Wall clock time and date at job start Mon Mar 30 2020 01:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00374 * 2 1 4 4 C 1.50699 * 109.47600 * 293.95913 * 3 2 1 5 5 H 1.08004 * 119.99448 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00114 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99969 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 120.00293 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47368 * 90.00336 * 8 6 4 10 10 H 1.48500 * 109.47351 * 210.00351 * 8 6 4 11 11 H 1.48505 * 109.47124 * 330.00248 * 8 6 4 12 12 C 1.46897 * 111.00112 * 123.95948 * 2 1 3 13 13 C 1.50709 * 109.47225 * 66.04125 * 12 2 1 14 14 C 1.38825 * 120.75588 * 270.22211 * 13 12 2 15 15 C 1.38050 * 119.28846 * 180.29469 * 14 13 12 16 16 N 1.31966 * 120.82946 * 359.73156 * 15 14 13 17 17 C 1.32249 * 121.65364 * 359.97438 * 16 15 14 18 18 O 1.35672 * 119.68580 * 180.02562 * 17 16 15 19 19 C 1.42896 * 117.00001 * 0.02562 * 18 17 16 20 20 F 1.39896 * 109.47396 * 299.99956 * 19 18 17 21 21 F 1.39899 * 109.47334 * 60.00379 * 19 18 17 22 22 C 1.38373 * 120.75398 * 89.99886 * 13 12 2 23 23 H 1.09005 * 109.46430 * 296.04541 * 1 2 3 24 24 H 1.08996 * 109.46835 * 56.03784 * 1 2 3 25 25 H 1.08994 * 109.47459 * 176.04703 * 1 2 3 26 26 H 1.09000 * 109.46904 * 53.96058 * 3 2 1 27 27 H 1.08999 * 109.47395 * 173.95246 * 3 2 1 28 28 H 0.97001 * 120.00328 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47376 * 306.04536 * 12 2 1 30 30 H 1.08998 * 109.47435 * 186.04184 * 12 2 1 31 31 H 1.07999 * 120.36223 * 0.04777 * 14 13 12 32 32 H 1.07997 * 119.58537 * 179.75177 * 15 14 13 33 33 H 1.09003 * 109.46976 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.44944 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0472 -1.2983 5 1 1.0746 1.5113 -2.0487 6 6 2.0279 3.3491 -1.5287 7 7 1.7145 3.9391 -2.6616 8 14 3.0012 4.2757 -0.2312 9 1 4.4535 4.0622 -0.4556 10 1 2.6940 5.7256 -0.3235 11 1 2.6298 3.7758 1.1170 12 6 1.9955 -0.7661 1.1375 13 6 1.6369 -2.2206 0.9727 14 6 0.4480 -2.7212 1.4858 15 6 0.1527 -4.0598 1.3227 16 7 0.9823 -4.8623 0.6830 17 6 2.1211 -4.4216 0.1752 18 8 2.9442 -5.2818 -0.4755 19 6 2.5157 -6.6416 -0.5725 20 9 2.3560 -7.1730 0.7117 21 9 1.2963 -6.6987 -1.2559 22 6 2.4830 -3.0864 0.3025 23 1 -0.3632 0.4513 0.9234 24 1 -0.3633 0.5741 -0.8523 25 1 -0.3634 -1.0251 -0.0708 26 1 1.5613 1.9272 0.8310 27 1 3.0798 1.3443 0.1083 28 1 1.9892 4.8552 -2.8235 29 1 1.5612 -0.3874 2.0628 30 1 3.0798 -0.6613 1.1755 31 1 -0.2367 -2.0713 2.0104 32 1 -0.7689 -4.4552 1.7234 33 1 3.2633 -7.2202 -1.1152 34 1 3.4144 -2.7300 -0.1120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237612567.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:46 Heat of formation + Delta-G solvation = -99.644278 kcal Electronic energy + Delta-G solvation = -20541.366977 eV Core-core repulsion = 16917.539825 eV Total energy + Delta-G solvation = -3623.827152 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.13109 -47.25431 -40.63604 -38.21967 -36.70982 -33.18534 -32.10213 -30.73968 -28.15194 -27.28919 -26.14045 -24.24461 -23.26958 -21.73800 -20.31917 -18.72797 -18.39114 -17.91853 -16.92602 -16.32768 -15.97501 -15.59149 -15.21971 -14.76531 -14.59411 -14.25899 -14.04483 -13.95892 -13.57577 -13.32027 -13.08807 -12.58831 -12.42116 -12.37752 -12.15486 -12.06526 -11.70939 -11.23619 -11.01638 -10.62084 -10.50528 -10.02155 -9.67022 -9.56805 -9.34221 -8.70972 -8.61426 -7.51528 -6.09307 -4.07501 1.12806 1.22561 2.38332 3.24863 3.32710 3.33146 3.42360 3.69821 4.10517 4.37505 4.39547 4.63198 4.68241 4.89923 4.97205 5.09702 5.17414 5.23284 5.54448 5.76025 5.82736 5.85796 6.02162 6.14134 6.21191 6.43421 6.61100 6.77982 6.89663 6.90049 7.49474 7.74329 7.77021 7.91645 8.58822 8.99068 9.51433 11.03704 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.034066 B = 0.003762 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.732566 B = 7440.627025 C = 7615.113404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.524 5.524 3 C 0.162 3.838 4 C -0.511 4.511 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.084 3.916 13 C 0.012 3.988 14 C -0.191 4.191 15 C 0.134 3.866 16 N -0.530 5.530 17 C 0.300 3.700 18 O -0.318 6.318 19 C 0.425 3.575 20 F -0.196 7.196 21 F -0.194 7.194 22 C -0.153 4.153 23 H 0.014 0.986 24 H 0.082 0.918 25 H 0.051 0.949 26 H -0.009 1.009 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 -18.775 8.531 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.248 5.248 3 C 0.036 3.964 4 C -0.549 4.549 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.044 4.044 13 C 0.003 3.997 14 C -0.212 4.212 15 C -0.021 4.021 16 N -0.252 5.252 17 C 0.122 3.878 18 O -0.231 6.231 19 C 0.335 3.665 20 F -0.178 7.178 21 F -0.176 7.176 22 C -0.174 4.174 23 H 0.032 0.968 24 H 0.101 0.899 25 H 0.069 0.931 26 H 0.009 0.991 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.155 0.845 32 H 0.177 0.823 33 H 0.191 0.809 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.045 -19.661 7.791 21.174 hybrid contribution 0.196 1.655 1.446 2.206 sum 1.241 -18.006 9.237 20.275 Atomic orbital electron populations 1.22353 0.87937 1.00296 1.01061 1.61985 1.07809 1.16562 1.38473 1.20223 0.95002 0.83569 0.97576 1.21002 1.35881 0.97261 1.00806 0.90074 1.24890 0.95761 0.97313 0.95289 1.69889 1.46710 1.13310 1.23850 0.86869 0.80921 0.79369 0.82625 1.20078 1.21153 1.19297 1.21138 1.01131 0.88258 0.93873 1.20177 0.92210 0.95942 0.91352 1.22008 0.98231 0.96802 1.04118 1.22281 0.96902 0.89686 0.93222 1.67280 1.03958 1.40075 1.13916 1.19566 0.88225 0.88080 0.91910 1.86789 1.45443 1.19151 1.71678 1.23075 0.83880 0.81486 0.78085 1.93088 1.96274 1.85986 1.42449 1.93103 1.49231 1.95808 1.79429 1.20961 1.03389 0.89755 1.03322 0.96775 0.89920 0.93062 0.99140 0.95636 0.92587 0.93949 0.89713 0.84486 0.82302 0.80893 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 8.99 60.07 0.54 1.13 16 2 N -0.52 -10.54 4.74 -245.83 -1.17 -11.70 16 3 C 0.16 3.79 3.79 -4.98 -0.02 3.77 16 4 C -0.51 -14.24 9.01 -34.44 -0.31 -14.55 16 5 H 0.08 2.48 7.37 -52.48 -0.39 2.09 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 8 Si 0.87 20.98 27.47 -169.99 -4.67 16.31 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 12 C 0.08 1.34 5.16 -4.97 -0.03 1.31 16 13 C 0.01 0.17 4.90 -104.35 -0.51 -0.34 16 14 C -0.19 -2.42 8.11 -39.43 -0.32 -2.74 16 15 C 0.13 1.68 11.18 -17.56 -0.20 1.48 16 16 N -0.53 -7.75 8.08 -13.33 -0.11 -7.86 16 17 C 0.30 4.41 7.19 -17.12 -0.12 4.29 16 18 O -0.32 -4.11 10.41 -18.72 -0.19 -4.30 16 19 C 0.43 4.34 6.06 101.05 0.61 4.95 16 20 F -0.20 -2.34 16.57 2.25 0.04 -2.31 16 21 F -0.19 -2.45 16.57 2.25 0.04 -2.41 16 22 C -0.15 -2.24 9.75 -39.28 -0.38 -2.63 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.08 1.74 6.76 -51.93 -0.35 1.38 16 25 H 0.05 0.84 6.17 -51.93 -0.32 0.52 16 26 H -0.01 -0.21 7.18 -51.93 -0.37 -0.59 16 27 H 0.03 0.59 7.36 -51.93 -0.38 0.21 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 31 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.17 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 297.72 15.07 4.49 4.49 Total: -1.00 -32.65 297.72 -5.56 -38.21 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -3.92 Total: -2.55 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -0.83 Total: -1.46 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.50 Total: -45.98 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.19 Total: -4.30 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.07 Total: -4.72 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.65 -5.56 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237612567.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.431 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds