 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 6.199 -3.176 7.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.193 4.193 3 C 0.068 3.932 4 F -0.116 7.116 5 C -0.172 4.172 6 N -0.131 5.131 7 C -0.143 4.143 8 C 0.095 3.905 9 N -0.247 5.247 10 C -0.082 4.082 11 C -0.134 4.134 12 C -0.238 4.238 13 C -0.131 4.131 14 C -0.163 4.163 15 C 0.101 3.899 16 C -0.486 4.486 17 H 0.092 0.908 18 C -0.143 4.143 19 N -0.417 5.417 20 Si 0.735 3.265 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.190 1.190 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.172 0.828 28 H 0.190 0.810 29 H 0.241 0.759 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.144 0.856 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.260 5.930 -2.992 6.761 hybrid contribution -2.002 0.126 0.697 2.124 sum -3.262 6.056 -2.295 7.252 Atomic orbital electron populations 1.20481 0.89940 1.02863 1.02629 1.19654 0.97055 0.90701 1.11858 1.18333 0.91352 0.80331 1.03143 1.91437 1.81811 1.44469 1.93885 1.22354 0.89293 0.97345 1.08190 1.67549 1.39457 0.97530 1.08591 1.22965 0.90185 0.96832 1.04299 1.18638 0.92825 0.85892 0.93194 1.41567 1.08509 1.01058 1.73556 1.17595 1.00421 0.85980 1.04171 1.20545 0.98032 0.97387 0.97449 1.20261 1.04043 0.94467 1.04986 1.20514 0.98285 0.97041 0.97249 1.21067 0.97869 0.98114 0.99234 1.17501 0.92949 0.89882 0.89596 1.19250 1.05763 1.19775 1.03821 0.90844 1.25859 0.96955 0.93502 0.97940 1.69788 1.26588 1.22113 1.23239 0.86312 0.81724 0.79285 0.79172 1.18763 1.20131 1.19010 0.90967 0.91192 0.91367 0.82824 0.80981 0.75932 0.88385 0.88842 0.89078 0.85626 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.44 36.01 0.34 -1.05 16 2 C -0.18 -2.95 5.94 -104.05 -0.62 -3.57 16 3 C 0.09 1.45 7.28 -39.31 -0.29 1.16 16 4 F -0.14 -2.05 16.61 2.25 0.04 -2.01 16 5 C -0.01 -0.21 11.17 -17.43 -0.19 -0.40 16 6 N -0.42 -7.73 10.35 -13.00 -0.13 -7.87 16 7 C 0.02 0.42 9.25 -17.29 -0.16 0.26 16 8 C 0.21 3.80 6.45 -83.64 -0.54 3.26 16 9 N -0.63 -12.17 4.93 -7.95 -0.04 -12.20 16 10 C 0.01 0.28 5.91 -83.28 -0.49 -0.21 16 11 C -0.11 -2.36 7.36 -39.42 -0.29 -2.65 16 12 C -0.22 -4.48 10.03 -39.37 -0.40 -4.87 16 13 C -0.11 -2.42 9.96 -39.98 -0.40 -2.82 16 14 C -0.14 -3.41 8.62 -39.29 -0.34 -3.74 16 15 C 0.10 2.52 5.58 -106.63 -0.60 1.92 16 16 C -0.46 -10.93 8.65 -37.91 -0.33 -11.26 16 17 H 0.07 1.65 6.96 -52.49 -0.37 1.29 16 18 C 0.08 1.76 5.24 -17.33 -0.09 1.67 16 19 N -0.79 -19.19 10.78 55.55 0.60 -18.59 16 20 Si 0.91 17.58 29.58 -169.99 -5.03 12.55 16 21 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 22 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.85 7.73 -51.93 -0.40 0.45 16 26 H 0.07 0.87 6.76 -51.93 -0.35 0.52 16 27 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 28 H 0.17 3.46 5.28 -52.49 -0.28 3.18 16 29 H 0.40 7.21 6.05 -40.82 -0.25 6.96 16 30 H 0.10 1.89 6.64 -52.49 -0.35 1.54 16 31 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 33 H 0.13 3.10 6.12 -52.48 -0.32 2.78 16 34 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 290.60 15.07 4.38 4.38 Total: -1.00 -25.11 290.60 -7.71 -32.82 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -3.14 Total: 13.23 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -4.39 Total: -22.30 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.43 Total: -38.67 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -25.11 -7.71 -32.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216195119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.541 kcal (2) G-P(sol) polarization free energy of solvation -25.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds