Wall clock time and date at job start Mon Mar 30 2020 01:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99630 * 2 1 4 4 N 1.46509 * 109.46943 * 125.00272 * 3 2 1 5 5 C 1.34823 * 125.89730 * 125.30803 * 4 3 2 6 6 C 1.36427 * 107.61088 * 180.13909 * 5 4 3 7 7 C 1.48489 * 126.22042 * 179.84038 * 6 5 4 8 8 C 1.39667 * 119.98390 * 359.70945 * 7 6 5 9 9 C 1.38624 * 120.35555 * 180.02562 * 8 7 6 10 10 F 1.35098 * 119.83946 * 179.97438 * 9 8 7 11 11 C 1.37940 * 120.32193 * 0.02562 * 9 8 7 12 12 C 1.40715 * 119.95948 * 359.97438 * 11 9 8 13 13 C 1.41424 * 120.17709 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00250 * 154.77030 * 13 12 11 15 15 C 1.39924 * 119.99713 * 334.75859 * 13 12 11 16 16 N 1.30833 * 120.00472 * 342.80923 * 15 13 12 17 17 Si 1.86799 * 119.99869 * 162.79592 * 15 13 12 18 18 H 1.48513 * 109.46676 * 94.96769 * 17 15 13 19 19 H 1.48495 * 109.47466 * 214.96934 * 17 15 13 20 20 H 1.48495 * 109.47258 * 334.97489 * 17 15 13 21 21 C 1.38696 * 119.98042 * 179.71518 * 7 6 5 22 22 C 1.40842 * 107.55393 * 359.57655 * 6 5 4 23 23 N 1.30665 * 108.09891 * 0.26239 * 22 6 5 24 24 H 1.07998 * 120.00092 * 180.02562 * 1 2 3 25 25 H 1.08007 * 120.00120 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.99750 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47796 * 5.00278 * 3 2 1 28 28 H 1.08993 * 109.47275 * 244.99729 * 3 2 1 29 29 H 1.07999 * 126.19288 * 0.02562 * 5 4 3 30 30 H 1.07996 * 119.81690 * 0.28456 * 8 7 6 31 31 H 1.07998 * 120.01995 * 179.97438 * 11 9 8 32 32 H 0.96993 * 120.00298 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.16437 * 0.02562 * 21 7 6 34 34 H 1.08001 * 125.94359 * 180.24202 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3211 1.5572 1.0584 6 6 4.8207 1.4951 2.3264 7 6 6.2406 1.6792 2.7199 8 6 7.2071 1.9377 1.7454 9 6 8.5350 2.1103 2.1042 10 9 9.4614 2.3595 1.1529 11 6 8.9152 2.0279 3.4276 12 6 7.9525 1.7680 4.4204 13 6 8.3373 1.6821 5.7786 14 1 7.6188 1.8899 6.5576 15 6 9.6489 1.3275 6.1130 16 7 10.4193 0.7564 5.2231 17 14 10.3000 1.6698 7.8300 18 1 10.1336 0.4585 8.6731 19 1 11.7399 2.0245 7.7518 20 1 9.5440 2.7982 8.4303 21 6 6.6063 1.5942 4.0551 22 6 3.7438 1.2308 3.1948 23 7 2.6569 1.1345 2.4760 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9354 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 4.8867 1.7498 0.1587 30 1 6.9177 2.0077 0.7073 31 1 9.9511 2.1628 3.7016 32 1 11.3286 0.5109 5.4548 33 1 5.8607 1.3939 4.8103 34 1 3.8059 1.1257 4.2679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222408982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:19 Heat of formation + Delta-G solvation = 48.312620 kcal Electronic energy + Delta-G solvation = -19194.946404 eV Core-core repulsion = 16008.304368 eV Total energy + Delta-G solvation = -3186.642035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.52558 -42.10733 -39.09398 -36.37308 -35.56727 -32.88628 -32.39868 -31.29702 -29.43624 -27.33683 -26.92330 -23.59874 -23.09712 -21.66155 -21.28191 -20.64247 -19.29555 -18.03454 -17.33224 -16.72991 -16.45436 -16.33915 -16.21800 -16.11877 -16.06351 -14.86675 -14.78721 -14.39873 -14.21390 -14.08266 -13.60914 -13.40094 -13.06575 -12.84071 -12.70495 -12.49071 -12.24418 -12.10992 -11.98458 -11.60617 -11.41151 -11.08357 -10.55994 -10.35121 -10.13532 -9.33256 -8.68552 -8.46507 -6.41431 0.52050 0.85472 1.03151 1.11880 1.40757 1.47308 1.56630 1.89623 2.08981 2.22143 2.78601 3.58006 3.68729 3.76537 3.90676 3.99024 4.09822 4.29077 4.43054 4.59541 4.60649 4.72623 4.83124 4.85442 4.96404 5.02603 5.16831 5.34363 5.53968 5.61507 5.69182 5.75570 5.82278 5.98117 6.01600 6.11842 6.33772 6.61962 6.74393 6.89433 6.92530 8.30841 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026952 B = 0.004032 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.649490 B = 6942.906589 C = 7798.018077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.189 4.189 3 C 0.154 3.846 4 N -0.367 5.367 5 C 0.074 3.926 6 C -0.209 4.209 7 C 0.049 3.951 8 C -0.269 4.269 9 C 0.097 3.903 10 F -0.166 7.166 11 C -0.234 4.234 12 C 0.108 3.892 13 C -0.491 4.491 14 H 0.087 0.913 15 C 0.034 3.966 16 N -0.823 5.823 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.255 1.255 21 C -0.232 4.232 22 C 0.054 3.946 23 N -0.315 5.315 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.133 0.867 29 H 0.204 0.796 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.289 0.711 33 H 0.112 0.888 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.131 0.380 -8.113 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.208 4.208 3 C 0.036 3.964 4 N -0.148 5.148 5 C -0.073 4.073 6 C -0.220 4.220 7 C 0.048 3.952 8 C -0.289 4.289 9 C 0.078 3.922 10 F -0.145 7.145 11 C -0.255 4.255 12 C 0.105 3.895 13 C -0.519 4.519 14 H 0.105 0.895 15 C -0.182 4.182 16 N -0.449 5.449 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.194 1.194 20 H -0.178 1.178 21 C -0.252 4.252 22 C -0.131 4.131 23 N -0.136 5.136 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.151 0.849 29 H 0.220 0.780 30 H 0.148 0.852 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.130 0.870 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.262 0.076 -8.317 16.510 hybrid contribution 1.892 0.067 0.579 1.980 sum -12.370 0.143 -7.739 14.592 Atomic orbital electron populations 1.24105 0.95201 1.03420 0.96244 1.22940 0.96787 0.97539 1.03491 1.21172 0.92079 0.97461 0.85737 1.48795 1.06132 1.53957 1.05929 1.22930 0.84924 0.99643 0.99782 1.19044 0.93176 1.16442 0.93331 1.17615 0.89828 0.95556 0.92235 1.20446 0.90380 1.18548 0.99544 1.17744 0.86530 1.02600 0.85349 1.91320 1.66458 1.92437 1.64331 1.21209 1.00998 1.12177 0.91113 1.17594 0.91141 0.87272 0.93470 1.19890 0.96919 1.42400 0.92736 0.89477 1.26847 0.96366 0.91249 1.03697 1.69889 1.08989 1.27989 1.38010 0.85156 0.77951 0.79911 0.76518 1.18543 1.19381 1.17844 1.21192 0.95974 1.13167 0.94895 1.24153 0.89359 0.98774 1.00863 1.77129 1.23555 1.24990 0.87932 0.86960 0.86955 0.87921 0.88185 0.84907 0.77956 0.85248 0.87606 0.90017 0.87039 0.79307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 14.32 67.78 0.97 -1.09 16 2 C -0.19 -3.19 9.69 25.64 0.25 -2.94 16 3 C 0.15 2.55 6.94 85.63 0.59 3.14 16 4 N -0.37 -9.60 3.66 -350.97 -1.28 -10.88 16 5 C 0.07 2.10 10.83 83.81 0.91 3.01 16 6 C -0.21 -7.47 6.04 -20.33 -0.12 -7.59 16 7 C 0.05 2.13 5.87 -20.09 -0.12 2.01 16 8 C -0.27 -11.75 9.55 22.71 0.22 -11.53 16 9 C 0.10 4.81 7.28 22.29 0.16 4.97 16 10 F -0.17 -7.91 17.26 44.97 0.78 -7.13 16 11 C -0.23 -12.80 8.66 22.80 0.20 -12.60 16 12 C 0.11 5.80 5.56 -21.32 -0.12 5.68 16 13 C -0.49 -25.97 9.05 23.46 0.21 -25.75 16 14 H 0.09 4.35 7.90 -2.91 -0.02 4.32 16 15 C 0.03 1.70 5.14 85.25 0.44 2.14 16 16 N -0.82 -43.52 10.96 21.82 0.24 -43.28 16 17 Si 0.98 37.73 29.59 68.60 2.03 39.76 16 18 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 19 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 21 C -0.23 -11.13 9.32 22.95 0.21 -10.91 16 22 C 0.05 1.85 11.41 85.50 0.98 2.82 16 23 N -0.32 -10.04 12.37 -56.46 -0.70 -10.74 16 24 H 0.11 1.29 8.06 -2.91 -0.02 1.27 16 25 H 0.11 1.22 7.84 -2.91 -0.02 1.20 16 26 H 0.10 1.95 8.06 -2.91 -0.02 1.92 16 27 H 0.10 1.40 7.79 -2.39 -0.02 1.38 16 28 H 0.13 1.37 8.07 -2.39 -0.02 1.35 16 29 H 0.20 4.33 7.27 -2.91 -0.02 4.31 16 30 H 0.13 4.70 6.99 -2.91 -0.02 4.68 16 31 H 0.11 6.12 6.18 -2.91 -0.02 6.10 16 32 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 33 H 0.11 4.92 7.03 -2.91 -0.02 4.90 16 34 H 0.19 5.89 7.34 -2.91 -0.02 5.87 16 Total: -1.00 -64.43 305.63 6.96 -57.47 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 1.12 Total: 23.45 kcal Atomic # 6 Polarization: -53.43 SS G_CDS: 4.78 Total: -48.65 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -1.74 Total: -64.90 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 0.78 Total: -7.13 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -64.43 6.96 -57.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222408982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.783 kcal (2) G-P(sol) polarization free energy of solvation -64.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds