Wall clock time and date at job start Mon Mar 30 2020 01:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38729 * 120.83304 * 2 1 4 4 F 1.35094 * 120.40466 * 359.97438 * 3 2 1 5 5 C 1.38489 * 119.19363 * 180.02562 * 3 2 1 6 6 N 1.31875 * 120.89339 * 359.97438 * 5 3 2 7 7 C 1.31775 * 121.82168 * 359.73252 * 6 5 3 8 8 C 1.38962 * 120.71154 * 0.53018 * 7 6 5 9 9 N 1.39743 * 120.47676 * 179.75189 * 8 7 6 10 10 C 1.39716 * 119.99796 * 255.28304 * 9 8 7 11 11 C 1.39354 * 119.95749 * 5.93002 * 10 9 8 12 12 C 1.38466 * 120.42399 * 179.97438 * 11 10 9 13 13 C 1.37694 * 120.32820 * 359.96461 * 12 11 10 14 14 C 1.40754 * 119.89578 * 0.03517 * 13 12 11 15 15 C 1.41407 * 120.20913 * 180.25544 * 14 13 12 16 16 H 1.08006 * 119.99710 * 331.94690 * 15 14 13 17 17 C 1.39929 * 120.00277 * 151.94350 * 15 14 13 18 18 N 1.30833 * 119.99657 * 348.16929 * 17 15 14 19 19 Si 1.86802 * 120.00235 * 168.17141 * 17 15 14 20 20 H 1.48503 * 109.47052 * 89.99885 * 19 17 15 21 21 H 1.48495 * 109.47149 * 210.00224 * 19 17 15 22 22 H 1.48508 * 109.46916 * 330.00072 * 19 17 15 23 23 C 1.38302 * 119.95016 * 185.91168 * 10 9 8 24 24 H 1.08997 * 109.47264 * 269.98546 * 1 2 3 25 25 H 1.09005 * 109.46832 * 29.98111 * 1 2 3 26 26 H 1.08999 * 109.47427 * 149.97417 * 1 2 3 27 27 H 1.08000 * 119.55216 * 180.02562 * 5 3 2 28 28 H 1.08007 * 119.64074 * 180.28593 * 7 6 5 29 29 H 0.96997 * 119.99810 * 75.28881 * 9 8 7 30 30 H 1.07999 * 119.78726 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.83769 * 180.02562 * 12 11 10 32 32 H 1.08000 * 120.05347 * 180.02562 * 13 12 11 33 33 H 0.96998 * 119.99726 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.16055 * 0.04546 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2180 1.1912 0.0000 4 9 1.5680 2.3755 -0.0005 5 6 3.6024 1.1516 -0.0005 6 7 4.2468 0.0010 -0.0005 7 6 3.6095 -1.1523 0.0052 8 6 2.2206 -1.1957 0.0004 9 7 1.5497 -2.4216 0.0013 10 6 0.9488 -2.8899 -1.1698 11 6 1.1230 -2.1971 -2.3663 12 6 0.5323 -2.6529 -3.5328 13 6 -0.2336 -3.7971 -3.5233 14 6 -0.4185 -4.5075 -2.3223 15 6 -1.1994 -5.6864 -2.3060 16 1 -1.9965 -5.8160 -3.0231 17 6 -0.9392 -6.6849 -1.3609 18 7 0.1574 -6.6417 -0.6487 19 14 -2.1576 -8.0796 -1.1162 20 1 -1.8163 -9.2008 -2.0283 21 1 -2.0957 -8.5498 0.2910 22 1 -3.5295 -7.5969 -1.4169 23 6 0.1823 -4.0407 -1.1401 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3634 -0.8897 -0.5142 27 1 4.1617 2.0755 -0.0001 28 1 4.1728 -2.0739 0.0097 29 1 1.5012 -2.9473 0.8151 30 1 1.7225 -1.2990 -2.3839 31 1 0.6739 -2.1088 -4.4550 32 1 -0.6919 -4.1488 -4.4358 33 1 0.3375 -7.3337 0.0067 34 1 0.0463 -4.5782 -0.2133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216195498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:40 Heat of formation + Delta-G solvation = -3.946373 kcal Electronic energy + Delta-G solvation = -19924.406651 eV Core-core repulsion = 16735.498496 eV Total energy + Delta-G solvation = -3188.908155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.02828 -41.50055 -39.51508 -36.92404 -35.24796 -34.15919 -31.58315 -31.37610 -29.58538 -28.25345 -27.13916 -24.26040 -23.41179 -22.92754 -21.86211 -19.39007 -18.64471 -18.45300 -17.76888 -17.37190 -16.89804 -16.71203 -16.43554 -16.19995 -14.95692 -14.80353 -14.71916 -14.37130 -14.29623 -14.10810 -13.91683 -13.72671 -13.51538 -12.99044 -12.82215 -12.73808 -12.63571 -12.15963 -11.66332 -11.48402 -11.38170 -10.96836 -10.63013 -10.34341 -9.92514 -9.25378 -8.60755 -8.13005 -6.34824 -0.18652 -0.04830 1.04859 1.24997 1.41207 1.52266 1.56697 2.24338 2.39020 2.55254 2.80645 3.05508 3.43836 3.59491 3.65577 3.80650 3.93051 4.41305 4.46449 4.56657 4.58898 4.67711 4.73572 4.94913 4.99779 5.14918 5.19466 5.22037 5.36762 5.46922 5.57761 5.90180 6.04334 6.16698 6.19447 6.53684 6.71289 6.84802 6.94978 7.02539 7.12693 8.40376 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.030410 B = 0.004542 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.517139 B = 6163.650088 C = 6335.390584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C 0.048 3.952 4 F -0.128 7.128 5 C 0.073 3.927 6 N -0.464 5.464 7 C 0.083 3.917 8 C 0.137 3.863 9 N -0.699 5.699 10 C 0.220 3.780 11 C -0.284 4.284 12 C -0.066 4.066 13 C -0.271 4.271 14 C 0.108 3.892 15 C -0.500 4.500 16 H 0.072 0.928 17 C 0.038 3.962 18 N -0.826 5.826 19 Si 0.979 3.021 20 H -0.265 1.265 21 H -0.267 1.267 22 H -0.261 1.261 23 C -0.235 4.235 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.198 0.802 28 H 0.170 0.830 29 H 0.410 0.590 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.285 0.715 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 10.304 4.652 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C 0.026 3.974 4 F -0.107 7.107 5 C -0.086 4.086 6 N -0.172 5.172 7 C -0.076 4.076 8 C 0.040 3.960 9 N -0.331 5.331 10 C 0.123 3.877 11 C -0.307 4.307 12 C -0.085 4.085 13 C -0.291 4.291 14 C 0.105 3.895 15 C -0.530 4.530 16 H 0.090 0.910 17 C -0.177 4.177 18 N -0.453 5.453 19 Si 0.800 3.200 20 H -0.190 1.190 21 H -0.191 1.191 22 H -0.185 1.185 23 C -0.259 4.259 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.215 0.785 28 H 0.187 0.813 29 H 0.248 0.752 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.348 10.335 4.757 12.180 hybrid contribution -1.507 -0.842 0.249 1.744 sum 2.841 9.493 5.006 11.102 Atomic orbital electron populations 1.20693 0.88904 1.03721 1.03541 1.21054 0.98690 0.91792 0.98182 1.18644 0.91843 0.80757 1.06154 1.91495 1.81595 1.43616 1.93945 1.23335 0.89363 0.98390 0.97476 1.67794 1.39516 0.97900 1.11982 1.23429 0.91083 0.97040 0.96034 1.18279 0.91384 0.85892 1.00405 1.41627 1.60924 1.19584 1.10930 1.17539 0.92127 0.92586 0.85484 1.20058 1.13525 1.04472 0.92596 1.20604 0.95775 0.95197 0.96924 1.21093 1.09736 1.01283 0.97024 1.17702 0.89576 0.91427 0.90781 1.19798 1.16203 1.01735 1.15270 0.90986 1.26637 0.96390 1.01317 0.93308 1.69867 1.22877 1.33442 1.19092 0.85257 0.78944 0.77342 0.78470 1.19029 1.19130 1.18477 1.20721 1.07952 0.98165 0.99014 0.89282 0.90268 0.91511 0.78498 0.81269 0.75164 0.88694 0.86709 0.88908 0.90428 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.16 9.67 71.24 0.69 -2.47 16 2 C -0.09 -2.49 5.48 -19.50 -0.11 -2.60 16 3 C 0.05 1.22 7.28 22.45 0.16 1.38 16 4 F -0.13 -3.10 16.61 44.97 0.75 -2.35 16 5 C 0.07 1.67 11.17 84.75 0.95 2.61 16 6 N -0.46 -12.34 10.35 -195.07 -2.02 -14.36 16 7 C 0.08 2.34 11.12 84.87 0.94 3.29 16 8 C 0.14 4.18 4.55 38.30 0.17 4.35 16 9 N -0.70 -24.32 4.92 -180.37 -0.89 -25.21 16 10 C 0.22 9.49 5.22 38.17 0.20 9.69 16 11 C -0.28 -12.14 8.79 22.59 0.20 -11.94 16 12 C -0.07 -2.91 10.01 22.20 0.22 -2.69 16 13 C -0.27 -13.33 9.79 22.76 0.22 -13.11 16 14 C 0.11 5.76 5.56 -21.31 -0.12 5.64 16 15 C -0.50 -26.74 9.06 23.46 0.21 -26.52 16 16 H 0.07 3.75 7.87 -2.91 -0.02 3.72 16 17 C 0.04 1.87 5.24 85.25 0.45 2.31 16 18 N -0.83 -42.05 10.84 21.82 0.24 -41.82 16 19 Si 0.98 37.79 29.58 68.60 2.03 39.81 16 20 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 21 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 23 C -0.23 -11.75 8.50 22.86 0.19 -11.55 16 24 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.08 2.04 7.73 -2.38 -0.02 2.02 16 26 H 0.07 2.27 5.92 -2.39 -0.01 2.26 16 27 H 0.20 3.08 8.06 -2.91 -0.02 3.05 16 28 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 29 H 0.41 13.32 8.83 -92.71 -0.82 12.50 16 30 H 0.09 3.81 6.75 -2.91 -0.02 3.79 16 31 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 32 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 33 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 34 H 0.11 5.64 6.20 -2.91 -0.02 5.62 16 Total: -1.00 -57.24 297.03 4.82 -52.42 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.33 Total: 33.11 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 4.39 Total: -41.61 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -2.67 Total: -81.39 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.75 Total: -2.35 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.81 kcal Total: -57.24 4.82 -52.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216195498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.477 kcal (2) G-P(sol) polarization free energy of solvation -57.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds