Wall clock time and date at job start Mon Mar 30 2020 01:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99630 * 2 1 4 4 N 1.46509 * 109.46943 * 125.00272 * 3 2 1 5 5 C 1.34823 * 125.89730 * 125.30803 * 4 3 2 6 6 C 1.36427 * 107.61088 * 180.13909 * 5 4 3 7 7 C 1.48489 * 126.22042 * 179.84038 * 6 5 4 8 8 C 1.39667 * 119.98390 * 359.70945 * 7 6 5 9 9 C 1.38624 * 120.35555 * 180.02562 * 8 7 6 10 10 F 1.35098 * 119.83946 * 179.97438 * 9 8 7 11 11 C 1.37940 * 120.32193 * 0.02562 * 9 8 7 12 12 C 1.40715 * 119.95948 * 359.97438 * 11 9 8 13 13 C 1.41424 * 120.17709 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00250 * 154.77030 * 13 12 11 15 15 C 1.39924 * 119.99713 * 334.75859 * 13 12 11 16 16 N 1.30833 * 120.00472 * 342.80923 * 15 13 12 17 17 Si 1.86799 * 119.99869 * 162.79592 * 15 13 12 18 18 H 1.48513 * 109.46676 * 94.96769 * 17 15 13 19 19 H 1.48495 * 109.47466 * 214.96934 * 17 15 13 20 20 H 1.48495 * 109.47258 * 334.97489 * 17 15 13 21 21 C 1.38696 * 119.98042 * 179.71518 * 7 6 5 22 22 C 1.40842 * 107.55393 * 359.57655 * 6 5 4 23 23 N 1.30665 * 108.09891 * 0.26239 * 22 6 5 24 24 H 1.07998 * 120.00092 * 180.02562 * 1 2 3 25 25 H 1.08007 * 120.00120 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.99750 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47796 * 5.00278 * 3 2 1 28 28 H 1.08993 * 109.47275 * 244.99729 * 3 2 1 29 29 H 1.07999 * 126.19288 * 0.02562 * 5 4 3 30 30 H 1.07996 * 119.81690 * 0.28456 * 8 7 6 31 31 H 1.07998 * 120.01995 * 179.97438 * 11 9 8 32 32 H 0.96993 * 120.00298 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.16437 * 0.02562 * 21 7 6 34 34 H 1.08001 * 125.94359 * 180.24202 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3211 1.5572 1.0584 6 6 4.8207 1.4951 2.3264 7 6 6.2406 1.6792 2.7199 8 6 7.2071 1.9377 1.7454 9 6 8.5350 2.1103 2.1042 10 9 9.4614 2.3595 1.1529 11 6 8.9152 2.0279 3.4276 12 6 7.9525 1.7680 4.4204 13 6 8.3373 1.6821 5.7786 14 1 7.6188 1.8899 6.5576 15 6 9.6489 1.3275 6.1130 16 7 10.4193 0.7564 5.2231 17 14 10.3000 1.6698 7.8300 18 1 10.1336 0.4585 8.6731 19 1 11.7399 2.0245 7.7518 20 1 9.5440 2.7982 8.4303 21 6 6.6063 1.5942 4.0551 22 6 3.7438 1.2308 3.1948 23 7 2.6569 1.1345 2.4760 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9354 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 4.8867 1.7498 0.1587 30 1 6.9177 2.0077 0.7073 31 1 9.9511 2.1628 3.7016 32 1 11.3286 0.5109 5.4548 33 1 5.8607 1.3939 4.8103 34 1 3.8059 1.1257 4.2679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222408982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:19 Heat of formation + Delta-G solvation = 62.771868 kcal Electronic energy + Delta-G solvation = -19194.319404 eV Core-core repulsion = 16008.304368 eV Total energy + Delta-G solvation = -3186.015035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.62582 -40.84255 -37.30978 -35.46032 -33.81679 -31.70252 -30.87351 -29.48686 -28.02610 -25.87138 -25.43133 -21.99079 -21.55496 -20.48144 -19.78502 -19.54138 -17.66971 -16.51659 -15.65026 -15.46297 -15.11431 -14.78629 -14.69403 -14.54413 -14.29024 -13.67153 -13.28154 -13.17833 -12.84048 -12.66052 -12.09091 -11.88194 -11.66592 -11.53060 -11.09098 -11.05884 -10.73340 -10.53669 -10.39836 -9.96831 -9.80932 -9.63950 -9.29972 -9.14601 -8.55966 -7.46109 -6.91596 -6.77155 -4.48158 1.80512 2.00971 2.54928 2.68674 2.87355 3.04996 3.06403 3.12304 3.67786 3.88916 4.49284 4.57665 4.65659 4.88712 5.11375 5.27504 5.31093 5.56466 5.57599 5.60161 5.92422 6.12132 6.21440 6.27913 6.32723 6.37858 6.61145 6.86155 6.99145 7.00495 7.18775 7.27194 7.54042 7.67769 7.77911 7.90202 8.01075 8.20768 8.51395 8.78353 8.81024 10.10959 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026952 B = 0.004032 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.649490 B = 6942.906589 C = 7798.018077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.166 4.166 3 C 0.165 3.835 4 N -0.378 5.378 5 C 0.050 3.950 6 C -0.166 4.166 7 C 0.036 3.964 8 C -0.271 4.271 9 C 0.107 3.893 10 F -0.168 7.168 11 C -0.202 4.202 12 C 0.131 3.869 13 C -0.457 4.457 14 H 0.083 0.917 15 C 0.075 3.925 16 N -0.788 5.788 17 Si 0.909 3.091 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.217 4.217 22 C 0.061 3.939 23 N -0.300 5.300 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.172 0.828 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.283 0.717 33 H 0.101 0.899 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.228 0.202 -7.096 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.044 3.956 4 N -0.160 5.160 5 C -0.095 4.095 6 C -0.177 4.177 7 C 0.034 3.966 8 C -0.292 4.292 9 C 0.088 3.912 10 F -0.147 7.147 11 C -0.222 4.222 12 C 0.129 3.871 13 C -0.486 4.486 14 H 0.101 0.899 15 C -0.143 4.143 16 N -0.412 5.412 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.237 4.237 22 C -0.125 4.125 23 N -0.121 5.121 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.131 0.869 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.189 0.811 30 H 0.115 0.885 31 H 0.146 0.854 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.315 -0.095 -7.278 14.305 hybrid contribution 1.521 0.150 0.467 1.598 sum -10.794 0.055 -6.812 12.764 Atomic orbital electron populations 1.23867 0.95578 1.02233 0.98752 1.22998 0.96249 0.98044 1.01217 1.20693 0.91916 0.96765 0.86242 1.48362 1.05778 1.56205 1.05692 1.22519 0.84398 1.02695 0.99870 1.19154 0.94591 1.12478 0.91503 1.17376 0.88010 0.98103 0.93074 1.20122 0.91487 1.19765 0.97779 1.17549 0.85461 1.02390 0.85792 1.91329 1.66295 1.92436 1.64668 1.21304 1.01739 1.09316 0.89876 1.17269 0.90036 0.86782 0.93056 1.19585 0.95666 1.40890 0.92488 0.89877 1.25957 0.96652 0.92204 0.99534 1.69819 1.08424 1.27174 1.35807 0.86275 0.78641 0.79900 0.81832 1.19474 1.19992 1.18270 1.20992 0.96600 1.12628 0.93458 1.24019 0.89437 0.98791 1.00282 1.77157 1.23713 1.24516 0.86701 0.87949 0.88280 0.86865 0.89740 0.88012 0.81072 0.88470 0.85444 0.90624 0.88117 0.79857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 14.32 29.01 0.42 -0.97 16 2 C -0.17 -1.64 9.69 -36.03 -0.35 -1.99 16 3 C 0.16 1.67 6.94 -5.19 -0.04 1.64 16 4 N -0.38 -5.53 3.66 -62.28 -0.23 -5.76 16 5 C 0.05 0.78 10.83 -16.89 -0.18 0.60 16 6 C -0.17 -3.11 6.04 -105.34 -0.64 -3.75 16 7 C 0.04 0.78 5.87 -104.97 -0.62 0.17 16 8 C -0.27 -6.06 9.55 -38.91 -0.37 -6.43 16 9 C 0.11 2.62 7.28 -39.55 -0.29 2.34 16 10 F -0.17 -3.97 17.26 2.25 0.04 -3.93 16 11 C -0.20 -5.29 8.66 -38.76 -0.34 -5.62 16 12 C 0.13 3.40 5.56 -106.87 -0.59 2.81 16 13 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 14 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 15 C 0.08 1.84 5.14 -17.35 -0.09 1.75 16 16 N -0.79 -20.08 10.96 55.55 0.61 -19.47 16 17 Si 0.91 18.15 29.59 -169.99 -5.03 13.11 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 C -0.22 -5.09 9.32 -38.54 -0.36 -5.45 16 22 C 0.06 1.08 11.41 -17.06 -0.19 0.88 16 23 N -0.30 -5.09 12.37 30.80 0.38 -4.70 16 24 H 0.10 0.74 8.06 -52.49 -0.42 0.31 16 25 H 0.10 0.72 7.84 -52.48 -0.41 0.31 16 26 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 28 H 0.10 0.76 8.07 -51.93 -0.42 0.35 16 29 H 0.17 2.24 7.27 -52.49 -0.38 1.86 16 30 H 0.10 1.91 6.99 -52.49 -0.37 1.54 16 31 H 0.13 3.47 6.18 -52.49 -0.32 3.15 16 32 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 33 H 0.10 2.17 7.03 -52.49 -0.37 1.80 16 34 H 0.18 2.87 7.34 -52.49 -0.39 2.49 16 LS Contribution 305.63 15.07 4.61 4.61 Total: -1.00 -29.02 305.63 -7.06 -36.08 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.46 Total: 6.13 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -3.98 Total: -26.05 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.76 Total: -29.94 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.02 -7.06 -36.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222408982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.849 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds