Wall clock time and date at job start Mon Mar 30 2020 01:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 120.00155 * 2 1 4 4 N 1.46495 * 109.47060 * 125.00162 * 3 2 1 5 5 C 1.34715 * 125.81361 * 125.25092 * 4 3 2 6 6 C 1.37880 * 107.38793 * 180.13097 * 5 4 3 7 7 C 1.47921 * 126.36942 * 179.89296 * 6 5 4 8 8 C 1.39063 * 120.26483 * 309.74214 * 7 6 5 9 9 C 1.38099 * 120.17933 * 179.97438 * 8 7 6 10 10 C 1.38835 * 120.71583 * 359.97154 * 9 8 7 11 11 C 1.37713 * 120.52067 * 359.78607 * 10 9 8 12 12 F 1.35102 * 120.09889 * 180.23702 * 11 10 9 13 13 C 1.41026 * 119.79482 * 0.46815 * 11 10 9 14 14 C 1.40816 * 120.34048 * 179.78616 * 13 11 10 15 15 H 1.08003 * 119.99584 * 143.22501 * 14 13 11 16 16 C 1.40005 * 120.00100 * 323.22673 * 14 13 11 17 17 N 1.30839 * 120.00067 * 320.34726 * 16 14 13 18 18 Si 1.86801 * 119.99856 * 140.07566 * 16 14 13 19 19 H 1.48498 * 109.47327 * 180.27395 * 18 16 14 20 20 H 1.48502 * 109.47181 * 300.27322 * 18 16 14 21 21 H 1.48495 * 109.47181 * 60.27422 * 18 16 14 22 22 C 1.41111 * 107.25815 * 359.63404 * 6 5 4 23 23 N 1.30546 * 108.12354 * 0.22495 * 22 6 5 24 24 H 1.07998 * 119.99958 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99850 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99786 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46692 * 4.99876 * 3 2 1 28 28 H 1.09002 * 109.46943 * 245.00253 * 3 2 1 29 29 H 1.08003 * 126.30815 * 359.97438 * 5 4 3 30 30 H 1.08009 * 119.90921 * 359.95103 * 8 7 6 31 31 H 1.08007 * 119.64468 * 179.97438 * 9 8 7 32 32 H 1.08005 * 119.74417 * 180.02562 * 10 9 8 33 33 H 0.96995 * 120.00221 * 353.92888 * 17 16 14 34 34 H 1.08003 * 125.93806 * 180.19223 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3201 1.5559 1.0563 6 6 4.8219 1.4932 2.3390 7 6 6.2344 1.6757 2.7382 8 6 7.2424 0.9689 2.0915 9 6 8.5607 1.1410 2.4653 10 6 8.8994 2.0181 3.4869 11 6 7.9252 2.7364 4.1437 12 9 8.2648 3.5911 5.1333 13 6 6.5715 2.5735 3.7833 14 6 5.5656 3.2988 4.4502 15 1 4.7097 3.6642 3.9021 16 6 5.6749 3.5464 5.8239 17 7 6.1329 2.6161 6.6219 18 14 5.1740 5.2075 6.5163 19 1 5.3905 5.2170 7.9854 20 1 5.9950 6.2736 5.8881 21 1 3.7385 5.4523 6.2259 22 6 3.7362 1.2285 3.2007 23 7 2.6552 1.1344 2.4749 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 4.8865 1.7468 0.1567 30 1 6.9936 0.2833 1.2949 31 1 9.3366 0.5874 1.9574 32 1 9.9355 2.1409 3.7662 33 1 6.3135 1.7275 6.2775 34 1 3.7903 1.1218 4.2741 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222409212.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:10 Heat of formation + Delta-G solvation = 63.206731 kcal Electronic energy + Delta-G solvation = -19970.888974 eV Core-core repulsion = 16784.892796 eV Total energy + Delta-G solvation = -3185.996178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.17485 -40.43012 -37.30895 -35.23686 -33.87016 -31.60119 -30.73814 -29.41073 -27.86418 -25.84611 -24.89812 -21.74701 -21.23186 -20.59551 -19.67521 -19.31137 -18.02270 -16.76159 -15.46582 -15.22187 -15.06038 -14.69320 -14.66379 -14.06595 -13.91365 -13.48156 -13.17285 -12.93793 -12.70325 -12.31747 -12.15649 -11.88701 -11.63256 -11.36661 -11.16023 -10.74928 -10.70988 -10.43816 -10.32657 -10.07794 -9.69178 -9.49419 -8.80887 -8.75841 -8.14864 -7.55560 -7.24068 -7.06738 -4.40706 1.96278 2.27076 2.66379 2.70941 3.14244 3.19912 3.29402 3.42494 3.67222 4.05425 4.47369 4.66373 4.81974 5.02619 5.20438 5.41194 5.43594 5.65180 5.71756 5.89110 6.00577 6.08933 6.31601 6.40154 6.45365 6.50126 6.56975 6.71640 7.00449 7.25907 7.38977 7.47638 7.54945 7.70591 7.78684 7.81573 8.04005 8.22814 8.38659 8.69287 8.77788 9.95478 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.006136 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.683197 B = 4562.319950 C = 5737.639722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.163 4.163 3 C 0.167 3.833 4 N -0.381 5.381 5 C 0.024 3.976 6 C -0.129 4.129 7 C -0.116 4.116 8 C -0.078 4.078 9 C -0.232 4.232 10 C -0.119 4.119 11 C -0.012 4.012 12 F -0.153 7.153 13 C 0.087 3.913 14 C -0.525 4.525 15 H 0.086 0.914 16 C 0.059 3.941 17 N -0.761 5.761 18 Si 1.052 2.948 19 H -0.274 1.274 20 H -0.272 1.272 21 H -0.277 1.277 22 C 0.079 3.921 23 N -0.311 5.311 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.165 0.835 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.295 0.705 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 -2.411 -9.766 11.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.182 4.182 3 C 0.046 3.954 4 N -0.164 5.164 5 C -0.120 4.120 6 C -0.140 4.140 7 C -0.119 4.119 8 C -0.097 4.097 9 C -0.251 4.251 10 C -0.139 4.139 11 C -0.032 4.032 12 F -0.132 7.132 13 C 0.083 3.917 14 C -0.550 4.550 15 H 0.103 0.897 16 C -0.168 4.168 17 N -0.380 5.380 18 Si 0.876 3.124 19 H -0.199 1.199 20 H -0.198 1.198 21 H -0.202 1.202 22 C -0.107 4.107 23 N -0.132 5.132 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.129 0.871 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.183 0.817 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.124 -1.743 -8.409 11.159 hybrid contribution 1.196 -0.682 -1.326 1.912 sum -5.928 -2.425 -9.736 11.654 Atomic orbital electron populations 1.23842 0.95621 1.02111 0.99213 1.23014 0.96209 0.98107 1.00829 1.20598 0.91928 0.96482 0.86405 1.48135 1.05550 1.57167 1.05572 1.22779 0.84518 1.05196 0.99536 1.18997 0.94211 1.10300 0.90528 1.17765 0.88961 1.01375 1.03762 1.20624 0.92510 0.98323 0.98254 1.19995 0.95434 1.06286 1.03364 1.20585 0.97138 0.98221 0.97916 1.17808 0.93250 0.98005 0.94167 1.91328 1.92721 1.68970 1.60146 1.17488 0.90448 0.91031 0.92707 1.20171 1.07530 1.31558 0.95777 0.89650 1.26897 0.92172 1.03633 0.94062 1.70484 1.23768 1.04189 1.39601 0.83829 0.77191 0.74653 0.76773 1.19883 1.19776 1.20213 1.24017 0.89300 0.97391 1.00029 1.77041 1.23999 1.25571 0.86571 0.88326 0.88100 0.87057 0.90058 0.88388 0.81748 0.88821 0.88494 0.88272 0.89335 0.80241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 14.32 29.01 0.42 -1.24 16 2 C -0.16 -1.84 9.69 -36.03 -0.35 -2.18 16 3 C 0.17 2.00 6.93 -5.19 -0.04 1.96 16 4 N -0.38 -6.41 3.65 -61.92 -0.23 -6.63 16 5 C 0.02 0.42 11.39 -16.42 -0.19 0.23 16 6 C -0.13 -2.72 5.01 -104.97 -0.53 -3.25 16 7 C -0.12 -2.68 5.81 -104.25 -0.61 -3.28 16 8 C -0.08 -1.66 9.69 -39.33 -0.38 -2.04 16 9 C -0.23 -4.87 10.02 -39.41 -0.40 -5.26 16 10 C -0.12 -2.72 9.99 -39.55 -0.40 -3.11 16 11 C -0.01 -0.32 6.85 -38.72 -0.27 -0.58 16 12 F -0.15 -4.08 15.08 2.25 0.03 -4.04 16 13 C 0.09 2.21 5.05 -106.49 -0.54 1.68 16 14 C -0.52 -13.48 7.10 -37.95 -0.27 -13.75 16 15 H 0.09 2.24 7.42 -52.48 -0.39 1.85 16 16 C 0.06 1.50 3.77 -17.31 -0.07 1.43 16 17 N -0.76 -19.96 12.76 55.55 0.71 -19.25 16 18 Si 1.05 22.38 30.06 -169.99 -5.11 17.27 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 22 C 0.08 1.67 10.60 -17.01 -0.18 1.49 16 23 N -0.31 -6.16 12.33 30.84 0.38 -5.78 16 24 H 0.10 0.87 7.84 -52.49 -0.41 0.46 16 25 H 0.10 0.85 8.06 -52.48 -0.42 0.43 16 26 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 27 H 0.08 0.91 7.79 -51.93 -0.40 0.50 16 28 H 0.10 0.89 8.06 -51.93 -0.42 0.47 16 29 H 0.17 2.39 8.06 -52.48 -0.42 1.97 16 30 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 31 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 33 H 0.29 7.87 8.20 -40.82 -0.33 7.53 16 34 H 0.18 3.87 7.94 -52.48 -0.42 3.45 16 LS Contribution 307.06 15.07 4.63 4.63 Total: -1.00 -28.73 307.06 -7.07 -35.81 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -3.71 Total: 5.93 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -3.78 Total: -27.91 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.86 Total: -31.67 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.03 Total: -4.04 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.11 Total: 17.27 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.73 -7.07 -35.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222409212.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.014 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds