Wall clock time and date at job start Mon Mar 30 2020 01:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 120.00155 * 2 1 4 4 N 1.46495 * 109.47060 * 125.00162 * 3 2 1 5 5 C 1.34715 * 125.81361 * 125.25092 * 4 3 2 6 6 C 1.37880 * 107.38793 * 180.13097 * 5 4 3 7 7 C 1.47921 * 126.36942 * 179.89296 * 6 5 4 8 8 C 1.39063 * 120.26483 * 309.74214 * 7 6 5 9 9 C 1.38099 * 120.17933 * 179.97438 * 8 7 6 10 10 C 1.38835 * 120.71583 * 359.97154 * 9 8 7 11 11 C 1.37713 * 120.52067 * 359.78607 * 10 9 8 12 12 F 1.35102 * 120.09889 * 180.23702 * 11 10 9 13 13 C 1.41026 * 119.79482 * 0.46815 * 11 10 9 14 14 C 1.40816 * 120.34048 * 179.78616 * 13 11 10 15 15 H 1.08003 * 119.99584 * 143.22501 * 14 13 11 16 16 C 1.40005 * 120.00100 * 323.22673 * 14 13 11 17 17 N 1.30839 * 120.00067 * 320.34726 * 16 14 13 18 18 Si 1.86801 * 119.99856 * 140.07566 * 16 14 13 19 19 H 1.48498 * 109.47327 * 180.27395 * 18 16 14 20 20 H 1.48502 * 109.47181 * 300.27322 * 18 16 14 21 21 H 1.48495 * 109.47181 * 60.27422 * 18 16 14 22 22 C 1.41111 * 107.25815 * 359.63404 * 6 5 4 23 23 N 1.30546 * 108.12354 * 0.22495 * 22 6 5 24 24 H 1.07998 * 119.99958 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99850 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99786 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46692 * 4.99876 * 3 2 1 28 28 H 1.09002 * 109.46943 * 245.00253 * 3 2 1 29 29 H 1.08003 * 126.30815 * 359.97438 * 5 4 3 30 30 H 1.08009 * 119.90921 * 359.95103 * 8 7 6 31 31 H 1.08007 * 119.64468 * 179.97438 * 9 8 7 32 32 H 1.08005 * 119.74417 * 180.02562 * 10 9 8 33 33 H 0.96995 * 120.00221 * 353.92888 * 17 16 14 34 34 H 1.08003 * 125.93806 * 180.19223 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3201 1.5559 1.0563 6 6 4.8219 1.4932 2.3390 7 6 6.2344 1.6757 2.7382 8 6 7.2424 0.9689 2.0915 9 6 8.5607 1.1410 2.4653 10 6 8.8994 2.0181 3.4869 11 6 7.9252 2.7364 4.1437 12 9 8.2648 3.5911 5.1333 13 6 6.5715 2.5735 3.7833 14 6 5.5656 3.2988 4.4502 15 1 4.7097 3.6642 3.9021 16 6 5.6749 3.5464 5.8239 17 7 6.1329 2.6161 6.6219 18 14 5.1740 5.2075 6.5163 19 1 5.3905 5.2170 7.9854 20 1 5.9950 6.2736 5.8881 21 1 3.7385 5.4523 6.2259 22 6 3.7362 1.2285 3.2007 23 7 2.6552 1.1344 2.4749 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 4.8865 1.7468 0.1567 30 1 6.9936 0.2833 1.2949 31 1 9.3366 0.5874 1.9574 32 1 9.9355 2.1409 3.7662 33 1 6.3135 1.7275 6.2775 34 1 3.7903 1.1218 4.2741 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222409212.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:09 Heat of formation + Delta-G solvation = 48.701819 kcal Electronic energy + Delta-G solvation = -19971.517955 eV Core-core repulsion = 16784.892796 eV Total energy + Delta-G solvation = -3186.625158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.14289 -41.88871 -39.05470 -36.23632 -35.70819 -32.98516 -32.24991 -31.19838 -29.38548 -27.13322 -26.65511 -23.37922 -22.96265 -21.88771 -21.02245 -20.63349 -19.86212 -18.23038 -17.15009 -16.78512 -16.44570 -16.15143 -15.98686 -15.94891 -15.68127 -14.84388 -14.81769 -14.38540 -14.17589 -13.90185 -13.80449 -13.37820 -13.01287 -12.90830 -12.49032 -12.47500 -12.27272 -12.09227 -11.96948 -11.66241 -11.24236 -10.62178 -10.53063 -10.22329 -9.80878 -9.41241 -9.13019 -8.70650 -6.31242 0.60843 0.89538 1.06097 1.13529 1.45986 1.58218 1.74296 1.97490 2.05309 2.30271 2.64505 3.39754 3.69175 3.91362 4.04487 4.13956 4.15034 4.30171 4.35944 4.46850 4.60203 4.78250 4.84188 4.90503 4.95920 5.13408 5.24375 5.51699 5.58041 5.60753 5.68034 5.76919 5.80186 5.99796 6.02178 6.16126 6.30806 6.41468 6.81671 6.88917 6.93669 8.00696 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.006136 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.683197 B = 4562.319950 C = 5737.639722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.184 4.184 3 C 0.156 3.844 4 N -0.367 5.367 5 C 0.051 3.949 6 C -0.172 4.172 7 C -0.111 4.111 8 C -0.083 4.083 9 C -0.212 4.212 10 C -0.128 4.128 11 C -0.051 4.051 12 F -0.169 7.169 13 C 0.061 3.939 14 C -0.549 4.549 15 H 0.070 0.930 16 C 0.030 3.970 17 N -0.788 5.788 18 Si 1.090 2.910 19 H -0.271 1.271 20 H -0.271 1.271 21 H -0.259 1.259 22 C 0.061 3.939 23 N -0.327 5.327 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.135 0.865 29 H 0.205 0.795 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.278 0.722 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 -2.920 -12.788 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.203 4.203 3 C 0.037 3.963 4 N -0.149 5.149 5 C -0.095 4.095 6 C -0.183 4.183 7 C -0.113 4.113 8 C -0.101 4.101 9 C -0.231 4.231 10 C -0.148 4.148 11 C -0.070 4.070 12 F -0.148 7.148 13 C 0.058 3.942 14 C -0.576 4.576 15 H 0.088 0.912 16 C -0.191 4.191 17 N -0.408 5.408 18 Si 0.909 3.091 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.183 1.183 22 C -0.124 4.124 23 N -0.149 5.149 24 H 0.127 0.873 25 H 0.132 0.868 26 H 0.124 0.876 27 H 0.110 0.890 28 H 0.152 0.848 29 H 0.222 0.778 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.577 -2.265 -11.445 13.912 hybrid contribution 1.281 -0.679 -0.683 1.603 sum -6.296 -2.944 -12.129 13.979 Atomic orbital electron populations 1.24089 0.95282 1.03312 0.96692 1.22949 0.96721 0.97542 1.03086 1.21111 0.92061 0.97291 0.85851 1.48595 1.06187 1.54604 1.05548 1.23239 0.84871 1.02023 0.99389 1.19044 0.93460 1.13659 0.92126 1.18135 0.90773 1.00000 1.02401 1.21025 0.92090 0.98183 0.98803 1.20514 0.96533 1.04434 1.01635 1.20911 0.97620 0.98150 0.98072 1.18248 0.94233 0.99466 0.95089 1.91267 1.92837 1.69674 1.61034 1.17831 0.90580 0.91830 0.93999 1.20031 1.07732 1.33819 0.96015 0.91233 1.27902 0.91400 1.05354 0.94476 1.70594 1.26945 1.03803 1.39470 0.83363 0.77888 0.71505 0.76331 1.19533 1.19656 1.18323 1.23755 0.90229 0.98896 0.99508 1.76968 1.23571 1.26167 0.88200 0.87299 0.86798 0.87630 0.89002 0.84772 0.77833 0.85336 0.84618 0.86395 0.91090 0.82458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 14.32 67.78 0.97 -1.61 16 2 C -0.18 -3.64 9.69 25.64 0.25 -3.39 16 3 C 0.16 3.18 6.93 85.64 0.59 3.77 16 4 N -0.37 -11.44 3.65 -349.81 -1.28 -12.71 16 5 C 0.05 1.67 11.39 84.17 0.96 2.62 16 6 C -0.17 -7.13 5.01 -20.09 -0.10 -7.23 16 7 C -0.11 -5.05 5.81 -19.62 -0.11 -5.17 16 8 C -0.08 -3.26 9.69 22.43 0.22 -3.04 16 9 C -0.21 -8.27 10.02 22.38 0.22 -8.04 16 10 C -0.13 -5.72 9.99 22.29 0.22 -5.50 16 11 C -0.05 -2.64 6.85 22.83 0.16 -2.48 16 12 F -0.17 -9.37 15.08 44.97 0.68 -8.69 16 13 C 0.06 3.19 5.05 -21.07 -0.11 3.08 16 14 C -0.55 -29.56 7.10 23.33 0.17 -29.39 16 15 H 0.07 3.84 7.42 -2.91 -0.02 3.82 16 16 C 0.03 1.58 3.77 85.27 0.32 1.90 16 17 N -0.79 -43.59 12.76 21.84 0.28 -43.31 16 18 Si 1.09 46.62 30.06 68.60 2.06 48.69 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 22 C 0.06 2.65 10.60 85.59 0.91 3.56 16 23 N -0.33 -12.83 12.33 -56.34 -0.69 -13.52 16 24 H 0.11 1.58 7.84 -2.91 -0.02 1.55 16 25 H 0.11 1.58 8.06 -2.91 -0.02 1.56 16 26 H 0.11 2.21 8.06 -2.91 -0.02 2.19 16 27 H 0.09 1.73 7.79 -2.39 -0.02 1.71 16 28 H 0.13 1.77 8.06 -2.39 -0.02 1.75 16 29 H 0.20 4.89 8.06 -2.91 -0.02 4.86 16 30 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 31 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 33 H 0.28 15.90 8.20 -92.71 -0.76 15.14 16 34 H 0.16 7.35 7.94 -2.91 -0.02 7.32 16 Total: -1.00 -65.13 307.06 6.83 -58.30 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 1.11 Total: 22.16 kcal Atomic # 6 Polarization: -55.58 SS G_CDS: 4.67 Total: -50.91 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -1.69 Total: -69.55 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 0.68 Total: -8.69 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.06 Total: 48.69 kcal Total: -65.13 6.83 -58.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222409212.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.004 kcal (2) G-P(sol) polarization free energy of solvation -65.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds