Wall clock time and date at job start Mon Mar 30 2020 01:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50695 * 120.00304 * 2 1 4 4 N 1.46499 * 109.47482 * 125.00238 * 3 2 1 5 5 C 1.34715 * 125.82070 * 125.00158 * 4 3 2 6 6 C 1.37854 * 107.39184 * 179.73596 * 5 4 3 7 7 C 1.47995 * 126.37000 * 179.97438 * 6 5 4 8 8 C 1.39931 * 119.89365 * 309.72878 * 7 6 5 9 9 C 1.36227 * 120.14108 * 179.71574 * 8 7 6 10 10 C 1.40973 * 119.92252 * 0.53265 * 9 8 7 11 11 C 1.41014 * 120.10198 * 179.76509 * 10 9 8 12 12 H 1.07993 * 120.00448 * 24.69464 * 11 10 9 13 13 C 1.39933 * 119.99856 * 204.69311 * 11 10 9 14 14 N 1.30852 * 120.00009 * 17.98293 * 13 11 10 15 15 Si 1.86796 * 120.00079 * 197.98748 * 13 11 10 16 16 H 1.48498 * 109.47671 * 89.99911 * 15 13 11 17 17 H 1.48508 * 109.47174 * 209.99957 * 15 13 11 18 18 H 1.48504 * 109.47151 * 329.99600 * 15 13 11 19 19 C 1.40884 * 119.78958 * 359.73821 * 10 9 8 20 20 C 1.36439 * 119.86182 * 0.02562 * 19 10 9 21 21 F 1.35097 * 119.96431 * 179.97438 * 20 19 10 22 22 C 1.41099 * 107.26879 * 359.97438 * 6 5 4 23 23 N 1.30550 * 108.11802 * 0.02562 * 22 6 5 24 24 H 1.08001 * 119.99898 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00295 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99898 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46974 * 4.99803 * 3 2 1 28 28 H 1.09003 * 109.47271 * 245.00081 * 3 2 1 29 29 H 1.08001 * 126.30379 * 359.75542 * 5 4 3 30 30 H 1.08007 * 119.92751 * 359.97438 * 8 7 6 31 31 H 1.07998 * 120.04138 * 180.27195 * 9 8 7 32 32 H 0.97004 * 120.00064 * 180.02562 * 14 13 11 33 33 H 1.08005 * 120.06873 * 180.02562 * 19 10 9 34 34 H 1.07992 * 125.94176 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3208 1.5512 1.0559 6 6 4.8207 1.4993 2.3395 7 6 6.2338 1.6832 2.7391 8 6 7.2415 0.9603 2.0911 9 6 8.5444 1.1299 2.4509 10 6 8.8770 2.0273 3.4860 11 6 10.2240 2.2021 3.8649 12 1 11.0148 1.9930 3.1598 13 6 10.5360 2.6466 5.1546 14 7 9.6434 2.5663 6.1080 15 14 12.2266 3.3546 5.5150 16 1 12.2090 4.8211 5.2824 17 1 12.5860 3.0821 6.9299 18 1 13.2289 2.7233 4.6193 19 6 7.8594 2.7493 4.1402 20 6 6.5578 2.5763 3.7696 21 9 5.5803 3.2672 4.3959 22 6 3.7347 1.2383 3.2017 23 7 2.6543 1.1402 2.4755 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 4.8884 1.7344 0.1555 30 1 6.9862 0.2695 1.3011 31 1 9.3213 0.5744 1.9467 32 1 9.8596 2.8747 7.0020 33 1 8.1091 3.4384 4.9336 34 1 3.7880 1.1373 4.2756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222391664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:15 Heat of formation + Delta-G solvation = 50.288819 kcal Electronic energy + Delta-G solvation = -19359.322004 eV Core-core repulsion = 16172.765663 eV Total energy + Delta-G solvation = -3186.556341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.45860 -41.90412 -39.14998 -36.35445 -35.58954 -32.88453 -32.29999 -30.94219 -30.02244 -27.70362 -26.28186 -23.39590 -22.88096 -21.89555 -21.17788 -20.65438 -19.46044 -18.14654 -17.60077 -16.64648 -16.41964 -16.26109 -16.10715 -15.96854 -15.89445 -14.87484 -14.75444 -14.32867 -14.10204 -13.97991 -13.64289 -13.47228 -13.22580 -12.83930 -12.71818 -12.55274 -12.22909 -12.05195 -11.84445 -11.63965 -11.38555 -11.06779 -10.54109 -10.27580 -9.77534 -9.31954 -8.81173 -8.64135 -6.36596 0.65442 1.01650 1.04603 1.10471 1.40271 1.48538 1.54499 1.93612 1.97280 2.19806 2.69083 3.59820 3.68412 3.89730 3.91122 4.10399 4.11865 4.30419 4.44080 4.59420 4.61829 4.79239 4.90222 4.96233 4.99443 5.09317 5.22963 5.30535 5.56588 5.61464 5.69677 5.73208 5.88329 6.02614 6.04399 6.22951 6.31040 6.61265 6.80450 6.85917 6.93696 8.26331 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.049728 B = 0.003710 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.932273 B = 7545.498334 C = 7898.972029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.186 4.186 3 C 0.155 3.845 4 N -0.365 5.365 5 C 0.059 3.941 6 C -0.185 4.185 7 C -0.173 4.173 8 C -0.046 4.046 9 C -0.238 4.238 10 C 0.103 3.897 11 C -0.483 4.483 12 H 0.090 0.910 13 C 0.032 3.968 14 N -0.818 5.818 15 Si 0.986 3.014 16 H -0.264 1.264 17 H -0.270 1.270 18 H -0.251 1.251 19 C -0.231 4.231 20 C 0.108 3.892 21 F -0.167 7.167 22 C 0.041 3.959 23 N -0.320 5.320 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.135 0.865 29 H 0.207 0.793 30 H 0.132 0.868 31 H 0.115 0.885 32 H 0.290 0.710 33 H 0.105 0.895 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 -2.121 -11.034 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.205 4.205 3 C 0.036 3.964 4 N -0.147 5.147 5 C -0.087 4.087 6 C -0.196 4.196 7 C -0.176 4.176 8 C -0.065 4.065 9 C -0.258 4.258 10 C 0.100 3.900 11 C -0.512 4.512 12 H 0.108 0.892 13 C -0.184 4.184 14 N -0.443 5.443 15 Si 0.806 3.194 16 H -0.188 1.188 17 H -0.194 1.194 18 H -0.175 1.175 19 C -0.252 4.252 20 C 0.089 3.911 21 F -0.146 7.146 22 C -0.144 4.144 23 N -0.142 5.142 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.123 0.877 27 H 0.113 0.887 28 H 0.153 0.847 29 H 0.223 0.777 30 H 0.150 0.850 31 H 0.133 0.867 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.875 -2.270 -10.873 15.545 hybrid contribution 1.409 0.562 0.994 1.814 sum -9.466 -1.708 -9.878 13.788 Atomic orbital electron populations 1.24092 0.95265 1.03348 0.96531 1.22948 0.96743 0.97566 1.03230 1.21147 0.92075 0.97366 0.85814 1.48651 1.06187 1.54252 1.05609 1.23275 0.84701 1.01261 0.99512 1.19086 0.92983 1.14797 0.92761 1.17577 0.91649 1.05646 1.02770 1.20494 0.91340 0.96773 0.97865 1.20959 0.96241 1.03986 1.04568 1.17739 0.93332 0.88476 0.90435 1.19898 0.93114 1.39910 0.98237 0.89207 1.26914 1.03486 0.92787 0.95230 1.69906 1.37888 1.33529 1.02928 0.85135 0.76635 0.79186 0.78404 1.18838 1.19449 1.17452 1.20854 0.91094 1.06568 1.06674 1.17645 0.84575 0.94382 0.94538 1.91307 1.62854 1.78535 1.81877 1.24007 0.90285 0.99957 1.00138 1.76962 1.23568 1.25559 0.88138 0.87185 0.86867 0.87679 0.88663 0.84742 0.77680 0.85019 0.86742 0.89886 0.87698 0.81138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 14.32 67.79 0.97 -1.29 16 2 C -0.19 -3.31 9.70 25.65 0.25 -3.06 16 3 C 0.15 2.79 6.93 85.63 0.59 3.38 16 4 N -0.37 -10.33 3.65 -349.84 -1.28 -11.61 16 5 C 0.06 1.78 11.39 84.16 0.96 2.74 16 6 C -0.18 -7.11 5.39 -20.08 -0.11 -7.22 16 7 C -0.17 -7.68 5.79 -19.81 -0.11 -7.80 16 8 C -0.05 -1.93 9.64 22.21 0.21 -1.71 16 9 C -0.24 -10.96 9.73 22.47 0.22 -10.74 16 10 C 0.10 5.42 5.57 -21.28 -0.12 5.30 16 11 C -0.48 -24.98 9.03 23.36 0.21 -24.77 16 12 H 0.09 4.35 7.91 -2.91 -0.02 4.32 16 13 C 0.03 1.58 5.13 85.25 0.44 2.02 16 14 N -0.82 -42.72 10.96 21.83 0.24 -42.48 16 15 Si 0.99 36.97 29.60 68.60 2.03 39.00 16 16 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 17 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 18 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 19 C -0.23 -12.55 8.60 22.50 0.19 -12.36 16 20 C 0.11 5.43 7.20 22.32 0.16 5.59 16 21 F -0.17 -8.28 16.35 44.97 0.74 -7.55 16 22 C 0.04 1.58 11.42 85.59 0.98 2.55 16 23 N -0.32 -11.28 12.34 -56.36 -0.70 -11.97 16 24 H 0.11 1.36 7.84 -2.91 -0.02 1.33 16 25 H 0.11 1.39 8.06 -2.91 -0.02 1.36 16 26 H 0.11 2.03 8.06 -2.91 -0.02 2.00 16 27 H 0.10 1.53 7.79 -2.39 -0.02 1.51 16 28 H 0.13 1.52 8.06 -2.39 -0.02 1.50 16 29 H 0.21 4.53 8.06 -2.91 -0.02 4.51 16 30 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 32 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 33 H 0.11 6.05 6.16 -2.91 -0.02 6.03 16 34 H 0.17 6.49 8.06 -2.91 -0.02 6.46 16 Total: -1.00 -63.97 308.45 6.98 -56.99 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 1.11 Total: 24.98 kcal Atomic # 6 Polarization: -52.20 SS G_CDS: 4.84 Total: -47.36 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -1.73 Total: -66.06 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 0.74 Total: -7.55 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Total: -63.97 6.98 -56.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222391664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.275 kcal (2) G-P(sol) polarization free energy of solvation -63.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds