Wall clock time and date at job start Mon Mar 30 2020 01:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 119.99967 * 2 1 4 4 N 1.46507 * 109.46906 * 124.99969 * 3 2 1 5 5 C 1.34709 * 125.80651 * 125.00007 * 4 3 2 6 6 C 1.37918 * 107.37744 * 179.73280 * 5 4 3 7 7 C 1.47901 * 126.37072 * 179.97438 * 6 5 4 8 8 C 1.39150 * 120.25313 * 309.72396 * 7 6 5 9 9 C 1.37983 * 120.12951 * 179.76583 * 8 7 6 10 10 C 1.39201 * 120.65500 * 0.51791 * 9 8 7 11 11 F 1.35100 * 119.75229 * 179.76417 * 10 9 8 12 12 C 1.37592 * 120.50494 * 359.73703 * 10 9 8 13 13 C 1.40730 * 119.84520 * 0.02562 * 12 10 9 14 14 C 1.40886 * 120.31724 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99762 * 149.45139 * 14 13 12 16 16 C 1.39994 * 119.99661 * 329.44938 * 14 13 12 17 17 N 1.30827 * 119.99814 * 162.35751 * 16 14 13 18 18 Si 1.86794 * 120.00218 * 342.35459 * 16 14 13 19 19 H 1.48508 * 109.47085 * 95.38101 * 18 16 14 20 20 H 1.48506 * 109.47329 * 215.37760 * 18 16 14 21 21 H 1.48495 * 109.47548 * 335.37974 * 18 16 14 22 22 C 1.41124 * 107.25289 * 359.97438 * 6 5 4 23 23 N 1.30541 * 108.11862 * 0.02562 * 22 6 5 24 24 H 1.07999 * 119.99921 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00061 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99659 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47305 * 5.00442 * 3 2 1 28 28 H 1.08999 * 109.47078 * 244.99964 * 3 2 1 29 29 H 1.08003 * 126.31524 * 359.73748 * 5 4 3 30 30 H 1.08000 * 119.93357 * 0.02562 * 8 7 6 31 31 H 1.08003 * 119.67164 * 180.23133 * 9 8 7 32 32 H 1.08004 * 120.07902 * 180.02562 * 12 10 9 33 33 H 0.97003 * 120.00253 * 180.02562 * 17 16 14 34 34 H 1.07999 * 125.93965 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3207 1.5512 1.0558 6 6 4.8207 1.4993 2.3401 7 6 6.2329 1.6830 2.7396 8 6 7.2410 0.9679 2.1004 9 6 8.5581 1.1449 2.4719 10 6 8.8948 2.0286 3.4933 11 9 10.1898 2.1843 3.8454 12 6 7.9189 2.7454 4.1467 13 6 6.5692 2.5850 3.7817 14 6 5.5619 3.3143 4.4437 15 1 4.6622 3.5940 3.9158 16 6 5.7273 3.6764 5.7859 17 7 4.9881 4.6235 6.3037 18 14 7.0032 2.8071 6.8374 19 1 8.2599 3.5984 6.8459 20 1 6.4929 2.6737 8.2256 21 1 7.2712 1.4585 6.2768 22 6 3.7342 1.2383 3.2020 23 7 2.6541 1.1402 2.4755 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1315 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 4.8884 1.7341 0.1554 30 1 6.9925 0.2761 1.3092 31 1 9.3350 0.5888 1.9683 32 1 8.1879 3.4295 4.9380 33 1 5.1029 4.8747 7.2336 34 1 3.7873 1.1364 4.2759 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222400487.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:08 Heat of formation + Delta-G solvation = 50.970860 kcal Electronic energy + Delta-G solvation = -19742.368790 eV Core-core repulsion = 16555.842024 eV Total energy + Delta-G solvation = -3186.526765 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.65672 -41.85232 -39.27645 -36.20133 -35.53254 -32.89712 -32.34056 -32.12643 -29.31413 -27.32339 -26.66932 -23.68822 -22.86399 -21.86709 -21.02405 -20.58749 -19.54607 -18.24627 -17.83647 -16.71447 -16.51905 -16.29233 -16.19484 -16.03716 -15.94035 -15.00150 -14.80874 -14.57436 -14.11052 -13.88166 -13.82425 -13.48758 -13.31522 -13.13324 -12.70411 -12.55472 -12.32489 -12.12859 -11.87878 -11.60163 -11.37322 -11.04949 -10.49855 -10.17536 -9.69746 -9.57491 -8.92030 -8.65329 -6.46177 0.48463 0.75366 1.09089 1.16724 1.26653 1.35486 1.46143 2.01881 2.06749 2.10627 2.56124 3.41589 3.70886 3.74719 3.95069 4.15682 4.18706 4.25385 4.36378 4.44522 4.63287 4.68930 4.77779 4.91292 4.95699 4.99684 5.20443 5.25898 5.57354 5.61295 5.62901 5.66633 5.72086 5.93960 5.95656 6.22840 6.33180 6.39806 6.72739 6.80802 6.94400 8.14668 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019810 B = 0.005819 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.086614 B = 4810.370420 C = 5927.041799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.182 4.182 3 C 0.155 3.845 4 N -0.369 5.369 5 C 0.055 3.945 6 C -0.176 4.176 7 C -0.115 4.115 8 C -0.043 4.043 9 C -0.256 4.256 10 C 0.111 3.889 11 F -0.162 7.162 12 C -0.290 4.290 13 C 0.104 3.896 14 C -0.445 4.445 15 H 0.069 0.931 16 C 0.056 3.944 17 N -0.837 5.837 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.252 1.252 22 C 0.060 3.940 23 N -0.330 5.330 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.136 0.864 29 H 0.208 0.792 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.099 0.901 33 H 0.294 0.706 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 -7.636 -11.650 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.201 4.201 3 C 0.036 3.964 4 N -0.151 5.151 5 C -0.092 4.092 6 C -0.188 4.188 7 C -0.118 4.118 8 C -0.061 4.061 9 C -0.276 4.276 10 C 0.092 3.908 11 F -0.141 7.141 12 C -0.310 4.310 13 C 0.101 3.899 14 C -0.474 4.474 15 H 0.087 0.913 16 C -0.160 4.160 17 N -0.462 5.462 18 Si 0.774 3.226 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.176 1.176 22 C -0.125 4.125 23 N -0.152 5.152 24 H 0.132 0.868 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.153 0.847 29 H 0.224 0.776 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.977 -7.636 -11.554 14.716 hybrid contribution 1.521 0.437 1.207 1.990 sum -3.456 -7.199 -10.347 13.070 Atomic orbital electron populations 1.24083 0.95380 1.03224 0.96924 1.22955 0.96656 0.97597 1.02871 1.21099 0.92103 0.97216 0.85951 1.48597 1.06224 1.54711 1.05520 1.23311 0.84784 1.01612 0.99508 1.19035 0.93442 1.14211 0.92087 1.18256 0.90823 1.00511 1.02185 1.20864 0.90526 0.96903 0.97846 1.20646 0.98000 1.05969 1.02971 1.17797 0.76656 0.98930 0.97433 1.91356 1.36044 1.95006 1.91709 1.20957 0.93477 1.08628 1.07937 1.17562 0.90548 0.89685 0.92102 1.19249 1.03720 1.28419 0.96001 0.91333 1.26688 0.96683 0.92969 0.99674 1.69712 1.37155 1.22826 1.16520 0.85712 0.78354 0.81292 0.77260 1.19596 1.20064 1.17587 1.23905 0.90161 0.98612 0.99854 1.76977 1.23777 1.26277 0.88185 0.86790 0.87513 0.87376 0.89314 0.84654 0.77551 0.83822 0.84418 0.88276 0.89554 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 14.32 67.78 0.97 -1.65 16 2 C -0.18 -3.52 9.70 25.64 0.25 -3.27 16 3 C 0.16 3.13 6.93 85.63 0.59 3.72 16 4 N -0.37 -11.22 3.65 -349.78 -1.28 -12.50 16 5 C 0.05 1.68 11.40 84.18 0.96 2.64 16 6 C -0.18 -6.95 4.97 -20.09 -0.10 -7.05 16 7 C -0.12 -4.91 5.82 -19.60 -0.11 -5.02 16 8 C -0.04 -1.56 9.69 22.43 0.22 -1.34 16 9 C -0.26 -9.63 10.01 22.44 0.22 -9.40 16 10 C 0.11 4.86 7.28 22.35 0.16 5.02 16 11 F -0.16 -6.86 17.26 44.97 0.78 -6.08 16 12 C -0.29 -14.02 7.11 22.73 0.16 -13.86 16 13 C 0.10 5.12 5.11 -21.12 -0.11 5.01 16 14 C -0.45 -23.76 8.13 23.34 0.19 -23.57 16 15 H 0.07 3.99 7.08 -2.91 -0.02 3.97 16 16 C 0.06 2.95 5.41 85.27 0.46 3.41 16 17 N -0.84 -45.02 13.93 21.84 0.30 -44.72 16 18 Si 0.95 43.19 24.52 68.60 1.68 44.88 16 19 H -0.27 -12.16 6.72 99.48 0.67 -11.49 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.25 -11.74 6.85 99.48 0.68 -11.06 16 22 C 0.06 2.50 10.46 85.59 0.89 3.39 16 23 N -0.33 -12.73 12.34 -56.34 -0.70 -13.43 16 24 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 25 H 0.11 1.59 7.84 -2.91 -0.02 1.57 16 26 H 0.11 2.16 8.06 -2.91 -0.02 2.14 16 27 H 0.09 1.71 7.79 -2.39 -0.02 1.69 16 28 H 0.14 1.73 8.06 -2.39 -0.02 1.71 16 29 H 0.21 4.55 8.06 -2.91 -0.02 4.53 16 30 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.10 4.95 4.78 -2.91 -0.01 4.93 16 33 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 34 H 0.17 7.19 7.94 -2.91 -0.02 7.17 16 Total: -1.00 -62.82 300.79 6.61 -56.21 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.05 Total: 17.61 kcal Atomic # 6 Polarization: -46.73 SS G_CDS: 4.76 Total: -41.97 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -1.67 Total: -70.65 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.78 Total: -6.08 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.68 Total: 44.88 kcal Total: -62.82 6.61 -56.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222400487.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.183 kcal (2) G-P(sol) polarization free energy of solvation -62.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds