Wall clock time and date at job start Mon Mar 30 2020 01:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99931 * 2 1 4 4 C 1.50697 * 109.47157 * 66.04082 * 3 2 1 5 5 H 1.08000 * 120.00163 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99934 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99765 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 119.99934 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47279 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47365 * 119.99820 * 8 6 4 11 11 H 1.48506 * 109.47289 * 239.99680 * 8 6 4 12 12 C 1.46896 * 111.00569 * 236.04516 * 2 1 3 13 13 C 1.50705 * 109.47066 * 293.95568 * 12 2 1 14 14 C 1.38830 * 120.34952 * 270.01829 * 13 12 2 15 15 C 1.38381 * 118.48403 * 179.97438 * 14 13 12 16 16 C 1.38925 * 119.10900 * 0.02562 * 15 14 13 17 17 O 1.35677 * 119.68043 * 180.02562 * 16 15 14 18 18 C 1.42901 * 116.99404 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.47213 * 300.00058 * 18 17 16 20 20 F 1.39902 * 109.47148 * 60.00749 * 18 17 16 21 21 N 1.32247 * 120.62932 * 0.02562 * 16 15 14 22 22 C 1.31964 * 121.65048 * 359.97438 * 21 16 15 23 23 H 1.09004 * 109.46945 * 183.95482 * 1 2 3 24 24 H 1.08998 * 109.47621 * 303.95380 * 1 2 3 25 25 H 1.09003 * 109.47357 * 63.95716 * 1 2 3 26 26 H 1.09001 * 109.47644 * 186.04924 * 3 2 1 27 27 H 1.09002 * 109.46672 * 306.04488 * 3 2 1 28 28 H 0.97003 * 119.99692 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47447 * 173.95021 * 12 2 1 30 30 H 1.09004 * 109.46833 * 53.94743 * 12 2 1 31 31 H 1.08005 * 120.75911 * 359.97438 * 14 13 12 32 32 H 1.08001 * 120.44529 * 180.02562 * 15 14 13 33 33 H 1.09001 * 109.46724 * 180.02562 * 18 17 16 34 34 H 1.08004 * 119.58141 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0744 1.5113 2.0487 6 6 2.0266 3.3496 1.5284 7 7 2.7118 4.0020 0.6148 8 14 1.5827 4.1870 3.1380 9 1 0.8153 3.2443 3.9912 10 1 2.8245 4.5946 3.8429 11 1 0.7547 5.3879 2.8594 12 6 1.9955 -0.7659 -1.1375 13 6 1.6370 -2.2204 -0.9728 14 6 2.4921 -3.0817 -0.2985 15 6 2.1244 -4.4095 -0.1694 16 6 0.9195 -4.8333 -0.7159 17 8 0.5474 -6.1325 -0.5956 18 6 -0.7028 -6.5057 -1.1786 19 9 -1.7321 -5.7637 -0.5895 20 9 -0.6712 -6.2496 -2.5536 21 7 0.1320 -3.9826 -1.3523 22 6 0.4556 -2.7108 -1.4915 23 1 -0.3633 -1.0253 0.0709 24 1 -0.3634 0.5739 0.8524 25 1 -0.3634 0.4512 -0.9233 26 1 3.0797 1.3446 -0.1083 27 1 1.5610 1.9273 -0.8310 28 1 2.9858 4.9184 0.7765 29 1 3.0798 -0.6610 -1.1755 30 1 1.5611 -0.3873 -2.0627 31 1 3.4230 -2.7235 0.1157 32 1 2.7654 -5.1069 0.3494 33 1 -0.8792 -7.5682 -1.0106 34 1 -0.2129 -2.0451 -2.0173 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232953522.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:44 Heat of formation + Delta-G solvation = -127.348693 kcal Electronic energy + Delta-G solvation = -20498.100651 eV Core-core repulsion = 16873.072145 eV Total energy + Delta-G solvation = -3625.028506 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.98524 -48.13185 -41.67612 -39.31505 -37.91119 -34.81154 -33.62515 -32.29796 -29.21350 -28.32562 -27.18551 -25.54840 -24.50618 -23.28125 -21.85039 -20.22025 -19.25608 -18.78628 -18.53578 -17.48799 -16.88330 -16.72519 -16.34531 -16.18990 -15.80429 -15.58118 -15.32855 -14.86225 -14.67040 -14.46840 -14.14676 -13.98704 -13.86143 -13.52670 -13.32415 -13.14936 -12.91489 -12.77643 -12.60689 -12.55254 -12.23963 -11.88729 -11.30722 -10.86344 -10.68417 -10.60943 -9.66180 -9.01868 -8.19624 -6.28969 0.03830 0.22668 1.41805 1.42885 1.54311 1.55989 2.40948 2.62283 2.67889 3.13442 3.19521 3.46825 3.70353 3.78494 3.81969 3.94136 3.98003 4.15897 4.45997 4.49769 4.65902 4.70742 4.76573 4.87277 5.06009 5.19695 5.27649 5.30678 5.34991 5.65765 5.87053 6.05139 6.29071 6.60126 6.68996 6.87014 7.40638 8.91347 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.037642 B = 0.003551 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.664831 B = 7884.252811 C = 8045.936771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.966 3.034 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.099 3.901 13 C -0.144 4.144 14 C -0.026 4.026 15 C -0.169 4.169 16 C 0.278 3.722 17 O -0.320 6.320 18 C 0.415 3.585 19 F -0.212 7.212 20 F -0.211 7.211 21 N -0.543 5.543 22 C 0.136 3.864 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.017 0.983 26 H 0.012 0.988 27 H -0.034 1.034 28 H 0.264 0.736 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.236 0.764 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 -21.681 -3.557 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.266 5.266 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.194 4.194 7 N -0.574 5.574 8 Si 0.791 3.209 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.205 1.205 12 C -0.029 4.029 13 C -0.147 4.147 14 C -0.052 4.052 15 C -0.189 4.189 16 C 0.101 3.899 17 O -0.233 6.233 18 C 0.326 3.674 19 F -0.194 7.194 20 F -0.192 7.192 21 N -0.265 5.265 22 C -0.020 4.020 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.036 0.964 26 H 0.030 0.970 27 H -0.016 1.016 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.252 0.748 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.050 -22.241 -3.416 22.863 hybrid contribution 0.056 1.765 -0.061 1.766 sum -3.994 -20.476 -3.477 21.150 Atomic orbital electron populations 1.22208 0.87930 1.00565 1.00050 1.62057 1.07988 1.15348 1.41217 1.19425 0.94095 0.83366 0.95062 1.21488 1.34741 0.97445 1.02401 0.92117 1.25854 0.95053 0.98038 1.00502 1.70079 1.39387 1.11876 1.36037 0.85374 0.78068 0.78187 0.79223 1.18961 1.20333 1.20529 1.20912 1.00819 0.88849 0.92294 1.20715 0.96458 0.96582 1.00933 1.21622 0.99691 0.91293 0.92583 1.21346 0.95871 0.97360 1.04273 1.19947 0.91847 0.84058 0.94087 1.86769 1.39172 1.23129 1.74184 1.24153 0.73902 0.97081 0.72287 1.93071 1.60821 1.81597 1.83896 1.93065 1.95668 1.96099 1.34413 1.67324 1.34175 1.05481 1.19498 1.22382 0.94409 0.89575 0.95654 0.91583 0.92536 0.96420 0.97023 1.01588 0.92682 0.89779 0.94118 0.82014 0.81114 0.74817 0.81975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 8.97 127.69 1.14 2.72 16 2 N -0.54 -22.70 4.74 -931.65 -4.42 -27.12 16 3 C 0.21 10.70 4.72 85.56 0.40 11.11 16 4 C -0.52 -29.23 8.46 25.60 0.22 -29.01 16 5 H 0.06 3.37 7.12 -2.91 -0.02 3.35 16 6 C 0.00 0.20 5.46 84.66 0.46 0.66 16 7 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 8 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.10 3.34 5.14 85.56 0.44 3.78 16 13 C -0.14 -4.18 4.89 -19.77 -0.10 -4.27 16 14 C -0.03 -0.65 9.85 22.45 0.22 -0.43 16 15 C -0.17 -3.85 10.04 22.47 0.23 -3.62 16 16 C 0.28 7.35 7.19 84.80 0.61 7.96 16 17 O -0.32 -6.90 10.41 -89.95 -0.94 -7.83 16 18 C 0.41 7.20 6.06 113.37 0.69 7.89 16 19 F -0.21 -5.02 16.57 44.97 0.75 -4.28 16 20 F -0.21 -4.78 16.57 44.97 0.75 -4.03 16 21 N -0.54 -16.12 8.08 -308.95 -2.50 -18.62 16 22 C 0.14 3.92 9.14 84.63 0.77 4.70 16 23 H 0.07 2.26 6.18 -2.38 -0.01 2.25 16 24 H 0.06 2.38 6.76 -2.39 -0.02 2.37 16 25 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.01 0.64 7.93 -2.39 -0.02 0.62 16 27 H -0.03 -1.88 8.12 -2.39 -0.02 -1.90 16 28 H 0.26 14.72 8.31 -92.71 -0.77 13.94 16 29 H 0.08 2.74 7.88 -2.39 -0.02 2.72 16 30 H 0.04 1.33 8.07 -2.38 -0.02 1.31 16 31 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.24 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.16 4.34 8.04 -2.91 -0.02 4.32 16 Total: -1.00 -69.05 301.24 2.15 -66.90 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 1.11 Total: 2.56 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 5.09 Total: 1.48 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -6.63 Total: -100.79 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.94 Total: -7.83 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 1.49 Total: -8.31 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.05 2.15 -66.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232953522.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.448 kcal (2) G-P(sol) polarization free energy of solvation -69.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds