Wall clock time and date at job start Mon Mar 30 2020 01:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00374 * 2 1 4 4 C 1.50699 * 109.47600 * 293.95913 * 3 2 1 5 5 H 1.08004 * 119.99448 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00114 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99969 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 120.00293 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47368 * 90.00336 * 8 6 4 10 10 H 1.48500 * 109.47351 * 210.00351 * 8 6 4 11 11 H 1.48505 * 109.47124 * 330.00248 * 8 6 4 12 12 C 1.46897 * 111.00112 * 123.95948 * 2 1 3 13 13 C 1.50709 * 109.47225 * 66.04125 * 12 2 1 14 14 C 1.38825 * 120.75588 * 270.22211 * 13 12 2 15 15 C 1.38050 * 119.28846 * 180.29469 * 14 13 12 16 16 N 1.31966 * 120.82946 * 359.73156 * 15 14 13 17 17 C 1.32249 * 121.65364 * 359.97438 * 16 15 14 18 18 O 1.35672 * 119.68580 * 180.02562 * 17 16 15 19 19 C 1.42896 * 117.00001 * 0.02562 * 18 17 16 20 20 F 1.39896 * 109.47396 * 299.99956 * 19 18 17 21 21 F 1.39899 * 109.47334 * 60.00379 * 19 18 17 22 22 C 1.38373 * 120.75398 * 89.99886 * 13 12 2 23 23 H 1.09005 * 109.46430 * 296.04541 * 1 2 3 24 24 H 1.08996 * 109.46835 * 56.03784 * 1 2 3 25 25 H 1.08994 * 109.47459 * 176.04703 * 1 2 3 26 26 H 1.09000 * 109.46904 * 53.96058 * 3 2 1 27 27 H 1.08999 * 109.47395 * 173.95246 * 3 2 1 28 28 H 0.97001 * 120.00328 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47376 * 306.04536 * 12 2 1 30 30 H 1.08998 * 109.47435 * 186.04184 * 12 2 1 31 31 H 1.07999 * 120.36223 * 0.04777 * 14 13 12 32 32 H 1.07997 * 119.58537 * 179.75177 * 15 14 13 33 33 H 1.09003 * 109.46976 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.44944 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0472 -1.2983 5 1 1.0746 1.5113 -2.0487 6 6 2.0279 3.3491 -1.5287 7 7 1.7145 3.9391 -2.6616 8 14 3.0012 4.2757 -0.2312 9 1 4.4535 4.0622 -0.4556 10 1 2.6940 5.7256 -0.3235 11 1 2.6298 3.7758 1.1170 12 6 1.9955 -0.7661 1.1375 13 6 1.6369 -2.2206 0.9727 14 6 0.4480 -2.7212 1.4858 15 6 0.1527 -4.0598 1.3227 16 7 0.9823 -4.8623 0.6830 17 6 2.1211 -4.4216 0.1752 18 8 2.9442 -5.2818 -0.4755 19 6 2.5157 -6.6416 -0.5725 20 9 2.3560 -7.1730 0.7117 21 9 1.2963 -6.6987 -1.2559 22 6 2.4830 -3.0864 0.3025 23 1 -0.3632 0.4513 0.9234 24 1 -0.3633 0.5741 -0.8523 25 1 -0.3634 -1.0251 -0.0708 26 1 1.5613 1.9272 0.8310 27 1 3.0798 1.3443 0.1083 28 1 1.9892 4.8552 -2.8235 29 1 1.5612 -0.3874 2.0628 30 1 3.0798 -0.6613 1.1755 31 1 -0.2367 -2.0713 2.0104 32 1 -0.7689 -4.4552 1.7234 33 1 3.2633 -7.2202 -1.1152 34 1 3.4144 -2.7300 -0.1120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237612567.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:46 Heat of formation + Delta-G solvation = -124.122096 kcal Electronic energy + Delta-G solvation = -20542.428415 eV Core-core repulsion = 16917.539825 eV Total energy + Delta-G solvation = -3624.888590 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.99415 -48.13325 -41.66237 -39.29234 -38.10300 -34.90553 -33.70684 -31.75153 -29.96189 -28.60858 -27.07444 -25.76790 -24.38220 -23.02952 -21.90076 -19.76320 -19.26455 -18.91716 -18.79607 -17.36653 -17.03081 -16.69671 -16.55470 -16.26570 -15.87375 -15.79400 -15.25822 -14.87338 -14.80836 -14.47620 -14.43051 -14.04316 -13.60733 -13.50933 -13.43708 -13.22416 -13.01492 -12.89928 -12.48428 -12.33189 -12.13980 -11.88313 -11.49138 -10.78510 -10.72284 -10.69865 -9.71889 -9.05832 -8.26737 -6.30898 0.10778 0.14864 1.37793 1.39020 1.49350 1.53613 2.36161 2.63246 2.66739 3.06906 3.21748 3.36620 3.68067 3.73253 3.81863 3.89518 4.07841 4.13952 4.42626 4.49439 4.61786 4.67827 4.74823 4.84993 4.90438 5.03133 5.19472 5.22654 5.37259 5.53523 5.90020 5.95253 6.30287 6.61463 6.72700 6.75838 7.32764 8.90019 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.034066 B = 0.003762 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.732566 B = 7440.627025 C = 7615.113404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.545 5.545 3 C 0.172 3.828 4 C -0.518 4.518 5 H 0.035 0.965 6 C 0.007 3.993 7 N -0.950 5.950 8 Si 0.949 3.051 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.246 1.246 12 C 0.088 3.912 13 C 0.000 4.000 14 C -0.186 4.186 15 C 0.134 3.866 16 N -0.547 5.547 17 C 0.285 3.715 18 O -0.326 6.326 19 C 0.417 3.583 20 F -0.208 7.208 21 F -0.210 7.210 22 C -0.167 4.167 23 H 0.031 0.969 24 H 0.045 0.955 25 H 0.072 0.928 26 H -0.004 1.004 27 H 0.034 0.966 28 H 0.267 0.733 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.192 0.808 33 H 0.233 0.767 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -19.619 10.783 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.269 5.269 3 C 0.045 3.955 4 C -0.556 4.556 5 H 0.053 0.947 6 C -0.190 4.190 7 N -0.591 5.591 8 Si 0.773 3.227 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.170 1.170 12 C -0.039 4.039 13 C -0.008 4.008 14 C -0.206 4.206 15 C -0.022 4.022 16 N -0.269 5.269 17 C 0.108 3.892 18 O -0.239 6.239 19 C 0.328 3.672 20 F -0.190 7.190 21 F -0.192 7.192 22 C -0.188 4.188 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.014 0.986 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.178 0.822 32 H 0.209 0.791 33 H 0.249 0.751 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.539 -20.541 10.055 22.922 hybrid contribution -0.031 1.788 0.686 1.915 sum 1.507 -18.753 10.741 21.664 Atomic orbital electron populations 1.22252 0.87313 1.01133 1.00233 1.61810 1.08601 1.15025 1.41480 1.19976 0.95440 0.85210 0.94886 1.21262 1.34972 0.97540 1.01869 0.94701 1.25870 0.97021 0.98420 0.97716 1.70059 1.48633 1.13915 1.26480 0.85686 0.79345 0.77512 0.80204 1.19001 1.21024 1.16957 1.21142 1.01483 0.88419 0.92896 1.20126 0.93196 0.95145 0.92346 1.22244 0.97672 0.97229 1.03441 1.22865 0.97465 0.89619 0.92203 1.67365 1.04255 1.40867 1.14428 1.19745 0.88599 0.88515 0.92297 1.86780 1.45455 1.20250 1.71390 1.24091 0.84440 0.80768 0.77918 1.93059 1.96371 1.85966 1.43555 1.93066 1.50685 1.95790 1.79684 1.21064 1.03735 0.90191 1.03810 0.95086 0.93585 0.90909 0.98640 0.94838 0.92454 0.92031 0.89162 0.82201 0.79132 0.75116 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 8.99 127.69 1.15 2.55 16 2 N -0.54 -21.35 4.74 -931.66 -4.42 -25.77 16 3 C 0.17 7.84 3.79 85.56 0.32 8.16 16 4 C -0.52 -29.49 9.01 25.60 0.23 -29.26 16 5 H 0.03 2.24 7.37 -2.91 -0.02 2.22 16 6 C 0.01 0.39 5.47 84.65 0.46 0.86 16 7 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 8 Si 0.95 42.79 27.47 68.60 1.88 44.67 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.25 -10.13 6.54 99.48 0.65 -9.48 16 12 C 0.09 2.59 5.16 85.56 0.44 3.04 16 13 C 0.00 0.00 4.90 -19.69 -0.10 -0.09 16 14 C -0.19 -4.18 8.11 22.37 0.18 -4.00 16 15 C 0.13 3.00 11.18 84.63 0.95 3.94 16 16 N -0.55 -15.12 8.08 -308.95 -2.50 -17.61 16 17 C 0.29 8.12 7.19 84.79 0.61 8.73 16 18 O -0.33 -8.07 10.41 -89.89 -0.94 -9.01 16 19 C 0.42 7.78 6.06 113.37 0.69 8.47 16 20 F -0.21 -4.67 16.57 44.97 0.75 -3.92 16 21 F -0.21 -5.08 16.57 44.97 0.75 -4.33 16 22 C -0.17 -4.74 9.75 22.47 0.22 -4.52 16 23 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.05 1.98 6.76 -2.39 -0.02 1.97 16 25 H 0.07 2.28 6.17 -2.39 -0.01 2.27 16 26 H 0.00 -0.18 7.18 -2.39 -0.02 -0.20 16 27 H 0.03 1.48 7.36 -2.39 -0.02 1.46 16 28 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16 30 H 0.09 2.54 7.89 -2.39 -0.02 2.52 16 31 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.23 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -72.65 297.72 2.04 -70.61 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.06 Total: 6.28 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 5.15 Total: -2.12 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -6.62 Total: -102.19 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.94 Total: -9.01 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 1.49 Total: -8.25 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Total: -72.65 2.04 -70.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237612567.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.512 kcal (2) G-P(sol) polarization free energy of solvation -72.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds