Wall clock time and date at job start Mon Mar 30 2020 01:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50695 * 120.00238 * 2 1 4 4 N 1.46499 * 109.47041 * 125.00055 * 3 2 1 5 5 C 1.34714 * 125.81368 * 125.00391 * 4 3 2 6 6 C 1.37878 * 107.38576 * 179.69746 * 5 4 3 7 7 C 1.47918 * 126.37177 * 180.28017 * 6 5 4 8 8 C 1.39068 * 120.31788 * 309.73166 * 7 6 5 9 9 C 1.38343 * 119.95960 * 179.73984 * 8 7 6 10 10 F 1.35101 * 119.69427 * 180.23282 * 9 8 7 11 11 C 1.39239 * 120.61007 * 0.51138 * 9 8 7 12 12 C 1.36337 * 120.65421 * 359.76619 * 11 9 8 13 13 C 1.40779 * 120.01582 * 359.97438 * 12 11 9 14 14 C 1.40826 * 120.30479 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00319 * 153.36249 * 14 13 12 16 16 C 1.39980 * 120.00246 * 333.37021 * 14 13 12 17 17 N 1.30852 * 119.99581 * 344.00585 * 16 14 13 18 18 Si 1.86799 * 120.00647 * 164.00387 * 16 14 13 19 19 H 1.48503 * 109.46998 * 59.99903 * 18 16 14 20 20 H 1.48497 * 109.47262 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47092 * 300.00133 * 18 16 14 22 22 C 1.41115 * 107.26346 * 0.26514 * 6 5 4 23 23 N 1.30553 * 108.11662 * 359.97438 * 22 6 5 24 24 H 1.07999 * 119.99826 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.99970 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00045 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47388 * 5.00161 * 3 2 1 28 28 H 1.08998 * 109.47676 * 244.99739 * 3 2 1 29 29 H 1.07998 * 126.30329 * 359.95818 * 5 4 3 30 30 H 1.08001 * 120.01923 * 359.97438 * 8 7 6 31 31 H 1.08004 * 119.67552 * 179.74185 * 11 9 8 32 32 H 1.08003 * 119.99215 * 179.97438 * 12 11 9 33 33 H 0.96995 * 119.99960 * 180.02562 * 17 16 14 34 34 H 1.08000 * 125.94445 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 4.3207 1.5512 1.0558 6 6 4.8205 1.5001 2.3398 7 6 6.2318 1.6904 2.7400 8 6 7.2442 0.9824 2.1013 9 6 8.5620 1.1702 2.4779 10 9 9.5417 0.4831 1.8506 11 6 8.8876 2.0564 3.5014 12 6 7.9146 2.7590 4.1482 13 6 6.5652 2.5929 3.7831 14 6 5.5552 3.3151 4.4475 15 1 4.6276 3.5372 3.9408 16 6 5.7535 3.7455 5.7647 17 7 6.7157 3.2273 6.4844 18 14 4.6446 5.0594 6.4951 19 1 3.2379 4.5837 6.4811 20 1 5.0593 5.3355 7.8940 21 1 4.7547 6.3030 5.6911 22 6 3.7353 1.2328 3.2013 23 7 2.6555 1.1316 2.4746 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9313 29 1 4.8878 1.7374 0.1558 30 1 7.0020 0.2893 1.3093 31 1 9.9211 2.1882 3.7859 32 1 8.1792 3.4433 4.9408 33 1 6.8529 3.5252 7.3972 34 1 3.7886 1.1306 4.2752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222391035.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:04 Heat of formation + Delta-G solvation = 64.698515 kcal Electronic energy + Delta-G solvation = -19672.270055 eV Core-core repulsion = 16486.338565 eV Total energy + Delta-G solvation = -3185.931489 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.45053 -40.41011 -37.36564 -35.22601 -33.65226 -31.62006 -30.75923 -29.43479 -28.02946 -25.87363 -24.93484 -21.82654 -21.16515 -20.55346 -19.68075 -19.27296 -17.43066 -16.80152 -15.56915 -15.35001 -15.18958 -14.84313 -14.50726 -14.20215 -14.05770 -13.47475 -13.05974 -12.96732 -12.55722 -12.20081 -12.04046 -11.93312 -11.82398 -11.33270 -11.28066 -11.10692 -10.87386 -10.40941 -10.13479 -9.95824 -9.69107 -9.46069 -9.21185 -8.78111 -8.13891 -7.39656 -7.12263 -6.82202 -4.39567 1.98221 2.33963 2.65893 2.79332 3.03174 3.06438 3.12903 3.16453 3.72491 3.86975 4.48684 4.68367 4.84113 5.05137 5.39943 5.44124 5.53750 5.67839 5.73521 5.85670 6.09703 6.15879 6.34611 6.42345 6.52858 6.63099 6.65419 6.95391 7.05235 7.14393 7.32899 7.42550 7.57693 7.73490 7.84145 7.95614 8.15047 8.40126 8.49420 8.75780 8.83805 10.06654 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.006808 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.094401 B = 4111.531324 C = 6041.229404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.162 4.162 3 C 0.167 3.833 4 N -0.381 5.381 5 C 0.024 3.976 6 C -0.129 4.129 7 C -0.118 4.118 8 C -0.103 4.103 9 C -0.048 4.048 10 F -0.176 7.176 11 C -0.128 4.128 12 C -0.137 4.137 13 C 0.120 3.880 14 C -0.441 4.441 15 H 0.084 0.916 16 C 0.076 3.924 17 N -0.788 5.788 18 Si 0.906 3.094 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.263 1.263 22 C 0.076 3.924 23 N -0.312 5.312 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.166 0.834 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.284 0.716 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 -1.249 -7.691 10.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C 0.046 3.954 4 N -0.164 5.164 5 C -0.120 4.120 6 C -0.140 4.140 7 C -0.121 4.121 8 C -0.122 4.122 9 C -0.068 4.068 10 F -0.155 7.155 11 C -0.147 4.147 12 C -0.157 4.157 13 C 0.117 3.883 14 C -0.470 4.470 15 H 0.102 0.898 16 C -0.143 4.143 17 N -0.412 5.412 18 Si 0.731 3.269 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.111 4.111 23 N -0.133 5.133 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.130 0.870 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.183 0.817 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.179 -1.463 -7.576 11.244 hybrid contribution 0.689 0.546 0.331 0.939 sum -7.490 -0.916 -7.245 10.461 Atomic orbital electron populations 1.23833 0.95625 1.02082 0.99316 1.23019 0.96208 0.98150 1.00737 1.20601 0.91929 0.96451 0.86449 1.48138 1.05537 1.57164 1.05574 1.22816 0.84443 1.05102 0.99602 1.19009 0.94260 1.10303 0.90460 1.17709 0.88412 1.02160 1.03798 1.20498 0.91008 1.00429 1.00292 1.17178 0.84604 1.03485 1.01513 1.91278 1.62435 1.79444 1.82358 1.20462 0.98983 0.98514 0.96775 1.20902 0.91861 1.01603 1.01286 1.17570 0.92451 0.88751 0.89562 1.19496 1.02047 1.28751 0.96685 0.89825 1.25957 0.95437 0.95630 0.97288 1.69800 1.27531 1.34716 1.09196 0.86374 0.80999 0.81472 0.78096 1.18760 1.20269 1.18798 1.24083 0.89333 0.97496 1.00158 1.77037 1.24115 1.25518 0.86614 0.88349 0.88126 0.87041 0.90046 0.88367 0.81704 0.88265 0.88353 0.85644 0.90527 0.79969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 14.32 29.02 0.42 -1.25 16 2 C -0.16 -1.83 9.69 -36.03 -0.35 -2.18 16 3 C 0.17 1.99 6.93 -5.20 -0.04 1.95 16 4 N -0.38 -6.36 3.65 -61.92 -0.23 -6.58 16 5 C 0.02 0.43 11.40 -16.42 -0.19 0.24 16 6 C -0.13 -2.70 4.97 -104.97 -0.52 -3.22 16 7 C -0.12 -2.73 5.82 -104.22 -0.61 -3.33 16 8 C -0.10 -2.31 9.68 -39.23 -0.38 -2.69 16 9 C -0.05 -1.12 7.31 -39.17 -0.29 -1.41 16 10 F -0.18 -3.96 17.26 2.25 0.04 -3.92 16 11 C -0.13 -2.99 9.94 -39.89 -0.40 -3.38 16 12 C -0.14 -3.38 8.61 -39.31 -0.34 -3.72 16 13 C 0.12 2.97 5.57 -106.55 -0.59 2.38 16 14 C -0.44 -10.80 7.73 -37.95 -0.29 -11.10 16 15 H 0.08 2.05 6.70 -52.48 -0.35 1.70 16 16 C 0.08 1.78 5.16 -17.32 -0.09 1.69 16 17 N -0.79 -19.05 10.99 55.55 0.61 -18.44 16 18 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 16 19 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 22 C 0.08 1.56 10.37 -17.00 -0.18 1.38 16 23 N -0.31 -6.08 12.33 30.84 0.38 -5.70 16 24 H 0.10 0.87 7.84 -52.49 -0.41 0.45 16 25 H 0.10 0.85 8.06 -52.48 -0.42 0.43 16 26 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 27 H 0.08 0.90 7.79 -51.93 -0.40 0.49 16 28 H 0.10 0.90 8.06 -51.93 -0.42 0.48 16 29 H 0.17 2.42 8.06 -52.49 -0.42 2.00 16 30 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 32 H 0.13 3.14 6.24 -52.48 -0.33 2.81 16 33 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 34 H 0.18 3.75 7.94 -52.49 -0.42 3.34 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -27.54 305.79 -7.04 -34.57 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -3.58 Total: 7.17 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -3.84 Total: -24.63 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.76 Total: -30.72 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.04 Total: -3.92 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.54 -7.04 -34.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222391035.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.271 kcal (2) G-P(sol) polarization free energy of solvation -27.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds