Wall clock time and date at job start Mon Mar 30 2020 01:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00193 * 2 1 4 4 N 1.46505 * 109.47364 * 124.99169 * 3 2 1 5 5 C 1.34845 * 125.89229 * 124.99658 * 4 3 2 6 6 C 1.36425 * 107.60732 * 179.76523 * 5 4 3 7 7 C 1.48491 * 126.22335 * 180.28263 * 6 5 4 8 8 C 1.38600 * 120.01258 * 129.72107 * 7 6 5 9 9 C 1.40563 * 119.66243 * 179.81682 * 8 7 6 10 10 C 1.41342 * 120.15607 * 180.18341 * 9 8 7 11 11 H 1.07995 * 119.99596 * 204.70961 * 10 9 8 12 12 C 1.39895 * 119.99675 * 24.71341 * 10 9 8 13 13 N 1.30860 * 120.00283 * 17.77162 * 12 10 9 14 14 Si 1.86801 * 119.99461 * 197.77305 * 12 10 9 15 15 H 1.48498 * 109.47128 * 89.99976 * 14 12 10 16 16 H 1.48505 * 109.47127 * 210.00059 * 14 12 10 17 17 H 1.48502 * 109.47210 * 330.00110 * 14 12 10 18 18 C 1.40843 * 119.68318 * 0.46029 * 9 8 7 19 19 C 1.37570 * 120.00713 * 359.77134 * 18 9 8 20 20 C 1.38745 * 120.34458 * 359.97438 * 19 18 9 21 21 F 1.35100 * 119.83909 * 179.97438 * 20 19 18 22 22 C 1.40846 * 107.55843 * 0.24509 * 6 5 4 23 23 N 1.30669 * 108.09872 * 359.97438 * 22 6 5 24 24 H 1.07994 * 119.99967 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99733 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99849 * 179.97438 * 2 1 3 27 27 H 1.09011 * 109.46895 * 4.99927 * 3 2 1 28 28 H 1.08994 * 109.47304 * 244.99638 * 3 2 1 29 29 H 1.08007 * 126.19538 * 0.03716 * 5 4 3 30 30 H 1.08002 * 120.16674 * 0.03210 * 8 7 6 31 31 H 0.96999 * 119.99613 * 179.97438 * 13 12 10 32 32 H 1.07997 * 119.99742 * 179.74969 * 18 9 8 33 33 H 1.08009 * 119.82476 * 179.97438 * 19 18 9 34 34 H 1.07995 * 125.94568 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3320 1.1316 5 6 4.3222 1.5513 1.0579 6 6 4.8200 1.5001 2.3270 7 6 6.2386 1.6916 2.7216 8 6 6.5623 2.5790 3.7359 9 6 7.9073 2.7517 4.1061 10 6 8.2488 3.6510 5.1417 11 1 9.2353 4.0894 5.1725 12 6 7.3090 3.9730 6.1266 13 7 6.2613 3.2096 6.3059 14 14 7.5496 5.4927 7.1859 15 1 6.8984 6.6579 6.5351 16 1 6.9402 5.2670 8.5212 17 1 9.0016 5.7614 7.3435 18 6 8.9134 2.0288 3.4362 19 6 8.5775 1.1551 2.4281 20 6 7.2497 0.9801 2.0656 21 9 6.9315 0.1198 1.0738 22 6 3.7434 1.2333 3.1952 23 7 2.6574 1.1314 2.4758 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6214 1.4025 -0.9313 29 1 4.8888 1.7385 0.1576 30 1 5.7848 3.1323 4.2417 31 1 5.6099 3.4328 6.9891 32 1 9.9487 2.1607 3.7138 33 1 9.3516 0.6026 1.9160 34 1 3.8049 1.1315 4.2686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222400270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:17 Heat of formation + Delta-G solvation = 52.021162 kcal Electronic energy + Delta-G solvation = -19609.917457 eV Core-core repulsion = 16423.436236 eV Total energy + Delta-G solvation = -3186.481221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.21031 -42.06212 -39.08062 -36.35465 -35.43685 -33.15369 -32.37553 -31.18704 -29.59998 -27.00684 -26.86835 -23.54389 -22.92450 -21.99214 -21.23472 -20.66556 -19.14458 -18.10730 -17.68438 -17.04914 -16.39197 -16.24601 -16.04729 -15.91345 -15.58387 -14.94770 -14.64835 -14.20947 -14.15086 -13.92283 -13.68562 -13.58726 -13.06450 -12.99425 -12.75586 -12.44660 -12.35082 -12.16496 -11.87081 -11.67197 -11.27440 -10.96052 -10.57346 -10.33557 -9.93151 -9.23789 -8.84631 -8.57298 -6.30982 0.62459 0.90930 1.01732 1.07675 1.42703 1.50270 1.55365 1.88019 1.92716 2.23282 2.70044 3.55419 3.66909 3.86750 3.97953 4.02568 4.07878 4.26347 4.33716 4.43941 4.57390 4.77277 4.90854 4.93216 4.95689 5.09659 5.27164 5.34466 5.51901 5.58449 5.63720 5.71466 5.86036 5.98896 6.08345 6.13266 6.32398 6.64362 6.72093 6.92228 6.97779 8.33275 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.005062 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.563906 B = 5530.477927 C = 6645.544120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.189 4.189 3 C 0.154 3.846 4 N -0.366 5.366 5 C 0.073 3.927 6 C -0.208 4.208 7 C -0.021 4.021 8 C -0.149 4.149 9 C 0.077 3.923 10 C -0.489 4.489 11 H 0.082 0.918 12 C 0.038 3.962 13 N -0.816 5.816 14 Si 0.980 3.020 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.256 1.256 18 C -0.218 4.218 19 C -0.115 4.115 20 C -0.048 4.048 21 F -0.165 7.165 22 C 0.054 3.946 23 N -0.313 5.313 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.131 0.869 29 H 0.195 0.805 30 H 0.112 0.888 31 H 0.289 0.711 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.741 -1.104 -9.319 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.208 4.208 3 C 0.035 3.965 4 N -0.148 5.148 5 C -0.074 4.074 6 C -0.219 4.219 7 C -0.023 4.023 8 C -0.168 4.168 9 C 0.075 3.925 10 C -0.518 4.518 11 H 0.100 0.900 12 C -0.178 4.178 13 N -0.442 5.442 14 Si 0.801 3.199 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.180 1.180 18 C -0.237 4.237 19 C -0.134 4.134 20 C -0.068 4.068 21 F -0.145 7.145 22 C -0.132 4.132 23 N -0.134 5.134 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.149 0.851 29 H 0.212 0.788 30 H 0.130 0.870 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.340 -1.382 -9.323 13.269 hybrid contribution 1.070 0.349 0.602 1.276 sum -8.270 -1.034 -8.721 12.063 Atomic orbital electron populations 1.24103 0.95065 1.03489 0.96118 1.22929 0.96840 0.97403 1.03609 1.21175 0.92010 0.97613 0.85656 1.48773 1.05920 1.54235 1.05885 1.22779 0.84981 1.00323 0.99314 1.19022 0.93684 1.16043 0.93172 1.17986 0.89592 0.97637 0.97102 1.21179 0.96977 1.00966 0.97710 1.17945 0.91792 0.90942 0.91839 1.19835 1.00346 1.23739 1.07895 0.89957 1.26717 0.93583 0.99257 0.98254 1.69867 1.10532 1.34812 1.28955 0.85225 0.79931 0.77650 0.77093 1.18950 1.19460 1.17990 1.21053 0.98863 1.01930 1.01886 1.20711 0.93802 1.00098 0.98758 1.17426 0.93381 1.00247 0.95726 1.91267 1.93864 1.69239 1.60083 1.24021 0.89571 0.99199 1.00361 1.77077 1.23263 1.25132 0.87960 0.86941 0.86742 0.87977 0.88190 0.85093 0.78824 0.87046 0.89990 0.86742 0.85315 0.80368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 14.32 67.78 0.97 -1.44 16 2 C -0.19 -3.79 9.69 25.64 0.25 -3.54 16 3 C 0.15 3.17 6.94 85.63 0.59 3.77 16 4 N -0.37 -11.48 3.66 -350.93 -1.29 -12.77 16 5 C 0.07 2.52 10.77 83.81 0.90 3.42 16 6 C -0.21 -8.77 5.36 -20.33 -0.11 -8.88 16 7 C -0.02 -1.00 5.75 -20.04 -0.12 -1.11 16 8 C -0.15 -7.70 8.35 22.92 0.19 -7.50 16 9 C 0.08 4.05 5.57 -21.31 -0.12 3.93 16 10 C -0.49 -25.30 9.04 23.44 0.21 -25.09 16 11 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 12 C 0.04 1.85 5.14 85.24 0.44 2.28 16 13 N -0.82 -41.33 10.96 21.82 0.24 -41.09 16 14 Si 0.98 37.02 29.59 68.60 2.03 39.05 16 15 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 16 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 17 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 18 C -0.22 -10.33 9.78 22.75 0.22 -10.11 16 19 C -0.11 -5.08 9.99 22.23 0.22 -4.86 16 20 C -0.05 -2.20 7.26 22.81 0.17 -2.03 16 21 F -0.17 -7.11 16.33 44.97 0.73 -6.38 16 22 C 0.05 2.22 11.93 85.50 1.02 3.24 16 23 N -0.31 -11.72 12.36 -56.46 -0.70 -12.42 16 24 H 0.11 1.50 7.84 -2.91 -0.02 1.48 16 25 H 0.11 1.54 8.06 -2.91 -0.02 1.52 16 26 H 0.10 2.26 8.06 -2.91 -0.02 2.24 16 27 H 0.10 1.77 7.79 -2.38 -0.02 1.76 16 28 H 0.13 1.89 8.07 -2.39 -0.02 1.87 16 29 H 0.19 5.57 8.06 -2.91 -0.02 5.55 16 30 H 0.11 6.06 6.16 -2.91 -0.02 6.04 16 31 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 32 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 33 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.18 7.25 8.06 -2.91 -0.02 7.23 16 Total: -1.00 -61.31 308.55 6.97 -54.34 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 1.11 Total: 27.19 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 4.84 Total: -47.93 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -1.74 Total: -66.28 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.73 Total: -6.38 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Total: -61.31 6.97 -54.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222400270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.358 kcal (2) G-P(sol) polarization free energy of solvation -61.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds