Wall clock time and date at job start Mon Mar 30 2020 01:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38717 * 120.83434 * 2 1 4 4 F 1.35093 * 120.40214 * 0.04908 * 3 2 1 5 5 C 1.38499 * 119.19970 * 180.23435 * 3 2 1 6 6 N 1.31888 * 120.89993 * 359.81124 * 5 3 2 7 7 C 1.31763 * 121.83311 * 359.97438 * 6 5 3 8 8 C 1.39015 * 120.70192 * 359.97178 * 7 6 5 9 9 N 1.39606 * 120.48184 * 179.97438 * 8 7 6 10 10 C 1.38680 * 120.00186 * 354.23412 * 9 8 7 11 11 C 1.38810 * 120.29698 * 317.45394 * 10 9 8 12 12 C 1.38115 * 120.02331 * 179.97438 * 11 10 9 13 13 C 1.38931 * 120.63236 * 0.02562 * 12 11 10 14 14 C 1.36421 * 120.60950 * 0.02562 * 13 12 11 15 15 C 1.40746 * 119.95307 * 0.30041 * 14 13 12 16 16 C 1.41010 * 120.31332 * 179.70189 * 15 14 13 17 17 H 1.07997 * 119.99610 * 207.09101 * 16 15 14 18 18 C 1.39913 * 119.99979 * 27.08455 * 16 15 14 19 19 N 1.30888 * 119.99756 * 11.77696 * 18 16 15 20 20 Si 1.86800 * 119.99775 * 191.77596 * 18 16 15 21 21 H 1.48491 * 109.47090 * 60.00119 * 20 18 16 22 22 H 1.48499 * 109.46789 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47016 * 299.99897 * 20 18 16 24 24 H 1.08996 * 109.47200 * 270.19708 * 1 2 3 25 25 H 1.08999 * 109.47015 * 30.20017 * 1 2 3 26 26 H 1.09006 * 109.46763 * 150.19813 * 1 2 3 27 27 H 1.07996 * 119.54740 * 179.79277 * 5 3 2 28 28 H 1.07995 * 119.65102 * 179.97438 * 7 6 5 29 29 H 0.97003 * 119.99662 * 174.23175 * 9 8 7 30 30 H 1.07997 * 119.98830 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.68922 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.69382 * 180.02562 * 13 12 11 33 33 H 1.08004 * 120.02641 * 180.02562 * 14 13 12 34 34 H 0.97005 * 119.99784 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2180 1.1911 0.0000 4 9 1.5680 2.3753 0.0010 5 6 3.6024 1.1516 -0.0049 6 7 4.2472 0.0011 -0.0059 7 6 3.6104 -1.1525 -0.0017 8 6 2.2209 -1.1961 0.0045 9 7 1.5509 -2.4209 0.0084 10 6 2.2659 -3.6028 -0.1146 11 6 3.3040 -3.7012 -1.0308 12 6 4.0127 -4.8808 -1.1482 13 6 3.6973 -5.9779 -0.3561 14 6 2.6814 -5.9101 0.5518 15 6 1.9383 -4.7225 0.6875 16 6 0.8826 -4.6461 1.6192 17 1 0.0611 -3.9658 1.4496 18 6 0.8993 -5.4516 2.7630 19 7 1.9876 -6.1010 3.0902 20 14 -0.6315 -5.6001 3.8232 21 1 -1.7444 -6.1537 3.0108 22 1 -0.3552 -6.5055 4.9674 23 1 -1.0115 -4.2587 4.3345 24 1 -0.3633 0.0035 1.0276 25 1 -0.3633 0.8882 -0.5169 26 1 -0.3633 -0.8918 -0.5108 27 1 4.1616 2.0755 -0.0084 28 1 4.1738 -2.0738 -0.0031 29 1 0.5853 -2.4452 0.0971 30 1 3.5583 -2.8547 -1.6514 31 1 4.8197 -4.9513 -1.8624 32 1 4.2617 -6.8928 -0.4603 33 1 2.4446 -6.7685 1.1630 34 1 1.9993 -6.6592 3.8835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216195119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:39 Heat of formation + Delta-G solvation = -2.890249 kcal Electronic energy + Delta-G solvation = -20114.158615 eV Core-core repulsion = 16925.296257 eV Total energy + Delta-G solvation = -3188.862358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.97445 -41.49327 -39.62110 -36.78410 -35.56844 -34.27874 -31.87203 -30.78969 -29.68824 -28.63632 -27.10293 -24.19232 -23.65408 -22.50863 -21.96159 -19.32899 -19.07549 -18.53941 -17.35000 -17.26340 -16.88950 -16.67808 -16.59495 -15.91460 -15.42423 -14.80744 -14.69640 -14.52894 -14.21832 -13.92415 -13.81637 -13.62471 -13.53326 -13.15696 -12.81927 -12.79491 -12.58238 -12.31209 -12.05738 -11.54755 -11.42135 -11.09117 -10.68533 -10.14393 -9.61304 -9.33219 -8.62612 -8.25014 -6.29032 -0.00271 0.21093 0.95675 1.10912 1.38205 1.47734 1.51711 2.18396 2.41675 2.70084 2.78214 3.16279 3.63700 3.68291 3.70529 3.74176 4.09538 4.37610 4.40585 4.58122 4.59543 4.63581 4.79661 4.82386 5.05142 5.07561 5.11009 5.22091 5.35697 5.47123 5.66531 5.81433 5.88486 6.16772 6.21937 6.41374 6.66989 6.76424 6.90487 6.99950 7.06030 8.33494 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.006399 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.089022 B = 4374.795132 C = 5520.972402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.170 4.170 3 C 0.091 3.909 4 F -0.126 7.126 5 C -0.003 4.003 6 N -0.439 5.439 7 C 0.005 3.995 8 C 0.189 3.811 9 N -0.635 5.635 10 C 0.020 3.980 11 C -0.118 4.118 12 C -0.214 4.214 13 C -0.119 4.119 14 C -0.167 4.167 15 C 0.073 3.927 16 C -0.483 4.483 17 H 0.079 0.921 18 C 0.035 3.965 19 N -0.828 5.828 20 Si 0.977 3.023 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.263 1.263 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.186 0.814 28 H 0.157 0.843 29 H 0.408 0.592 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 8.038 -3.623 9.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.183 4.183 3 C 0.069 3.931 4 F -0.105 7.105 5 C -0.162 4.162 6 N -0.146 5.146 7 C -0.158 4.158 8 C 0.080 3.920 9 N -0.254 5.254 10 C -0.075 4.075 11 C -0.138 4.138 12 C -0.233 4.233 13 C -0.138 4.138 14 C -0.188 4.188 15 C 0.069 3.931 16 C -0.513 4.513 17 H 0.097 0.903 18 C -0.180 4.180 19 N -0.454 5.454 20 Si 0.799 3.201 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.188 1.188 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.203 0.797 28 H 0.174 0.826 29 H 0.246 0.754 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.886 7.782 -3.455 8.720 hybrid contribution -1.709 -0.239 0.732 1.874 sum -3.594 7.543 -2.723 8.788 Atomic orbital electron populations 1.20593 0.87840 1.04081 1.03527 1.19991 0.98662 0.90079 1.09618 1.18328 0.91414 0.80550 1.02832 1.91470 1.81591 1.43725 1.93721 1.22902 0.89781 0.97727 1.05833 1.67560 1.39872 0.97855 1.09358 1.22775 0.90531 0.96830 1.05704 1.18689 0.92739 0.86164 0.94377 1.41425 1.08585 1.00642 1.74710 1.17698 1.00268 0.86332 1.03172 1.20747 0.97792 0.97971 0.97325 1.20617 1.04190 0.93847 1.04671 1.20752 0.97863 0.98353 0.96797 1.21053 0.99419 0.97927 1.00366 1.17828 0.93829 0.90825 0.90645 1.19498 1.06338 1.20928 1.04560 0.90289 1.26645 0.99492 0.92934 0.98910 1.69868 1.28345 1.23197 1.24029 0.85309 0.78163 0.79167 0.77483 1.18207 1.19747 1.18767 0.90116 0.89392 0.90766 0.79690 0.82593 0.75383 0.86981 0.86065 0.87069 0.87400 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.54 9.44 71.24 0.67 -1.86 16 2 C -0.17 -5.24 5.94 -19.49 -0.12 -5.36 16 3 C 0.09 2.65 7.28 22.45 0.16 2.81 16 4 F -0.13 -3.33 16.61 44.97 0.75 -2.58 16 5 C 0.00 -0.07 11.17 84.75 0.95 0.87 16 6 N -0.44 -15.35 10.35 -195.03 -2.02 -17.37 16 7 C 0.00 0.17 9.25 84.89 0.79 0.96 16 8 C 0.19 6.81 6.45 38.35 0.25 7.06 16 9 N -0.64 -24.35 4.93 -179.07 -0.88 -25.24 16 10 C 0.02 0.90 5.91 39.02 0.23 1.13 16 11 C -0.12 -4.84 7.36 22.38 0.16 -4.68 16 12 C -0.21 -8.61 10.03 22.41 0.22 -8.38 16 13 C -0.12 -5.16 9.96 22.01 0.22 -4.94 16 14 C -0.17 -8.25 8.62 22.46 0.19 -8.05 16 15 C 0.07 3.59 5.58 -21.16 -0.12 3.47 16 16 C -0.48 -23.71 8.65 23.36 0.20 -23.51 16 17 H 0.08 3.61 6.96 -2.91 -0.02 3.59 16 18 C 0.03 1.64 5.24 85.24 0.45 2.09 16 19 N -0.83 -41.50 10.78 21.82 0.24 -41.26 16 20 Si 0.98 36.38 29.58 68.60 2.03 38.41 16 21 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 22 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.09 1.84 7.73 -2.39 -0.02 1.82 16 26 H 0.07 1.74 6.76 -2.38 -0.02 1.72 16 27 H 0.19 4.19 8.06 -2.91 -0.02 4.17 16 28 H 0.16 6.32 5.28 -2.91 -0.02 6.30 16 29 H 0.41 14.45 6.05 -92.71 -0.56 13.89 16 30 H 0.11 4.24 6.64 -2.91 -0.02 4.22 16 31 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.11 5.61 6.12 -2.91 -0.02 5.59 16 34 H 0.29 13.17 8.30 -92.70 -0.77 12.40 16 Total: -1.00 -54.08 290.60 4.97 -49.11 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: 0.59 Total: 37.33 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 4.26 Total: -38.39 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -2.67 Total: -83.87 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.75 Total: -2.58 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Total: -54.08 4.97 -49.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216195119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.224 kcal (2) G-P(sol) polarization free energy of solvation -54.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds