Wall clock time and date at job start Mon Mar 30 2020 01:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38729 * 120.83304 * 2 1 4 4 F 1.35094 * 120.40466 * 359.97438 * 3 2 1 5 5 C 1.38489 * 119.19363 * 180.02562 * 3 2 1 6 6 N 1.31875 * 120.89339 * 359.97438 * 5 3 2 7 7 C 1.31775 * 121.82168 * 359.73252 * 6 5 3 8 8 C 1.38962 * 120.71154 * 0.53018 * 7 6 5 9 9 N 1.39743 * 120.47676 * 179.75189 * 8 7 6 10 10 C 1.39716 * 119.99796 * 255.28304 * 9 8 7 11 11 C 1.39354 * 119.95749 * 5.93002 * 10 9 8 12 12 C 1.38466 * 120.42399 * 179.97438 * 11 10 9 13 13 C 1.37694 * 120.32820 * 359.96461 * 12 11 10 14 14 C 1.40754 * 119.89578 * 0.03517 * 13 12 11 15 15 C 1.41407 * 120.20913 * 180.25544 * 14 13 12 16 16 H 1.08006 * 119.99710 * 331.94690 * 15 14 13 17 17 C 1.39929 * 120.00277 * 151.94350 * 15 14 13 18 18 N 1.30833 * 119.99657 * 348.16929 * 17 15 14 19 19 Si 1.86802 * 120.00235 * 168.17141 * 17 15 14 20 20 H 1.48503 * 109.47052 * 89.99885 * 19 17 15 21 21 H 1.48495 * 109.47149 * 210.00224 * 19 17 15 22 22 H 1.48508 * 109.46916 * 330.00072 * 19 17 15 23 23 C 1.38302 * 119.95016 * 185.91168 * 10 9 8 24 24 H 1.08997 * 109.47264 * 269.98546 * 1 2 3 25 25 H 1.09005 * 109.46832 * 29.98111 * 1 2 3 26 26 H 1.08999 * 109.47427 * 149.97417 * 1 2 3 27 27 H 1.08000 * 119.55216 * 180.02562 * 5 3 2 28 28 H 1.08007 * 119.64074 * 180.28593 * 7 6 5 29 29 H 0.96997 * 119.99810 * 75.28881 * 9 8 7 30 30 H 1.07999 * 119.78726 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.83769 * 180.02562 * 12 11 10 32 32 H 1.08000 * 120.05347 * 180.02562 * 13 12 11 33 33 H 0.96998 * 119.99726 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.16055 * 0.04546 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2180 1.1912 0.0000 4 9 1.5680 2.3755 -0.0005 5 6 3.6024 1.1516 -0.0005 6 7 4.2468 0.0010 -0.0005 7 6 3.6095 -1.1523 0.0052 8 6 2.2206 -1.1957 0.0004 9 7 1.5497 -2.4216 0.0013 10 6 0.9488 -2.8899 -1.1698 11 6 1.1230 -2.1971 -2.3663 12 6 0.5323 -2.6529 -3.5328 13 6 -0.2336 -3.7971 -3.5233 14 6 -0.4185 -4.5075 -2.3223 15 6 -1.1994 -5.6864 -2.3060 16 1 -1.9965 -5.8160 -3.0231 17 6 -0.9392 -6.6849 -1.3609 18 7 0.1574 -6.6417 -0.6487 19 14 -2.1576 -8.0796 -1.1162 20 1 -1.8163 -9.2008 -2.0283 21 1 -2.0957 -8.5498 0.2910 22 1 -3.5295 -7.5969 -1.4169 23 6 0.1823 -4.0407 -1.1401 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3634 -0.8897 -0.5142 27 1 4.1617 2.0755 -0.0001 28 1 4.1728 -2.0739 0.0097 29 1 1.5012 -2.9473 0.8151 30 1 1.7225 -1.2990 -2.3839 31 1 0.6739 -2.1088 -4.4550 32 1 -0.6919 -4.1488 -4.4358 33 1 0.3375 -7.3337 0.0067 34 1 0.0463 -4.5782 -0.2133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216195498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:41 Heat of formation + Delta-G solvation = 9.250054 kcal Electronic energy + Delta-G solvation = -19923.834411 eV Core-core repulsion = 16735.498496 eV Total energy + Delta-G solvation = -3188.335915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.93700 -40.27113 -37.86498 -35.41973 -33.50994 -32.86223 -30.22221 -29.54856 -28.23507 -26.86849 -25.28934 -22.99183 -22.23033 -21.15234 -20.19541 -17.81143 -17.43824 -17.03607 -16.28209 -16.17900 -15.68558 -15.22380 -14.79145 -14.50127 -13.84172 -13.46131 -13.12821 -12.90311 -12.81690 -12.78035 -12.58437 -12.35683 -11.82976 -11.60928 -11.34513 -11.08932 -10.81525 -10.54242 -9.98819 -9.86491 -9.61930 -9.39608 -9.21376 -9.00796 -8.71237 -7.39898 -6.80753 -6.45745 -4.42653 0.96388 1.13227 2.78200 3.04621 3.06288 3.09936 3.20872 3.63206 3.81456 3.92341 4.20841 4.53947 4.63741 4.73529 4.80178 5.10875 5.56010 5.64598 5.71115 5.74138 5.90463 6.11306 6.19024 6.37212 6.44224 6.57832 6.78813 6.95987 7.04274 7.23149 7.26803 7.64429 7.79862 7.86893 7.94505 8.05776 8.35328 8.43247 8.68062 8.89743 8.95369 10.20176 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.030410 B = 0.004542 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.517139 B = 6163.650088 C = 6335.390584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C 0.049 3.951 4 F -0.133 7.133 5 C 0.058 3.942 6 N -0.455 5.455 7 C 0.081 3.919 8 C 0.159 3.841 9 N -0.709 5.709 10 C 0.203 3.797 11 C -0.284 4.284 12 C -0.068 4.068 13 C -0.246 4.246 14 C 0.136 3.864 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.799 5.799 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.212 4.212 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.163 0.837 28 H 0.164 0.836 29 H 0.405 0.595 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.278 0.722 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 9.062 4.138 10.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C 0.026 3.974 4 F -0.111 7.111 5 C -0.100 4.100 6 N -0.163 5.163 7 C -0.079 4.079 8 C 0.062 3.938 9 N -0.341 5.341 10 C 0.108 3.892 11 C -0.307 4.307 12 C -0.087 4.087 13 C -0.267 4.267 14 C 0.133 3.867 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.425 5.425 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.236 4.236 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.180 0.820 28 H 0.181 0.819 29 H 0.243 0.757 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.642 9.066 4.227 10.646 hybrid contribution -1.400 -0.654 0.385 1.592 sum 2.243 8.412 4.612 9.852 Atomic orbital electron populations 1.20738 0.88971 1.04644 1.02833 1.20975 0.98477 0.91445 0.98368 1.18651 0.91509 0.81077 1.06123 1.91478 1.81604 1.44050 1.94000 1.22776 0.89515 0.97651 1.00071 1.67693 1.39516 0.97680 1.11459 1.23351 0.91520 0.96327 0.96659 1.18226 0.91020 0.86557 0.98020 1.41778 1.61588 1.18844 1.11911 1.17589 0.93632 0.93846 0.84141 1.19889 1.13768 1.04248 0.92749 1.20299 0.96964 0.95861 0.95560 1.20963 1.08300 1.00127 0.97271 1.17338 0.88859 0.90802 0.89678 1.19558 1.15356 1.00523 1.13823 0.90518 1.25866 0.94891 0.99232 0.94108 1.69813 1.21657 1.32376 1.18695 0.86324 0.81582 0.80677 0.78185 1.19547 1.20219 1.18563 1.20819 1.06121 0.96782 0.99832 0.90718 0.91296 0.88790 0.81965 0.81930 0.75720 0.89944 0.89410 0.89086 0.91113 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.67 36.01 0.35 -1.35 16 2 C -0.08 -1.25 5.48 -104.07 -0.57 -1.83 16 3 C 0.05 0.68 7.28 -39.31 -0.29 0.40 16 4 F -0.13 -1.81 16.61 2.25 0.04 -1.77 16 5 C 0.06 0.77 11.17 -17.44 -0.19 0.57 16 6 N -0.46 -6.69 10.35 -13.01 -0.13 -6.82 16 7 C 0.08 1.22 11.12 -17.31 -0.19 1.03 16 8 C 0.16 2.54 4.55 -83.61 -0.38 2.16 16 9 N -0.71 -12.45 4.92 -8.36 -0.04 -12.49 16 10 C 0.20 4.36 5.22 -83.83 -0.44 3.92 16 11 C -0.28 -6.17 8.79 -39.08 -0.34 -6.52 16 12 C -0.07 -1.51 10.01 -39.70 -0.40 -1.91 16 13 C -0.25 -5.93 9.79 -38.83 -0.38 -6.31 16 14 C 0.14 3.51 5.56 -106.85 -0.59 2.92 16 15 C -0.46 -11.93 9.06 -37.74 -0.34 -12.27 16 16 H 0.08 1.91 7.87 -52.48 -0.41 1.50 16 17 C 0.08 1.84 5.24 -17.34 -0.09 1.75 16 18 N -0.80 -19.91 10.84 55.55 0.60 -19.31 16 19 Si 0.91 18.25 29.58 -169.99 -5.03 13.22 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 23 C -0.21 -5.15 8.50 -38.67 -0.33 -5.48 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.94 7.73 -51.93 -0.40 0.54 16 26 H 0.09 1.62 5.92 -51.93 -0.31 1.31 16 27 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.16 2.27 8.06 -52.48 -0.42 1.85 16 29 H 0.41 6.56 8.83 -40.82 -0.36 6.20 16 30 H 0.08 1.73 6.75 -52.49 -0.35 1.37 16 31 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 34 H 0.12 3.05 6.20 -52.49 -0.33 2.73 16 LS Contribution 297.03 15.07 4.48 4.48 Total: -1.00 -26.56 297.03 -7.69 -34.25 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -3.41 Total: 11.36 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -4.19 Total: -22.91 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.43 Total: -38.62 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.56 -7.69 -34.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216195498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.496 kcal (2) G-P(sol) polarization free energy of solvation -26.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds