Wall clock time and date at job start Mon Mar 30 2020 01:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99931 * 2 1 4 4 C 1.50697 * 109.47157 * 66.04082 * 3 2 1 5 5 H 1.08000 * 120.00163 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99934 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99765 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 119.99934 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47279 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47365 * 119.99820 * 8 6 4 11 11 H 1.48506 * 109.47289 * 239.99680 * 8 6 4 12 12 C 1.46896 * 111.00569 * 236.04516 * 2 1 3 13 13 C 1.50705 * 109.47066 * 293.95568 * 12 2 1 14 14 C 1.38830 * 120.34952 * 270.01829 * 13 12 2 15 15 C 1.38381 * 118.48403 * 179.97438 * 14 13 12 16 16 C 1.38925 * 119.10900 * 0.02562 * 15 14 13 17 17 O 1.35677 * 119.68043 * 180.02562 * 16 15 14 18 18 C 1.42901 * 116.99404 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.47213 * 300.00058 * 18 17 16 20 20 F 1.39902 * 109.47148 * 60.00749 * 18 17 16 21 21 N 1.32247 * 120.62932 * 0.02562 * 16 15 14 22 22 C 1.31964 * 121.65048 * 359.97438 * 21 16 15 23 23 H 1.09004 * 109.46945 * 183.95482 * 1 2 3 24 24 H 1.08998 * 109.47621 * 303.95380 * 1 2 3 25 25 H 1.09003 * 109.47357 * 63.95716 * 1 2 3 26 26 H 1.09001 * 109.47644 * 186.04924 * 3 2 1 27 27 H 1.09002 * 109.46672 * 306.04488 * 3 2 1 28 28 H 0.97003 * 119.99692 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47447 * 173.95021 * 12 2 1 30 30 H 1.09004 * 109.46833 * 53.94743 * 12 2 1 31 31 H 1.08005 * 120.75911 * 359.97438 * 14 13 12 32 32 H 1.08001 * 120.44529 * 180.02562 * 15 14 13 33 33 H 1.09001 * 109.46724 * 180.02562 * 18 17 16 34 34 H 1.08004 * 119.58141 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0744 1.5113 2.0487 6 6 2.0266 3.3496 1.5284 7 7 2.7118 4.0020 0.6148 8 14 1.5827 4.1870 3.1380 9 1 0.8153 3.2443 3.9912 10 1 2.8245 4.5946 3.8429 11 1 0.7547 5.3879 2.8594 12 6 1.9955 -0.7659 -1.1375 13 6 1.6370 -2.2204 -0.9728 14 6 2.4921 -3.0817 -0.2985 15 6 2.1244 -4.4095 -0.1694 16 6 0.9195 -4.8333 -0.7159 17 8 0.5474 -6.1325 -0.5956 18 6 -0.7028 -6.5057 -1.1786 19 9 -1.7321 -5.7637 -0.5895 20 9 -0.6712 -6.2496 -2.5536 21 7 0.1320 -3.9826 -1.3523 22 6 0.4556 -2.7108 -1.4915 23 1 -0.3633 -1.0253 0.0709 24 1 -0.3634 0.5739 0.8524 25 1 -0.3634 0.4512 -0.9233 26 1 3.0797 1.3446 -0.1083 27 1 1.5610 1.9273 -0.8310 28 1 2.9858 4.9184 0.7765 29 1 3.0798 -0.6610 -1.1755 30 1 1.5611 -0.3873 -2.0627 31 1 3.4230 -2.7235 0.1157 32 1 2.7654 -5.1069 0.3494 33 1 -0.8792 -7.5682 -1.0106 34 1 -0.2129 -2.0451 -2.0173 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232953522.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:45 Heat of formation + Delta-G solvation = -104.417307 kcal Electronic energy + Delta-G solvation = -20497.106271 eV Core-core repulsion = 16873.072145 eV Total energy + Delta-G solvation = -3624.034127 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.13264 -47.25902 -40.61224 -38.23675 -36.38944 -32.92536 -32.35402 -31.02188 -27.44312 -26.91172 -26.08291 -23.92326 -23.47091 -21.86024 -20.25328 -19.27546 -18.39291 -17.92390 -16.52270 -16.46691 -15.66608 -15.29080 -15.09814 -14.76966 -14.36963 -14.21885 -13.96781 -13.85438 -13.57497 -13.18756 -13.13964 -12.85961 -12.37998 -12.33069 -11.98989 -11.60681 -11.52456 -11.10804 -10.91778 -10.69708 -10.48653 -9.98741 -9.77052 -9.58277 -9.23804 -8.56528 -8.44387 -7.31689 -6.05953 -4.07215 1.12896 1.30397 2.37200 3.29529 3.37156 3.41872 3.42233 3.73221 4.12326 4.39436 4.41352 4.62258 4.88413 4.96826 5.05554 5.13169 5.24941 5.31248 5.57062 5.86619 5.89413 6.04019 6.14912 6.26505 6.32556 6.48780 6.72713 6.89717 7.21642 7.28280 7.75601 7.77827 8.01731 8.13161 8.48683 9.00667 9.57268 11.04931 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.037642 B = 0.003551 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.664831 B = 7884.252811 C = 8045.936771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.535 5.535 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.095 3.905 13 C -0.133 4.133 14 C -0.026 4.026 15 C -0.175 4.175 16 C 0.289 3.711 17 O -0.322 6.322 18 C 0.425 3.575 19 F -0.194 7.194 20 F -0.195 7.195 21 N -0.524 5.524 22 C 0.142 3.858 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.013 0.987 26 H 0.031 0.969 27 H -0.007 1.007 28 H 0.261 0.739 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.174 0.826 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.429 -20.040 -4.502 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.260 5.260 3 C 0.067 3.933 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.034 4.034 13 C -0.136 4.136 14 C -0.052 4.052 15 C -0.195 4.195 16 C 0.111 3.889 17 O -0.234 6.234 18 C 0.335 3.665 19 F -0.175 7.175 20 F -0.177 7.177 21 N -0.245 5.245 22 C -0.014 4.014 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.032 0.968 26 H 0.049 0.951 27 H 0.011 0.989 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.190 0.810 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.876 -20.572 -4.354 21.382 hybrid contribution 0.012 1.377 0.283 1.406 sum -3.865 -19.195 -4.071 19.999 Atomic orbital electron populations 1.22286 0.88800 0.99631 1.00748 1.62171 1.07152 1.17804 1.38840 1.19772 0.95441 0.81211 0.96843 1.21189 1.34822 0.96893 1.01660 0.91782 1.24987 0.95267 0.97335 0.97017 1.69966 1.38406 1.11418 1.34043 0.86443 0.78170 0.79318 0.83505 1.19651 1.20986 1.21102 1.20944 1.00798 0.88022 0.93596 1.20924 0.95601 0.97753 0.99287 1.21387 0.99464 0.91029 0.93324 1.21042 0.96108 0.97302 1.05080 1.19567 0.91471 0.83360 0.94493 1.86755 1.38129 1.24425 1.74132 1.23047 0.75245 0.94845 0.73408 1.93109 1.60027 1.80760 1.83645 1.93097 1.95691 1.95860 1.33057 1.67306 1.33335 1.05251 1.18597 1.22304 0.94287 0.89365 0.95462 0.93657 0.90561 0.96846 0.95079 0.98932 0.92948 0.90041 0.94515 0.83510 0.84070 0.81014 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.97 60.06 0.54 1.20 16 2 N -0.54 -11.16 4.74 -245.82 -1.17 -12.33 16 3 C 0.19 4.86 4.72 -4.98 -0.02 4.84 16 4 C -0.51 -14.02 8.46 -34.44 -0.29 -14.31 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.10 1.61 5.14 -4.98 -0.03 1.58 16 13 C -0.13 -1.99 4.89 -104.47 -0.51 -2.50 16 14 C -0.03 -0.35 9.85 -39.31 -0.39 -0.74 16 15 C -0.17 -2.21 10.04 -39.27 -0.39 -2.61 16 16 C 0.29 4.09 7.19 -17.12 -0.12 3.97 16 17 O -0.32 -3.87 10.41 -18.73 -0.20 -4.06 16 18 C 0.42 4.21 6.06 101.05 0.61 4.82 16 19 F -0.19 -2.45 16.57 2.25 0.04 -2.41 16 20 F -0.20 -2.37 16.57 2.25 0.04 -2.33 16 21 N -0.52 -8.08 8.08 -13.33 -0.11 -8.19 16 22 C 0.14 2.11 9.14 -17.57 -0.16 1.95 16 23 H 0.04 0.79 6.18 -51.93 -0.32 0.47 16 24 H 0.08 1.60 6.76 -51.93 -0.35 1.25 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 27 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.08 1.33 7.88 -51.93 -0.41 0.92 16 30 H 0.04 0.60 8.07 -51.93 -0.42 0.18 16 31 H 0.15 1.74 8.06 -52.48 -0.42 1.31 16 32 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.17 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.16 2.14 8.04 -52.48 -0.42 1.72 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -31.98 301.24 -5.96 -37.94 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -3.96 Total: -3.64 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.86 Total: -0.36 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.54 Total: -46.11 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.20 Total: -4.06 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.07 Total: -4.74 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.98 -5.96 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232953522.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.476 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds