Wall clock time and date at job start Mon Mar 30 2020 01:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50695 * 120.00238 * 2 1 4 4 N 1.46499 * 109.47041 * 125.00055 * 3 2 1 5 5 C 1.34714 * 125.81368 * 125.00391 * 4 3 2 6 6 C 1.37878 * 107.38576 * 179.69746 * 5 4 3 7 7 C 1.47918 * 126.37177 * 180.28017 * 6 5 4 8 8 C 1.39068 * 120.31788 * 309.73166 * 7 6 5 9 9 C 1.38343 * 119.95960 * 179.73984 * 8 7 6 10 10 F 1.35101 * 119.69427 * 180.23282 * 9 8 7 11 11 C 1.39239 * 120.61007 * 0.51138 * 9 8 7 12 12 C 1.36337 * 120.65421 * 359.76619 * 11 9 8 13 13 C 1.40779 * 120.01582 * 359.97438 * 12 11 9 14 14 C 1.40826 * 120.30479 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00319 * 153.36249 * 14 13 12 16 16 C 1.39980 * 120.00246 * 333.37021 * 14 13 12 17 17 N 1.30852 * 119.99581 * 344.00585 * 16 14 13 18 18 Si 1.86799 * 120.00647 * 164.00387 * 16 14 13 19 19 H 1.48503 * 109.46998 * 59.99903 * 18 16 14 20 20 H 1.48497 * 109.47262 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47092 * 300.00133 * 18 16 14 22 22 C 1.41115 * 107.26346 * 0.26514 * 6 5 4 23 23 N 1.30553 * 108.11662 * 359.97438 * 22 6 5 24 24 H 1.07999 * 119.99826 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.99970 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00045 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47388 * 5.00161 * 3 2 1 28 28 H 1.08998 * 109.47676 * 244.99739 * 3 2 1 29 29 H 1.07998 * 126.30329 * 359.95818 * 5 4 3 30 30 H 1.08001 * 120.01923 * 359.97438 * 8 7 6 31 31 H 1.08004 * 119.67552 * 179.74185 * 11 9 8 32 32 H 1.08003 * 119.99215 * 179.97438 * 12 11 9 33 33 H 0.96995 * 119.99960 * 180.02562 * 17 16 14 34 34 H 1.08000 * 125.94445 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 4.3207 1.5512 1.0558 6 6 4.8205 1.5001 2.3398 7 6 6.2318 1.6904 2.7400 8 6 7.2442 0.9824 2.1013 9 6 8.5620 1.1702 2.4779 10 9 9.5417 0.4831 1.8506 11 6 8.8876 2.0564 3.5014 12 6 7.9146 2.7590 4.1482 13 6 6.5652 2.5929 3.7831 14 6 5.5552 3.3151 4.4475 15 1 4.6276 3.5372 3.9408 16 6 5.7535 3.7455 5.7647 17 7 6.7157 3.2273 6.4844 18 14 4.6446 5.0594 6.4951 19 1 3.2379 4.5837 6.4811 20 1 5.0593 5.3355 7.8940 21 1 4.7547 6.3030 5.6911 22 6 3.7353 1.2328 3.2013 23 7 2.6555 1.1316 2.4746 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9313 29 1 4.8878 1.7374 0.1558 30 1 7.0020 0.2893 1.3093 31 1 9.9211 2.1882 3.7859 32 1 8.1792 3.4433 4.9408 33 1 6.8529 3.5252 7.3972 34 1 3.7886 1.1306 4.2752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222391035.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:04 Heat of formation + Delta-G solvation = 51.968321 kcal Electronic energy + Delta-G solvation = -19672.822077 eV Core-core repulsion = 16486.338565 eV Total energy + Delta-G solvation = -3186.483512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.25877 -41.84997 -39.12982 -36.21630 -35.44818 -33.01764 -32.25384 -31.24046 -29.54426 -27.17487 -26.63159 -23.48072 -22.87421 -21.83080 -21.01257 -20.58817 -19.22320 -18.32172 -17.22448 -16.99993 -16.37522 -16.12894 -16.02343 -15.92260 -15.76030 -14.81076 -14.66659 -14.17788 -14.10191 -13.80139 -13.71263 -13.60242 -12.99726 -12.96690 -12.75489 -12.52749 -12.21070 -12.16415 -11.74979 -11.62128 -11.21942 -10.99533 -10.50790 -10.17543 -9.79508 -9.21094 -8.81196 -8.55383 -6.24179 0.70433 0.90674 1.09963 1.18875 1.41347 1.49584 1.52275 2.00915 2.11613 2.21764 2.69720 3.64623 3.73400 3.93154 4.02660 4.15905 4.18174 4.35811 4.37461 4.42564 4.62581 4.89756 4.93325 4.98248 5.03512 5.21085 5.27114 5.34623 5.61242 5.62045 5.66561 5.74290 5.94553 6.02265 6.11594 6.29771 6.35194 6.65645 6.91142 6.94590 7.01469 8.31949 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.006808 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.094401 B = 4111.531324 C = 6041.229404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.185 4.185 3 C 0.156 3.844 4 N -0.368 5.368 5 C 0.049 3.951 6 C -0.170 4.170 7 C -0.113 4.113 8 C -0.105 4.105 9 C -0.058 4.058 10 F -0.172 7.172 11 C -0.133 4.133 12 C -0.157 4.157 13 C 0.093 3.907 14 C -0.458 4.458 15 H 0.077 0.923 16 C 0.042 3.958 17 N -0.816 5.816 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.268 1.268 21 H -0.262 1.262 22 C 0.060 3.940 23 N -0.326 5.326 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.132 0.868 29 H 0.200 0.800 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.290 0.710 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.453 -1.058 -9.303 12.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.203 4.203 3 C 0.037 3.963 4 N -0.150 5.150 5 C -0.098 4.098 6 C -0.181 4.181 7 C -0.116 4.116 8 C -0.125 4.125 9 C -0.078 4.078 10 F -0.151 7.151 11 C -0.153 4.153 12 C -0.176 4.176 13 C 0.090 3.910 14 C -0.486 4.486 15 H 0.095 0.905 16 C -0.175 4.175 17 N -0.441 5.441 18 Si 0.792 3.208 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.187 1.187 22 C -0.125 4.125 23 N -0.148 5.148 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.150 0.850 29 H 0.217 0.783 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.682 -1.286 -9.197 13.416 hybrid contribution 1.050 0.408 0.686 1.318 sum -8.632 -0.878 -8.512 12.155 Atomic orbital electron populations 1.24079 0.95232 1.03311 0.96700 1.22947 0.96747 0.97549 1.03092 1.21097 0.92046 0.97290 0.85870 1.48581 1.06043 1.54729 1.05661 1.23224 0.84899 1.02207 0.99454 1.19008 0.93355 1.13662 0.92095 1.17953 0.89945 1.00926 1.02749 1.20720 0.90509 1.00486 1.00744 1.17326 0.85155 1.03634 1.01642 1.91281 1.62303 1.79305 1.82226 1.20614 0.99584 0.98340 0.96721 1.20850 0.92372 1.02494 1.01896 1.17909 0.92722 0.89620 0.90712 1.19555 1.01887 1.29787 0.97394 0.90471 1.26638 0.96620 0.96979 0.97235 1.69842 1.28837 1.35696 1.09753 0.85416 0.78985 0.78749 0.77689 1.18838 1.19198 1.18659 1.23904 0.89933 0.98711 0.99916 1.76970 1.23725 1.25998 0.88074 0.87202 0.86864 0.87794 0.88791 0.85039 0.78293 0.86033 0.86819 0.86809 0.89888 0.81392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 14.32 67.79 0.97 -1.59 16 2 C -0.18 -3.67 9.69 25.65 0.25 -3.43 16 3 C 0.16 3.19 6.93 85.63 0.59 3.78 16 4 N -0.37 -11.39 3.65 -349.83 -1.28 -12.67 16 5 C 0.05 1.60 11.40 84.17 0.96 2.56 16 6 C -0.17 -7.01 4.97 -20.09 -0.10 -7.11 16 7 C -0.11 -5.24 5.82 -19.61 -0.11 -5.36 16 8 C -0.11 -4.65 9.68 22.49 0.22 -4.44 16 9 C -0.06 -2.67 7.31 22.54 0.16 -2.50 16 10 F -0.17 -7.55 17.26 44.97 0.78 -6.78 16 11 C -0.13 -6.28 9.94 22.07 0.22 -6.06 16 12 C -0.16 -7.92 8.61 22.45 0.19 -7.73 16 13 C 0.09 4.74 5.57 -21.12 -0.12 4.63 16 14 C -0.46 -22.97 7.73 23.33 0.18 -22.79 16 15 H 0.08 3.87 6.70 -2.91 -0.02 3.86 16 16 C 0.04 1.98 5.16 85.26 0.44 2.42 16 17 N -0.82 -40.35 10.99 21.84 0.24 -40.11 16 18 Si 0.97 37.03 29.59 68.60 2.03 39.06 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 20 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 22 C 0.06 2.52 10.37 85.59 0.89 3.41 16 23 N -0.33 -12.39 12.33 -56.34 -0.69 -13.09 16 24 H 0.11 1.56 7.84 -2.91 -0.02 1.53 16 25 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 26 H 0.10 2.23 8.06 -2.91 -0.02 2.20 16 27 H 0.09 1.74 7.79 -2.39 -0.02 1.72 16 28 H 0.13 1.81 8.06 -2.39 -0.02 1.79 16 29 H 0.20 5.06 8.06 -2.91 -0.02 5.03 16 30 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 31 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 32 H 0.11 5.92 6.24 -2.91 -0.02 5.90 16 33 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 34 H 0.17 7.27 7.94 -2.91 -0.02 7.24 16 Total: -1.00 -59.54 305.79 6.93 -52.61 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 1.11 Total: 25.19 kcal Atomic # 6 Polarization: -48.95 SS G_CDS: 4.74 Total: -44.21 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -1.73 Total: -65.86 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.78 Total: -6.78 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Total: -59.54 6.93 -52.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222391035.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.577 kcal (2) G-P(sol) polarization free energy of solvation -59.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds