Wall clock time and date at job start Mon Mar 30 2020 01:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50695 * 120.00304 * 2 1 4 4 N 1.46499 * 109.47482 * 125.00238 * 3 2 1 5 5 C 1.34715 * 125.82070 * 125.00158 * 4 3 2 6 6 C 1.37854 * 107.39184 * 179.73596 * 5 4 3 7 7 C 1.47995 * 126.37000 * 179.97438 * 6 5 4 8 8 C 1.39931 * 119.89365 * 309.72878 * 7 6 5 9 9 C 1.36227 * 120.14108 * 179.71574 * 8 7 6 10 10 C 1.40973 * 119.92252 * 0.53265 * 9 8 7 11 11 C 1.41014 * 120.10198 * 179.76509 * 10 9 8 12 12 H 1.07993 * 120.00448 * 24.69464 * 11 10 9 13 13 C 1.39933 * 119.99856 * 204.69311 * 11 10 9 14 14 N 1.30852 * 120.00009 * 17.98293 * 13 11 10 15 15 Si 1.86796 * 120.00079 * 197.98748 * 13 11 10 16 16 H 1.48498 * 109.47671 * 89.99911 * 15 13 11 17 17 H 1.48508 * 109.47174 * 209.99957 * 15 13 11 18 18 H 1.48504 * 109.47151 * 329.99600 * 15 13 11 19 19 C 1.40884 * 119.78958 * 359.73821 * 10 9 8 20 20 C 1.36439 * 119.86182 * 0.02562 * 19 10 9 21 21 F 1.35097 * 119.96431 * 179.97438 * 20 19 10 22 22 C 1.41099 * 107.26879 * 359.97438 * 6 5 4 23 23 N 1.30550 * 108.11802 * 0.02562 * 22 6 5 24 24 H 1.08001 * 119.99898 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00295 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99898 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46974 * 4.99803 * 3 2 1 28 28 H 1.09003 * 109.47271 * 245.00081 * 3 2 1 29 29 H 1.08001 * 126.30379 * 359.75542 * 5 4 3 30 30 H 1.08007 * 119.92751 * 359.97438 * 8 7 6 31 31 H 1.07998 * 120.04138 * 180.27195 * 9 8 7 32 32 H 0.97004 * 120.00064 * 180.02562 * 14 13 11 33 33 H 1.08005 * 120.06873 * 180.02562 * 19 10 9 34 34 H 1.07992 * 125.94176 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3208 1.5512 1.0559 6 6 4.8207 1.4993 2.3395 7 6 6.2338 1.6832 2.7391 8 6 7.2415 0.9603 2.0911 9 6 8.5444 1.1299 2.4509 10 6 8.8770 2.0273 3.4860 11 6 10.2240 2.2021 3.8649 12 1 11.0148 1.9930 3.1598 13 6 10.5360 2.6466 5.1546 14 7 9.6434 2.5663 6.1080 15 14 12.2266 3.3546 5.5150 16 1 12.2090 4.8211 5.2824 17 1 12.5860 3.0821 6.9299 18 1 13.2289 2.7233 4.6193 19 6 7.8594 2.7493 4.1402 20 6 6.5578 2.5763 3.7696 21 9 5.5803 3.2672 4.3959 22 6 3.7347 1.2383 3.2017 23 7 2.6543 1.1402 2.4755 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 4.8884 1.7344 0.1555 30 1 6.9862 0.2695 1.3011 31 1 9.3213 0.5744 1.9467 32 1 9.8596 2.8747 7.0020 33 1 8.1091 3.4384 4.9336 34 1 3.7880 1.1373 4.2756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222391664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:15 Heat of formation + Delta-G solvation = 64.282895 kcal Electronic energy + Delta-G solvation = -19358.715175 eV Core-core repulsion = 16172.765663 eV Total energy + Delta-G solvation = -3185.949512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.55729 -40.55445 -37.35051 -35.39687 -33.86094 -31.61304 -30.76783 -29.09577 -28.46068 -26.43479 -24.74352 -21.71652 -21.23199 -20.60298 -19.84952 -19.48660 -17.62834 -16.82550 -15.77921 -15.33289 -15.05055 -14.79174 -14.52551 -14.38396 -14.26103 -13.60997 -13.10777 -13.03984 -12.62910 -12.50543 -12.18303 -11.95070 -11.70159 -11.46207 -11.20326 -11.11832 -10.89223 -10.41990 -10.17053 -9.96427 -9.80268 -9.61638 -9.30265 -8.99345 -8.17148 -7.47033 -7.11122 -6.87773 -4.48643 1.87620 2.21641 2.57901 2.91370 2.99730 3.00494 3.03892 3.04582 3.52003 3.82944 4.46834 4.57340 4.72869 4.94741 5.28232 5.33739 5.45066 5.53488 5.64347 5.73162 6.08082 6.14687 6.30040 6.32510 6.43567 6.44945 6.72113 6.90462 7.00201 7.07887 7.19469 7.40174 7.55142 7.71172 7.82504 7.89841 8.15934 8.18932 8.47455 8.71757 8.78997 10.02008 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.049728 B = 0.003710 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.932273 B = 7545.498334 C = 7898.972029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.165 4.165 3 C 0.166 3.834 4 N -0.377 5.377 5 C 0.031 3.969 6 C -0.140 4.140 7 C -0.189 4.189 8 C -0.050 4.050 9 C -0.234 4.234 10 C 0.132 3.868 11 C -0.450 4.450 12 H 0.084 0.916 13 C 0.074 3.926 14 N -0.779 5.779 15 Si 0.912 3.088 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.208 4.208 20 C 0.128 3.872 21 F -0.163 7.163 22 C 0.056 3.944 23 N -0.305 5.305 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.170 0.830 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.285 0.715 33 H 0.128 0.872 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 -1.695 -8.672 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.045 3.955 4 N -0.160 5.160 5 C -0.113 4.113 6 C -0.151 4.151 7 C -0.193 4.193 8 C -0.069 4.069 9 C -0.254 4.254 10 C 0.129 3.871 11 C -0.479 4.479 12 H 0.102 0.898 13 C -0.146 4.146 14 N -0.403 5.403 15 Si 0.736 3.264 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.228 4.228 20 C 0.108 3.892 21 F -0.142 7.142 22 C -0.130 4.130 23 N -0.127 5.127 24 H 0.117 0.883 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.187 0.813 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.146 0.854 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.176 -1.830 -8.497 13.382 hybrid contribution 1.481 0.485 0.414 1.612 sum -8.695 -1.344 -8.082 11.947 Atomic orbital electron populations 1.23851 0.95604 1.02168 0.99010 1.23009 0.96233 0.98094 1.01003 1.20648 0.91931 0.96602 0.86348 1.48191 1.05665 1.56691 1.05491 1.22832 0.84260 1.04536 0.99665 1.19114 0.94099 1.10886 0.90964 1.17312 0.89788 1.07684 1.04480 1.20149 0.92319 0.96941 0.97451 1.20696 0.94854 1.04574 1.05235 1.17404 0.92962 0.87527 0.89242 1.19614 0.92944 1.38039 0.97280 0.89792 1.26022 0.99530 0.93180 0.95877 1.69836 1.35665 1.32450 1.02325 0.86243 0.81601 0.80212 0.78344 1.19074 1.20149 1.18419 1.20935 0.89987 1.05718 1.06132 1.17384 0.85005 0.93393 0.93381 1.91331 1.62930 1.78342 1.81639 1.24029 0.89879 0.99089 0.99973 1.77009 1.23889 1.25042 0.86715 0.88316 0.88023 0.86953 0.89916 0.88146 0.81321 0.88658 0.88380 0.90411 0.85436 0.80530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 14.32 29.02 0.42 -1.08 16 2 C -0.16 -1.71 9.70 -36.03 -0.35 -2.06 16 3 C 0.17 1.81 6.93 -5.20 -0.04 1.77 16 4 N -0.38 -5.91 3.65 -61.93 -0.23 -6.14 16 5 C 0.03 0.52 11.39 -16.43 -0.19 0.34 16 6 C -0.14 -2.78 5.39 -104.95 -0.57 -3.34 16 7 C -0.19 -4.24 5.79 -104.54 -0.61 -4.85 16 8 C -0.05 -1.08 9.64 -39.67 -0.38 -1.46 16 9 C -0.23 -5.43 9.73 -39.27 -0.38 -5.81 16 10 C 0.13 3.37 5.57 -106.81 -0.60 2.78 16 11 C -0.45 -11.35 9.03 -37.90 -0.34 -11.69 16 12 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 13 C 0.07 1.78 5.13 -17.33 -0.09 1.69 16 14 N -0.78 -19.55 10.96 55.55 0.61 -18.94 16 15 Si 0.91 17.83 29.60 -169.99 -5.03 12.80 16 16 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 17 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 19 C -0.21 -5.38 8.60 -39.23 -0.34 -5.72 16 20 C 0.13 3.12 7.20 -39.51 -0.28 2.84 16 21 F -0.16 -3.91 16.35 2.25 0.04 -3.87 16 22 C 0.06 1.09 11.42 -17.01 -0.19 0.90 16 23 N -0.31 -5.60 12.34 30.84 0.38 -5.22 16 24 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 25 H 0.10 0.78 8.06 -52.49 -0.42 0.35 16 26 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 27 H 0.08 0.83 7.79 -51.93 -0.40 0.42 16 28 H 0.10 0.82 8.06 -51.93 -0.42 0.40 16 29 H 0.17 2.30 8.06 -52.49 -0.42 1.87 16 30 H 0.10 1.79 8.06 -52.48 -0.42 1.36 16 31 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 33 H 0.13 3.44 6.16 -52.48 -0.32 3.12 16 34 H 0.18 3.25 8.06 -52.49 -0.42 2.82 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -28.59 308.45 -7.16 -35.76 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -3.64 Total: 6.66 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -3.93 Total: -25.70 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.76 Total: -30.29 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.59 -7.16 -35.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222391664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.038 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds