Wall clock time and date at job start Mon Mar 30 2020 01:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 119.99967 * 2 1 4 4 N 1.46507 * 109.46906 * 124.99969 * 3 2 1 5 5 C 1.34709 * 125.80651 * 125.00007 * 4 3 2 6 6 C 1.37918 * 107.37744 * 179.73280 * 5 4 3 7 7 C 1.47901 * 126.37072 * 179.97438 * 6 5 4 8 8 C 1.39150 * 120.25313 * 309.72396 * 7 6 5 9 9 C 1.37983 * 120.12951 * 179.76583 * 8 7 6 10 10 C 1.39201 * 120.65500 * 0.51791 * 9 8 7 11 11 F 1.35100 * 119.75229 * 179.76417 * 10 9 8 12 12 C 1.37592 * 120.50494 * 359.73703 * 10 9 8 13 13 C 1.40730 * 119.84520 * 0.02562 * 12 10 9 14 14 C 1.40886 * 120.31724 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99762 * 149.45139 * 14 13 12 16 16 C 1.39994 * 119.99661 * 329.44938 * 14 13 12 17 17 N 1.30827 * 119.99814 * 162.35751 * 16 14 13 18 18 Si 1.86794 * 120.00218 * 342.35459 * 16 14 13 19 19 H 1.48508 * 109.47085 * 95.38101 * 18 16 14 20 20 H 1.48506 * 109.47329 * 215.37760 * 18 16 14 21 21 H 1.48495 * 109.47548 * 335.37974 * 18 16 14 22 22 C 1.41124 * 107.25289 * 359.97438 * 6 5 4 23 23 N 1.30541 * 108.11862 * 0.02562 * 22 6 5 24 24 H 1.07999 * 119.99921 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00061 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99659 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47305 * 5.00442 * 3 2 1 28 28 H 1.08999 * 109.47078 * 244.99964 * 3 2 1 29 29 H 1.08003 * 126.31524 * 359.73748 * 5 4 3 30 30 H 1.08000 * 119.93357 * 0.02562 * 8 7 6 31 31 H 1.08003 * 119.67164 * 180.23133 * 9 8 7 32 32 H 1.08004 * 120.07902 * 180.02562 * 12 10 9 33 33 H 0.97003 * 120.00253 * 180.02562 * 17 16 14 34 34 H 1.07999 * 125.93965 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3207 1.5512 1.0558 6 6 4.8207 1.4993 2.3401 7 6 6.2329 1.6830 2.7396 8 6 7.2410 0.9679 2.1004 9 6 8.5581 1.1449 2.4719 10 6 8.8948 2.0286 3.4933 11 9 10.1898 2.1843 3.8454 12 6 7.9189 2.7454 4.1467 13 6 6.5692 2.5850 3.7817 14 6 5.5619 3.3143 4.4437 15 1 4.6622 3.5940 3.9158 16 6 5.7273 3.6764 5.7859 17 7 4.9881 4.6235 6.3037 18 14 7.0032 2.8071 6.8374 19 1 8.2599 3.5984 6.8459 20 1 6.4929 2.6737 8.2256 21 1 7.2712 1.4585 6.2768 22 6 3.7342 1.2383 3.2020 23 7 2.6541 1.1402 2.4755 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1315 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 4.8884 1.7341 0.1554 30 1 6.9925 0.2761 1.3092 31 1 9.3350 0.5888 1.9683 32 1 8.1879 3.4295 4.9380 33 1 5.1029 4.8747 7.2336 34 1 3.7873 1.1364 4.2759 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222400487.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:08 Heat of formation + Delta-G solvation = 65.955045 kcal Electronic energy + Delta-G solvation = -19741.719027 eV Core-core repulsion = 16555.842024 eV Total energy + Delta-G solvation = -3185.877002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.91608 -40.44481 -37.55989 -35.23361 -33.70307 -31.58007 -30.64776 -30.56572 -27.83936 -25.89987 -25.12034 -22.04351 -21.18708 -20.64491 -19.72966 -19.31971 -17.71454 -16.79905 -16.16583 -15.20701 -15.05344 -14.75639 -14.72393 -14.55112 -14.47138 -13.51436 -13.26427 -12.96059 -12.88581 -12.38699 -12.14962 -12.07540 -11.83098 -11.56898 -11.32967 -10.95081 -10.88976 -10.55027 -10.15252 -9.86089 -9.78366 -9.62998 -9.24027 -8.80489 -8.11225 -7.80889 -7.05824 -7.05211 -4.57790 1.97163 2.16531 2.50973 2.59811 3.09247 3.14633 3.16133 3.28463 3.63757 3.92426 4.35884 4.67744 4.83431 5.04056 5.21529 5.41620 5.43885 5.44798 5.67264 5.72933 5.93209 6.06338 6.27477 6.34321 6.41272 6.47969 6.53890 6.59017 6.80115 7.00139 7.21413 7.36698 7.37956 7.49572 7.63169 7.75073 8.01890 8.26618 8.37905 8.54214 8.68217 9.95128 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019810 B = 0.005819 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.086614 B = 4810.370420 C = 5927.041799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.163 4.163 3 C 0.167 3.833 4 N -0.380 5.380 5 C 0.028 3.972 6 C -0.136 4.136 7 C -0.123 4.123 8 C -0.046 4.046 9 C -0.279 4.279 10 C 0.130 3.870 11 F -0.165 7.165 12 C -0.273 4.273 13 C 0.121 3.879 14 C -0.424 4.424 15 H 0.100 0.900 16 C 0.085 3.915 17 N -0.795 5.795 18 Si 0.905 3.095 19 H -0.269 1.269 20 H -0.288 1.288 21 H -0.241 1.241 22 C 0.078 3.922 23 N -0.309 5.309 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.166 0.834 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.288 0.712 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 -5.944 -8.875 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.182 4.182 3 C 0.045 3.955 4 N -0.163 5.163 5 C -0.116 4.116 6 C -0.147 4.147 7 C -0.125 4.125 8 C -0.065 4.065 9 C -0.299 4.299 10 C 0.111 3.889 11 F -0.144 7.144 12 C -0.293 4.293 13 C 0.118 3.882 14 C -0.452 4.452 15 H 0.117 0.883 16 C -0.136 4.136 17 N -0.417 5.417 18 Si 0.731 3.269 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.164 1.164 22 C -0.108 4.108 23 N -0.130 5.130 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.184 0.816 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.377 -5.938 -8.779 11.884 hybrid contribution 1.698 0.037 0.634 1.813 sum -3.678 -5.901 -8.145 10.709 Atomic orbital electron populations 1.23848 0.95641 1.02120 0.99151 1.23008 0.96205 0.98095 1.00885 1.20610 0.91963 0.96518 0.86375 1.48153 1.05498 1.57047 1.05583 1.22806 0.84532 1.04817 0.99493 1.18993 0.94145 1.10976 0.90602 1.17950 0.89137 1.01896 1.03560 1.20462 0.91456 0.97167 0.97393 1.20177 0.96756 1.08003 1.04951 1.17606 0.76739 0.98034 0.96556 1.91355 1.36457 1.94936 1.91605 1.20925 0.92951 1.07927 1.07457 1.17395 0.90817 0.89039 0.90982 1.19447 1.04086 1.26162 0.95482 0.88258 1.26230 0.95534 0.92694 0.99118 1.69690 1.35106 1.21152 1.15773 0.86391 0.79937 0.82874 0.77746 1.19468 1.21487 1.16442 1.24056 0.89271 0.97359 1.00108 1.77050 1.23974 1.25473 0.86508 0.88119 0.88307 0.87050 0.89975 0.88342 0.81634 0.87893 0.87749 0.87082 0.90178 0.80043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 14.32 29.01 0.42 -1.21 16 2 C -0.16 -1.80 9.70 -36.03 -0.35 -2.14 16 3 C 0.17 1.95 6.93 -5.19 -0.04 1.92 16 4 N -0.38 -6.24 3.65 -61.91 -0.23 -6.46 16 5 C 0.03 0.47 11.40 -16.41 -0.19 0.28 16 6 C -0.14 -2.75 4.97 -104.96 -0.52 -3.27 16 7 C -0.12 -2.69 5.82 -104.22 -0.61 -3.30 16 8 C -0.05 -0.92 9.69 -39.34 -0.38 -1.30 16 9 C -0.28 -5.77 10.01 -39.32 -0.39 -6.16 16 10 C 0.13 2.95 7.28 -39.46 -0.29 2.66 16 11 F -0.16 -3.62 17.26 2.25 0.04 -3.58 16 12 C -0.27 -6.57 7.11 -38.88 -0.28 -6.85 16 13 C 0.12 2.94 5.11 -106.57 -0.54 2.39 16 14 C -0.42 -10.80 8.13 -37.92 -0.31 -11.11 16 15 H 0.10 2.70 7.08 -52.49 -0.37 2.33 16 16 C 0.09 2.13 5.41 -17.32 -0.09 2.04 16 17 N -0.79 -20.34 13.93 55.55 0.77 -19.57 16 18 Si 0.90 20.31 24.52 -169.99 -4.17 16.14 16 19 H -0.27 -6.02 6.72 56.52 0.38 -5.64 16 20 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.24 -5.56 6.85 56.52 0.39 -5.17 16 22 C 0.08 1.60 10.46 -17.01 -0.18 1.43 16 23 N -0.31 -6.01 12.34 30.84 0.38 -5.63 16 24 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 25 H 0.10 0.87 7.84 -52.48 -0.41 0.46 16 26 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 27 H 0.08 0.91 7.79 -51.93 -0.40 0.51 16 28 H 0.10 0.86 8.06 -51.93 -0.42 0.45 16 29 H 0.17 2.28 8.06 -52.48 -0.42 1.86 16 30 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 32 H 0.11 2.71 4.78 -52.48 -0.25 2.46 16 33 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 34 H 0.18 3.69 7.94 -52.49 -0.42 3.27 16 LS Contribution 300.79 15.07 4.53 4.53 Total: -1.00 -28.07 300.79 -5.98 -34.05 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -3.56 Total: 5.14 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -3.75 Total: -24.62 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.93 Total: -31.66 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.04 Total: -3.58 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.17 Total: 16.14 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.07 -5.98 -34.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222400487.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.003 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds