Wall clock time and date at job start Mon Mar 30 2020 01:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00193 * 2 1 4 4 N 1.46505 * 109.47364 * 124.99169 * 3 2 1 5 5 C 1.34845 * 125.89229 * 124.99658 * 4 3 2 6 6 C 1.36425 * 107.60732 * 179.76523 * 5 4 3 7 7 C 1.48491 * 126.22335 * 180.28263 * 6 5 4 8 8 C 1.38600 * 120.01258 * 129.72107 * 7 6 5 9 9 C 1.40563 * 119.66243 * 179.81682 * 8 7 6 10 10 C 1.41342 * 120.15607 * 180.18341 * 9 8 7 11 11 H 1.07995 * 119.99596 * 204.70961 * 10 9 8 12 12 C 1.39895 * 119.99675 * 24.71341 * 10 9 8 13 13 N 1.30860 * 120.00283 * 17.77162 * 12 10 9 14 14 Si 1.86801 * 119.99461 * 197.77305 * 12 10 9 15 15 H 1.48498 * 109.47128 * 89.99976 * 14 12 10 16 16 H 1.48505 * 109.47127 * 210.00059 * 14 12 10 17 17 H 1.48502 * 109.47210 * 330.00110 * 14 12 10 18 18 C 1.40843 * 119.68318 * 0.46029 * 9 8 7 19 19 C 1.37570 * 120.00713 * 359.77134 * 18 9 8 20 20 C 1.38745 * 120.34458 * 359.97438 * 19 18 9 21 21 F 1.35100 * 119.83909 * 179.97438 * 20 19 18 22 22 C 1.40846 * 107.55843 * 0.24509 * 6 5 4 23 23 N 1.30669 * 108.09872 * 359.97438 * 22 6 5 24 24 H 1.07994 * 119.99967 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99733 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99849 * 179.97438 * 2 1 3 27 27 H 1.09011 * 109.46895 * 4.99927 * 3 2 1 28 28 H 1.08994 * 109.47304 * 244.99638 * 3 2 1 29 29 H 1.08007 * 126.19538 * 0.03716 * 5 4 3 30 30 H 1.08002 * 120.16674 * 0.03210 * 8 7 6 31 31 H 0.96999 * 119.99613 * 179.97438 * 13 12 10 32 32 H 1.07997 * 119.99742 * 179.74969 * 18 9 8 33 33 H 1.08009 * 119.82476 * 179.97438 * 19 18 9 34 34 H 1.07995 * 125.94568 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3320 1.1316 5 6 4.3222 1.5513 1.0579 6 6 4.8200 1.5001 2.3270 7 6 6.2386 1.6916 2.7216 8 6 6.5623 2.5790 3.7359 9 6 7.9073 2.7517 4.1061 10 6 8.2488 3.6510 5.1417 11 1 9.2353 4.0894 5.1725 12 6 7.3090 3.9730 6.1266 13 7 6.2613 3.2096 6.3059 14 14 7.5496 5.4927 7.1859 15 1 6.8984 6.6579 6.5351 16 1 6.9402 5.2670 8.5212 17 1 9.0016 5.7614 7.3435 18 6 8.9134 2.0288 3.4362 19 6 8.5775 1.1551 2.4281 20 6 7.2497 0.9801 2.0656 21 9 6.9315 0.1198 1.0738 22 6 3.7434 1.2333 3.1952 23 7 2.6574 1.1314 2.4758 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6214 1.4025 -0.9313 29 1 4.8888 1.7385 0.1576 30 1 5.7848 3.1323 4.2417 31 1 5.6099 3.4328 6.9891 32 1 9.9487 2.1607 3.7138 33 1 9.3516 0.6026 1.9160 34 1 3.8049 1.1315 4.2686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222400270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:17 Heat of formation + Delta-G solvation = 65.315473 kcal Electronic energy + Delta-G solvation = -19609.340972 eV Core-core repulsion = 16423.436236 eV Total energy + Delta-G solvation = -3185.904736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.42404 -40.63109 -37.28288 -35.35706 -33.63462 -31.75326 -30.90691 -29.34161 -28.10204 -25.80290 -25.02784 -21.83606 -21.28381 -20.67189 -19.84457 -19.40855 -17.42088 -16.53874 -15.98934 -15.33566 -15.28241 -14.96002 -14.50010 -14.17562 -13.96482 -13.64143 -13.08162 -12.93523 -12.59498 -12.41847 -12.03522 -11.87172 -11.79533 -11.44935 -11.23437 -11.09621 -10.80968 -10.46809 -10.33422 -9.93486 -9.74423 -9.49181 -9.15749 -8.96565 -8.32009 -7.38380 -7.13174 -6.79824 -4.40423 1.90723 2.23619 2.60183 2.78740 3.01814 3.05455 3.08453 3.10586 3.53774 3.89154 4.50366 4.60393 4.76121 4.98617 5.29434 5.36850 5.48757 5.56210 5.68177 5.82693 5.97847 6.09042 6.25874 6.36515 6.47294 6.47882 6.70667 6.93612 7.08601 7.12401 7.18044 7.41157 7.45525 7.69361 7.85114 7.96321 8.15190 8.19171 8.51170 8.79288 8.83922 10.11363 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.005062 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.563906 B = 5530.477927 C = 6645.544120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.164 4.164 3 C 0.166 3.834 4 N -0.380 5.380 5 C 0.056 3.944 6 C -0.167 4.167 7 C -0.026 4.026 8 C -0.127 4.127 9 C 0.102 3.898 10 C -0.458 4.458 11 H 0.080 0.920 12 C 0.076 3.924 13 N -0.789 5.789 14 Si 0.909 3.091 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.262 1.262 18 C -0.206 4.206 19 C -0.118 4.118 20 C -0.037 4.037 21 F -0.172 7.172 22 C 0.068 3.932 23 N -0.304 5.304 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.169 0.831 30 H 0.129 0.871 31 H 0.283 0.717 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 -1.437 -8.153 10.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.045 3.955 4 N -0.163 5.163 5 C -0.088 4.088 6 C -0.178 4.178 7 C -0.028 4.028 8 C -0.146 4.146 9 C 0.100 3.900 10 C -0.487 4.487 11 H 0.098 0.902 12 C -0.142 4.142 13 N -0.414 5.414 14 Si 0.733 3.267 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.186 1.186 18 C -0.226 4.226 19 C -0.137 4.137 20 C -0.057 4.057 21 F -0.151 7.151 22 C -0.118 4.118 23 N -0.125 5.125 24 H 0.117 0.883 25 H 0.120 0.880 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.186 0.814 30 H 0.146 0.854 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.561 -1.695 -8.138 11.933 hybrid contribution 0.964 0.539 0.378 1.168 sum -7.597 -1.156 -7.760 10.921 Atomic orbital electron populations 1.23847 0.95570 1.02157 0.99057 1.23014 0.96232 0.98106 1.00950 1.20665 0.91897 0.96652 0.86334 1.48333 1.05636 1.56591 1.05690 1.22489 0.84298 1.02427 0.99621 1.18976 0.94482 1.12820 0.91514 1.17814 0.87997 0.98881 0.98109 1.21293 0.97392 0.99584 0.96360 1.17583 0.91031 0.90247 0.91150 1.19564 0.99576 1.22575 1.06982 0.90150 1.25905 0.94206 0.96779 0.97337 1.69807 1.09834 1.33433 1.28278 0.86297 0.79836 0.81747 0.78802 1.19243 1.20264 1.18586 1.20857 0.98498 1.01704 1.01529 1.20430 0.93253 1.00695 0.99364 1.17276 0.93022 1.00059 0.95346 1.91262 1.93865 1.69512 1.60458 1.24076 0.89248 0.98219 1.00269 1.77143 1.23704 1.24945 0.86659 0.88308 0.88021 0.86923 0.89824 0.88122 0.81355 0.85353 0.90643 0.88096 0.88186 0.79779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 14.32 29.01 0.42 -1.17 16 2 C -0.16 -1.83 9.69 -36.03 -0.35 -2.18 16 3 C 0.17 1.93 6.94 -5.19 -0.04 1.90 16 4 N -0.38 -6.28 3.66 -62.27 -0.23 -6.50 16 5 C 0.06 1.01 10.77 -16.88 -0.18 0.83 16 6 C -0.17 -3.50 5.36 -105.34 -0.57 -4.06 16 7 C -0.03 -0.60 5.75 -104.89 -0.60 -1.21 16 8 C -0.13 -3.17 8.35 -38.57 -0.32 -3.49 16 9 C 0.10 2.61 5.57 -106.86 -0.60 2.02 16 10 C -0.46 -11.57 9.04 -37.78 -0.34 -11.91 16 11 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 12 C 0.08 1.83 5.14 -17.35 -0.09 1.74 16 13 N -0.79 -19.43 10.96 55.54 0.61 -18.82 16 14 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 15 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 16 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 17 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 18 C -0.21 -4.86 9.78 -38.84 -0.38 -5.24 16 19 C -0.12 -2.66 9.99 -39.64 -0.40 -3.06 16 20 C -0.04 -0.86 7.26 -38.75 -0.28 -1.14 16 21 F -0.17 -3.81 16.33 2.25 0.04 -3.77 16 22 C 0.07 1.37 11.93 -17.06 -0.20 1.17 16 23 N -0.30 -5.76 12.36 30.80 0.38 -5.38 16 24 H 0.10 0.83 7.84 -52.49 -0.41 0.42 16 25 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 26 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 27 H 0.08 0.88 7.79 -51.92 -0.40 0.47 16 28 H 0.10 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.17 2.63 8.06 -52.48 -0.42 2.21 16 30 H 0.13 3.32 6.16 -52.49 -0.32 2.99 16 31 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 32 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 33 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 34 H 0.19 3.53 8.06 -52.49 -0.42 3.11 16 LS Contribution 308.55 15.07 4.65 4.65 Total: -1.00 -28.23 308.55 -7.16 -35.38 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.64 Total: 7.28 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -3.93 Total: -25.81 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.76 Total: -30.71 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.23 -7.16 -35.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222400270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.698 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds