Wall clock time and date at job start Mon Mar 30 2020 01:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50710 * 119.99912 * 2 1 4 4 N 1.46500 * 109.46912 * 124.99512 * 3 2 1 5 5 C 1.34705 * 125.81298 * 124.99741 * 4 3 2 6 6 C 1.37826 * 107.39632 * 180.02562 * 5 4 3 7 7 C 1.48021 * 126.36597 * 180.02562 * 6 5 4 8 8 C 1.40032 * 119.86126 * 180.02562 * 7 6 5 9 9 C 1.36187 * 120.18019 * 179.97438 * 8 7 6 10 10 C 1.40936 * 119.90102 * 0.02562 * 9 8 7 11 11 C 1.40950 * 120.13704 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00141 * 205.36239 * 11 10 9 13 13 C 1.39928 * 119.99894 * 25.36763 * 11 10 9 14 14 N 1.30869 * 120.00315 * 26.60218 * 13 11 10 15 15 Si 1.86800 * 120.00071 * 206.60173 * 13 11 10 16 16 H 1.48502 * 109.47324 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47509 * 299.99900 * 15 13 11 18 18 H 1.48502 * 109.47250 * 60.00007 * 15 13 11 19 19 C 1.41184 * 119.72918 * 0.26078 * 10 9 8 20 20 F 1.35097 * 120.09452 * 179.74765 * 19 10 9 21 21 C 1.36543 * 119.81178 * 359.48061 * 19 10 9 22 22 C 1.41081 * 107.27109 * 0.26549 * 6 5 4 23 23 N 1.30560 * 108.12244 * 359.55686 * 22 6 5 24 24 H 1.08004 * 119.99979 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.00361 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00260 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46767 * 4.99414 * 3 2 1 28 28 H 1.08999 * 109.46809 * 244.99710 * 3 2 1 29 29 H 1.08004 * 126.30238 * 0.02562 * 5 4 3 30 30 H 1.08003 * 119.91023 * 359.97438 * 8 7 6 31 31 H 1.07997 * 120.04862 * 180.02562 * 9 8 7 32 32 H 0.96998 * 119.99623 * 5.88430 * 14 13 11 33 33 H 1.08000 * 119.94815 * 180.25967 * 21 19 10 34 34 H 1.08003 * 125.93971 * 179.73095 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 4.3206 1.5513 1.0560 6 6 4.8215 1.4930 2.3387 7 6 6.2351 1.6756 2.7381 8 6 6.5951 1.5869 4.0884 9 6 7.8938 1.7533 4.4630 10 6 8.8779 2.0159 3.4889 11 6 10.2235 2.1895 3.8711 12 1 10.8901 2.7710 3.2516 13 6 10.6955 1.6082 5.0531 14 7 10.1237 0.5303 5.5261 15 14 12.1421 2.3707 5.9561 16 1 12.4445 1.5716 7.1706 17 1 13.3298 2.3861 5.0647 18 1 11.8018 3.7612 6.3511 19 6 8.5095 2.1105 2.1292 20 9 9.4459 2.3670 1.1899 21 6 7.2049 1.9365 1.7658 22 6 3.7374 1.2214 3.1998 23 7 2.6551 1.1334 2.4749 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 4.8876 1.7385 0.1561 30 1 5.8408 1.3861 4.8348 31 1 8.1692 1.6840 5.5050 32 1 9.4296 0.0854 5.0149 33 1 6.9213 2.0042 0.7259 34 1 3.7927 1.1089 4.2725 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222391149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:13 Heat of formation + Delta-G solvation = 42.570933 kcal Electronic energy + Delta-G solvation = -19255.925863 eV Core-core repulsion = 16069.034849 eV Total energy + Delta-G solvation = -3186.891013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.28433 -41.99512 -39.38763 -36.47814 -35.84194 -32.83010 -32.28853 -31.17082 -29.91720 -27.66226 -26.21075 -23.55818 -23.28539 -21.69306 -21.23705 -20.62802 -19.97118 -18.43709 -17.08862 -16.79703 -16.60264 -16.18038 -16.14256 -16.03943 -15.62232 -14.99220 -14.82898 -14.53929 -14.20459 -14.15034 -13.93278 -13.36265 -13.09008 -12.98676 -12.68590 -12.57638 -12.24329 -11.96185 -11.76900 -11.65625 -11.39066 -10.96738 -10.57329 -10.34141 -10.20741 -9.58154 -9.26499 -8.70417 -6.41786 0.43954 0.79973 1.00596 1.10676 1.50756 1.55815 1.81073 1.90414 2.04133 2.30855 2.72097 3.45581 3.60399 3.85627 3.90436 3.97762 4.07004 4.23546 4.26293 4.45385 4.58067 4.62572 4.69700 4.80907 4.94567 4.98825 5.11219 5.36717 5.46759 5.58461 5.64781 5.68713 5.74478 5.85216 5.98280 6.04535 6.17706 6.25003 6.66451 6.78117 6.80366 7.94772 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.041035 B = 0.003705 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.176861 B = 7555.842910 C = 8042.115451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.188 4.188 3 C 0.155 3.845 4 N -0.365 5.365 5 C 0.045 3.955 6 C -0.181 4.181 7 C -0.111 4.111 8 C -0.076 4.076 9 C -0.210 4.210 10 C 0.042 3.958 11 C -0.544 4.544 12 H 0.068 0.932 13 C 0.008 3.992 14 N -0.801 5.801 15 Si 1.116 2.884 16 H -0.266 1.266 17 H -0.261 1.261 18 H -0.262 1.262 19 C -0.059 4.059 20 F -0.171 7.171 21 C -0.101 4.101 22 C 0.042 3.958 23 N -0.317 5.317 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.130 0.870 29 H 0.198 0.802 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.286 0.714 33 H 0.130 0.870 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.326 0.603 -7.703 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.207 4.207 3 C 0.036 3.964 4 N -0.147 5.147 5 C -0.101 4.101 6 C -0.192 4.192 7 C -0.113 4.113 8 C -0.095 4.095 9 C -0.230 4.230 10 C 0.039 3.961 11 C -0.572 4.572 12 H 0.086 0.914 13 C -0.209 4.209 14 N -0.423 5.423 15 Si 0.932 3.068 16 H -0.190 1.190 17 H -0.185 1.185 18 H -0.186 1.186 19 C -0.079 4.079 20 F -0.150 7.150 21 C -0.120 4.120 22 C -0.143 4.143 23 N -0.139 5.139 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.148 0.852 29 H 0.214 0.786 30 H 0.143 0.857 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.148 0.852 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.780 0.219 -6.495 15.236 hybrid contribution 0.344 0.116 -1.570 1.612 sum -13.436 0.334 -8.065 15.675 Atomic orbital electron populations 1.24099 0.95181 1.03419 0.96280 1.22938 0.96787 0.97507 1.03476 1.21133 0.92072 0.97424 0.85793 1.48614 1.06033 1.54227 1.05813 1.23144 0.85012 1.02368 0.99625 1.19155 0.92895 1.14350 0.92774 1.17406 0.90283 1.11520 0.92131 1.20687 0.95207 0.98234 0.95369 1.20644 0.92887 1.11752 0.97701 1.18030 0.94983 0.92632 0.90477 1.20634 0.96148 1.31044 1.09354 0.91417 1.28464 1.03929 0.93420 0.95128 1.70589 1.20037 1.12663 1.39053 0.83021 0.71551 0.76354 0.75831 1.18973 1.18538 1.18632 1.17653 0.86816 1.17740 0.85710 1.91242 1.66152 1.93222 1.64377 1.20494 0.90451 1.01374 0.99690 1.24139 0.89388 0.99979 1.00769 1.76986 1.23924 1.25009 0.87976 0.86914 0.86986 0.87956 0.88328 0.85206 0.78559 0.85672 0.88028 0.90133 0.85178 0.79109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 14.32 67.79 0.97 -1.10 16 2 C -0.19 -3.21 9.69 25.66 0.25 -2.96 16 3 C 0.15 2.63 6.93 85.64 0.59 3.22 16 4 N -0.37 -9.59 3.65 -349.85 -1.28 -10.86 16 5 C 0.05 1.28 10.88 84.15 0.92 2.19 16 6 C -0.18 -6.26 6.08 -20.08 -0.12 -6.39 16 7 C -0.11 -4.58 5.90 -19.87 -0.12 -4.69 16 8 C -0.08 -3.31 9.51 22.23 0.21 -3.10 16 9 C -0.21 -10.54 7.92 22.45 0.18 -10.36 16 10 C 0.04 2.29 5.30 -21.23 -0.11 2.17 16 11 C -0.54 -30.02 8.68 23.34 0.20 -29.82 16 12 H 0.07 3.77 7.80 -2.91 -0.02 3.75 16 13 C 0.01 0.42 4.90 85.25 0.42 0.84 16 14 N -0.80 -42.49 12.31 21.83 0.27 -42.23 16 15 Si 1.12 42.89 30.01 68.60 2.06 44.95 16 16 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 18 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 19 C -0.06 -3.02 7.26 22.60 0.16 -2.86 16 20 F -0.17 -8.78 16.70 44.97 0.75 -8.02 16 21 C -0.10 -4.37 9.47 22.25 0.21 -4.16 16 22 C 0.04 1.38 11.42 85.58 0.98 2.35 16 23 N -0.32 -9.94 12.33 -56.36 -0.70 -10.63 16 24 H 0.11 1.29 8.06 -2.91 -0.02 1.27 16 25 H 0.11 1.23 7.84 -2.91 -0.02 1.21 16 26 H 0.10 1.95 8.06 -2.91 -0.02 1.93 16 27 H 0.10 1.43 7.79 -2.39 -0.02 1.41 16 28 H 0.13 1.44 8.06 -2.39 -0.02 1.42 16 29 H 0.20 4.33 7.30 -2.91 -0.02 4.31 16 30 H 0.13 4.64 7.03 -2.91 -0.02 4.61 16 31 H 0.10 5.24 6.52 -2.91 -0.02 5.22 16 32 H 0.29 15.75 6.79 -92.71 -0.63 15.12 16 33 H 0.13 4.71 7.01 -2.91 -0.02 4.69 16 34 H 0.19 5.42 7.33 -2.91 -0.02 5.39 16 Total: -1.00 -64.82 304.15 7.10 -57.72 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 1.26 Total: 23.74 kcal Atomic # 6 Polarization: -59.40 SS G_CDS: 4.74 Total: -54.66 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -1.70 Total: -63.72 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 0.75 Total: -8.02 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.06 Total: 44.95 kcal Total: -64.82 7.10 -57.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222391149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.294 kcal (2) G-P(sol) polarization free energy of solvation -64.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds