Wall clock time and date at job start Mon Mar 30 2020 01:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50710 * 119.99912 * 2 1 4 4 N 1.46500 * 109.46912 * 124.99512 * 3 2 1 5 5 C 1.34705 * 125.81298 * 124.99741 * 4 3 2 6 6 C 1.37826 * 107.39632 * 180.02562 * 5 4 3 7 7 C 1.48021 * 126.36597 * 180.02562 * 6 5 4 8 8 C 1.40032 * 119.86126 * 180.02562 * 7 6 5 9 9 C 1.36187 * 120.18019 * 179.97438 * 8 7 6 10 10 C 1.40936 * 119.90102 * 0.02562 * 9 8 7 11 11 C 1.40950 * 120.13704 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00141 * 205.36239 * 11 10 9 13 13 C 1.39928 * 119.99894 * 25.36763 * 11 10 9 14 14 N 1.30869 * 120.00315 * 26.60218 * 13 11 10 15 15 Si 1.86800 * 120.00071 * 206.60173 * 13 11 10 16 16 H 1.48502 * 109.47324 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47509 * 299.99900 * 15 13 11 18 18 H 1.48502 * 109.47250 * 60.00007 * 15 13 11 19 19 C 1.41184 * 119.72918 * 0.26078 * 10 9 8 20 20 F 1.35097 * 120.09452 * 179.74765 * 19 10 9 21 21 C 1.36543 * 119.81178 * 359.48061 * 19 10 9 22 22 C 1.41081 * 107.27109 * 0.26549 * 6 5 4 23 23 N 1.30560 * 108.12244 * 359.55686 * 22 6 5 24 24 H 1.08004 * 119.99979 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.00361 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00260 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46767 * 4.99414 * 3 2 1 28 28 H 1.08999 * 109.46809 * 244.99710 * 3 2 1 29 29 H 1.08004 * 126.30238 * 0.02562 * 5 4 3 30 30 H 1.08003 * 119.91023 * 359.97438 * 8 7 6 31 31 H 1.07997 * 120.04862 * 180.02562 * 9 8 7 32 32 H 0.96998 * 119.99623 * 5.88430 * 14 13 11 33 33 H 1.08000 * 119.94815 * 180.25967 * 21 19 10 34 34 H 1.08003 * 125.93971 * 179.73095 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 4.3206 1.5513 1.0560 6 6 4.8215 1.4930 2.3387 7 6 6.2351 1.6756 2.7381 8 6 6.5951 1.5869 4.0884 9 6 7.8938 1.7533 4.4630 10 6 8.8779 2.0159 3.4889 11 6 10.2235 2.1895 3.8711 12 1 10.8901 2.7710 3.2516 13 6 10.6955 1.6082 5.0531 14 7 10.1237 0.5303 5.5261 15 14 12.1421 2.3707 5.9561 16 1 12.4445 1.5716 7.1706 17 1 13.3298 2.3861 5.0647 18 1 11.8018 3.7612 6.3511 19 6 8.5095 2.1105 2.1292 20 9 9.4459 2.3670 1.1899 21 6 7.2049 1.9365 1.7658 22 6 3.7374 1.2214 3.1998 23 7 2.6551 1.1334 2.4749 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 4.8876 1.7385 0.1561 30 1 5.8408 1.3861 4.8348 31 1 8.1692 1.6840 5.5050 32 1 9.4296 0.0854 5.0149 33 1 6.9213 2.0042 0.7259 34 1 3.7927 1.1089 4.2725 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222391149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:13 Heat of formation + Delta-G solvation = 57.051698 kcal Electronic energy + Delta-G solvation = -19255.297930 eV Core-core repulsion = 16069.034849 eV Total energy + Delta-G solvation = -3186.263080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.34055 -40.70050 -37.59491 -35.47181 -34.18918 -31.65498 -30.72554 -29.37815 -28.37071 -26.43204 -24.64400 -21.91737 -21.66789 -20.54202 -19.79473 -19.52578 -18.12393 -17.06798 -15.51186 -15.31441 -15.07160 -14.96659 -14.77673 -14.17014 -14.06748 -13.68900 -13.26362 -13.21979 -12.71383 -12.69508 -12.35031 -12.06961 -11.64331 -11.47562 -11.25349 -11.01674 -10.93522 -10.46518 -10.27881 -9.98614 -9.83510 -9.62566 -9.18878 -9.10656 -8.58709 -7.73048 -7.40197 -7.05675 -4.49633 1.81650 2.00637 2.48437 2.67351 2.91605 3.07843 3.12094 3.30886 3.59603 3.91807 4.48912 4.51685 4.67101 4.89765 5.16673 5.28068 5.30800 5.31474 5.60038 5.69625 5.88810 6.00150 6.13542 6.23639 6.27972 6.31626 6.38484 6.75835 6.91933 6.97573 7.23940 7.30321 7.48903 7.59820 7.69208 7.78611 7.90552 8.09596 8.10562 8.54185 8.67209 9.86174 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.041035 B = 0.003705 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.176861 B = 7555.842910 C = 8042.115451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.165 4.165 3 C 0.166 3.834 4 N -0.374 5.374 5 C 0.018 3.982 6 C -0.134 4.134 7 C -0.139 4.139 8 C -0.069 4.069 9 C -0.204 4.204 10 C 0.072 3.928 11 C -0.499 4.499 12 H 0.083 0.917 13 C 0.038 3.962 14 N -0.780 5.780 15 Si 1.067 2.933 16 H -0.272 1.272 17 H -0.274 1.274 18 H -0.272 1.272 19 C -0.032 4.032 20 F -0.164 7.164 21 C -0.097 4.097 22 C 0.045 3.955 23 N -0.301 5.301 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.168 0.832 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.302 0.698 33 H 0.100 0.900 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 0.311 -6.504 12.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.044 3.956 4 N -0.158 5.158 5 C -0.126 4.126 6 C -0.145 4.145 7 C -0.142 4.142 8 C -0.088 4.088 9 C -0.224 4.224 10 C 0.068 3.932 11 C -0.526 4.526 12 H 0.101 0.899 13 C -0.185 4.185 14 N -0.402 5.402 15 Si 0.889 3.111 16 H -0.196 1.196 17 H -0.199 1.199 18 H -0.197 1.197 19 C -0.052 4.052 20 F -0.143 7.143 21 C -0.116 4.116 22 C -0.141 4.141 23 N -0.122 5.122 24 H 0.120 0.880 25 H 0.117 0.883 26 H 0.131 0.869 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.185 0.815 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.363 -0.066 -5.269 12.526 hybrid contribution 0.048 0.240 -1.695 1.713 sum -11.316 0.173 -6.964 13.288 Atomic orbital electron populations 1.23857 0.95581 1.02200 0.98908 1.23011 0.96243 0.98081 1.01092 1.20665 0.91915 0.96648 0.86330 1.48152 1.05704 1.56491 1.05437 1.22686 0.84420 1.05934 0.99561 1.19234 0.94088 1.10140 0.91023 1.17078 0.88816 1.15623 0.92681 1.20367 0.95597 0.98808 0.94036 1.20646 0.92006 1.11301 0.98423 1.17707 0.94396 0.91629 0.89460 1.20568 0.95717 1.28681 1.07615 0.89939 1.27153 1.02299 0.94081 0.94972 1.70478 1.19175 1.11702 1.38844 0.83609 0.74129 0.76724 0.76603 1.19626 1.19891 1.19726 1.17308 0.85667 1.16358 0.85911 1.91277 1.65641 1.93024 1.64355 1.20196 0.91571 1.02007 0.97831 1.23905 0.89742 1.00542 0.99936 1.76993 1.23934 1.24402 0.86891 0.87981 0.88299 0.86926 0.89862 0.88121 0.81461 0.88425 0.86889 0.88441 0.88231 0.80365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 14.32 29.02 0.42 -1.01 16 2 C -0.17 -1.67 9.69 -36.02 -0.35 -2.02 16 3 C 0.17 1.74 6.93 -5.19 -0.04 1.70 16 4 N -0.37 -5.61 3.65 -61.93 -0.23 -5.84 16 5 C 0.02 0.29 10.88 -16.44 -0.18 0.11 16 6 C -0.13 -2.50 6.08 -104.96 -0.64 -3.14 16 7 C -0.14 -2.98 5.90 -104.64 -0.62 -3.59 16 8 C -0.07 -1.51 9.51 -39.65 -0.38 -1.89 16 9 C -0.20 -4.97 7.92 -39.30 -0.31 -5.28 16 10 C 0.07 1.87 5.30 -106.73 -0.57 1.31 16 11 C -0.50 -13.09 8.68 -37.92 -0.33 -13.42 16 12 H 0.08 2.16 7.80 -52.49 -0.41 1.75 16 13 C 0.04 0.95 4.90 -17.33 -0.08 0.86 16 14 N -0.78 -19.87 12.31 55.55 0.68 -19.19 16 15 Si 1.07 20.82 30.01 -169.99 -5.10 15.72 16 16 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 19 C -0.03 -0.81 7.26 -39.08 -0.28 -1.10 16 20 F -0.16 -4.11 16.70 2.25 0.04 -4.07 16 21 C -0.10 -2.14 9.47 -39.62 -0.38 -2.52 16 22 C 0.04 0.78 11.42 -17.01 -0.19 0.59 16 23 N -0.30 -5.14 12.33 30.84 0.38 -4.76 16 24 H 0.10 0.75 8.06 -52.48 -0.42 0.33 16 25 H 0.10 0.74 7.84 -52.49 -0.41 0.33 16 26 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 28 H 0.10 0.80 8.06 -51.93 -0.42 0.38 16 29 H 0.17 2.27 7.30 -52.48 -0.38 1.88 16 30 H 0.10 1.86 7.03 -52.48 -0.37 1.49 16 31 H 0.11 2.79 6.52 -52.49 -0.34 2.45 16 32 H 0.30 7.88 6.79 -40.82 -0.28 7.60 16 33 H 0.10 1.94 7.01 -52.49 -0.37 1.57 16 34 H 0.18 2.72 7.33 -52.48 -0.38 2.33 16 LS Contribution 304.15 15.07 4.58 4.58 Total: -1.00 -28.97 304.15 -6.97 -35.94 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -3.41 Total: 7.02 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -3.92 Total: -29.41 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.84 Total: -29.79 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.04 Total: -4.07 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.10 Total: 15.72 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.97 -6.97 -35.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222391149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.991 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds