Wall clock time and date at job start Mon Mar 30 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38704 * 120.00066 * 2 1 4 4 C 1.39350 * 119.52961 * 0.02562 * 3 2 1 5 5 C 1.37950 * 119.32391 * 179.97438 * 4 3 2 6 6 C 1.40215 * 118.40589 * 0.02562 * 5 4 3 7 7 C 1.47783 * 120.49172 * 180.02562 * 6 5 4 8 8 C 1.40045 * 119.88996 * 309.68049 * 7 6 5 9 9 C 1.36193 * 120.11136 * 179.72223 * 8 7 6 10 10 C 1.40967 * 119.88473 * 0.54971 * 9 8 7 11 11 C 1.40971 * 120.10624 * 179.70212 * 10 9 8 12 12 H 1.08003 * 119.99976 * 155.01000 * 11 10 9 13 13 C 1.39950 * 120.00188 * 335.00709 * 11 10 9 14 14 N 1.30833 * 119.99823 * 342.11138 * 13 11 10 15 15 Si 1.86801 * 119.99909 * 162.11041 * 13 11 10 16 16 H 1.48502 * 109.47062 * 94.65259 * 15 13 11 17 17 H 1.48500 * 109.47102 * 214.64930 * 15 13 11 18 18 H 1.48500 * 109.47191 * 334.65199 * 15 13 11 19 19 C 1.40964 * 119.78406 * 359.72025 * 10 9 8 20 20 C 1.36188 * 119.88576 * 0.02562 * 19 10 9 21 21 C 1.39892 * 119.01305 * 359.97147 * 6 5 4 22 22 F 1.35100 * 119.71363 * 180.02562 * 21 6 5 23 23 N 1.31915 * 120.57763 * 0.02736 * 21 6 5 24 24 H 1.08997 * 109.47095 * 59.99745 * 1 2 3 25 25 H 1.08998 * 109.47342 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46553 * 299.99630 * 1 2 3 27 27 H 0.97005 * 120.00049 * 180.02562 * 2 1 3 28 28 H 1.08006 * 120.33859 * 359.72401 * 4 3 2 29 29 H 1.08001 * 120.79943 * 179.97438 * 5 4 3 30 30 H 1.07995 * 119.94313 * 0.02562 * 8 7 6 31 31 H 1.07995 * 120.05610 * 180.25379 * 9 8 7 32 32 H 0.96999 * 119.99901 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.05839 * 180.02562 * 19 10 9 34 34 H 1.08007 * 119.94781 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1586 1.2012 0.0000 4 6 1.4519 2.4023 0.0005 5 6 2.1460 3.5944 0.0011 6 6 3.5474 3.5504 0.0005 7 6 4.3370 4.7997 0.0016 8 6 4.0541 5.8048 -0.9316 9 6 4.7751 6.9602 -0.9310 10 6 5.8152 7.1386 0.0036 11 6 6.5686 8.3301 0.0044 12 1 7.0617 8.6567 0.9081 13 6 6.6778 9.0897 -1.1659 14 7 6.3961 8.5507 -2.3243 15 14 7.2256 10.8732 -1.0741 16 1 8.6913 10.9530 -1.2991 17 1 6.5211 11.6618 -2.1167 18 1 6.9001 11.4227 0.2666 19 6 6.0997 6.1215 0.9372 20 6 5.3696 4.9719 0.9319 21 6 4.1872 2.3063 0.0000 22 9 5.5369 2.2474 0.0000 23 7 3.4840 1.1902 -0.0004 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.9501 -0.8401 -0.0004 28 1 0.3719 2.3998 -0.0035 29 1 1.6225 4.5391 0.0011 30 1 3.2597 5.6655 -1.6498 31 1 4.5535 7.7365 -1.6484 32 1 6.4721 9.0771 -3.1355 33 1 6.8953 6.2536 1.6555 34 1 5.5864 4.1921 1.6470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239409350.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:39 Heat of formation + Delta-G solvation = 13.088729 kcal Electronic energy + Delta-G solvation = -19463.341401 eV Core-core repulsion = 16275.171944 eV Total energy + Delta-G solvation = -3188.169458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.36498 -39.80136 -37.58262 -35.60519 -33.90567 -32.36503 -30.52291 -29.52506 -28.53587 -26.57462 -24.67912 -23.18745 -22.14570 -20.83239 -20.15793 -17.88993 -17.44184 -17.31098 -15.84485 -15.56226 -15.44428 -15.08962 -14.84724 -14.37600 -13.98160 -13.39236 -13.17393 -13.01144 -12.68076 -12.62103 -12.46187 -12.30099 -12.01840 -11.71437 -11.15885 -11.07569 -10.88791 -10.60780 -9.92834 -9.86073 -9.43109 -9.37259 -9.34769 -9.13615 -7.82485 -7.57031 -7.02592 -6.83722 -4.40185 1.41142 1.60671 2.71721 3.02393 3.04861 3.07014 3.11663 3.16181 3.85736 4.07153 4.30612 4.55067 4.93021 5.07623 5.17580 5.25182 5.40772 5.47674 5.65339 5.71014 6.10072 6.24648 6.27644 6.30856 6.59118 6.79578 6.92149 6.98382 7.10855 7.22106 7.28725 7.52009 7.57529 7.84755 7.98861 8.05938 8.18602 8.22220 8.55337 8.79421 8.90567 10.06359 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042995 B = 0.003839 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.078728 B = 7291.275082 C = 7607.650690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.735 5.735 3 C 0.405 3.595 4 C -0.243 4.243 5 C -0.021 4.021 6 C -0.104 4.104 7 C -0.199 4.199 8 C -0.073 4.073 9 C -0.171 4.171 10 C 0.119 3.881 11 C -0.452 4.452 12 H 0.080 0.920 13 C 0.075 3.925 14 N -0.782 5.782 15 Si 0.909 3.091 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.259 1.259 19 C -0.228 4.228 20 C -0.059 4.059 21 C 0.336 3.664 22 F -0.108 7.108 23 N -0.575 5.575 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.403 0.597 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.283 0.717 33 H 0.094 0.906 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 -9.010 2.005 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.369 5.369 3 C 0.170 3.830 4 C -0.268 4.268 5 C -0.047 4.047 6 C -0.110 4.110 7 C -0.201 4.201 8 C -0.092 4.092 9 C -0.191 4.191 10 C 0.116 3.884 11 C -0.481 4.481 12 H 0.099 0.901 13 C -0.144 4.144 14 N -0.406 5.406 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.183 1.183 19 C -0.247 4.247 20 C -0.077 4.077 21 C 0.182 3.818 22 F -0.087 7.087 23 N -0.298 5.298 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.237 0.763 28 H 0.149 0.851 29 H 0.158 0.842 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.132 -9.693 1.739 14.129 hybrid contribution 0.370 1.043 -0.140 1.115 sum -9.762 -8.650 1.600 13.141 Atomic orbital electron populations 1.21538 0.79071 1.02477 1.01375 1.44053 1.05492 1.05121 1.82279 1.17700 0.86158 0.86580 0.92520 1.21260 1.00582 0.91456 1.13454 1.21401 0.92380 0.97933 0.92956 1.19454 0.93559 0.92661 1.05326 1.17701 1.03697 0.94317 1.04365 1.20402 0.98544 0.93800 0.96442 1.20951 0.97429 0.97691 1.03000 1.17698 0.89652 0.91223 0.89783 1.19634 1.26849 1.04876 0.96719 0.90144 1.25991 0.93310 1.00393 0.94752 1.69840 1.34651 1.37283 0.98867 0.86279 0.79313 0.81594 0.79488 1.19443 1.19918 1.18279 1.20648 1.03434 0.95231 1.05414 1.20302 0.94387 0.96457 0.96556 1.17879 0.78137 0.88365 0.97371 1.91602 1.27251 1.96809 1.93024 1.66033 1.07503 1.31993 1.24303 0.92717 0.90618 0.92711 0.76255 0.85057 0.84194 0.89353 0.86423 0.90610 0.88784 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 9.91 59.85 0.59 1.32 16 2 N -0.74 -8.22 5.87 -67.19 -0.39 -8.61 16 3 C 0.41 6.15 7.64 -155.10 -1.19 4.97 16 4 C -0.24 -3.42 9.30 -39.27 -0.37 -3.79 16 5 C -0.02 -0.35 9.66 -38.94 -0.38 -0.72 16 6 C -0.10 -2.06 5.48 -104.63 -0.57 -2.63 16 7 C -0.20 -4.48 5.36 -104.64 -0.56 -5.04 16 8 C -0.07 -1.70 9.47 -39.64 -0.38 -2.07 16 9 C -0.17 -4.37 8.62 -39.28 -0.34 -4.71 16 10 C 0.12 3.13 5.57 -106.80 -0.59 2.54 16 11 C -0.45 -11.72 9.02 -37.91 -0.34 -12.06 16 12 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 13 C 0.07 1.83 5.13 -17.34 -0.09 1.74 16 14 N -0.78 -19.75 10.98 55.55 0.61 -19.14 16 15 Si 0.91 18.07 29.60 -169.99 -5.03 13.04 16 16 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 19 C -0.23 -5.62 9.73 -39.29 -0.38 -6.01 16 20 C -0.06 -1.36 8.80 -39.64 -0.35 -1.71 16 21 C 0.34 6.73 8.30 -16.90 -0.14 6.59 16 22 F -0.11 -2.29 15.92 2.25 0.04 -2.26 16 23 N -0.58 -10.52 10.39 -12.42 -0.13 -10.65 16 24 H 0.05 0.38 7.91 -51.93 -0.41 -0.03 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.38 7.92 -51.93 -0.41 -0.04 16 27 H 0.40 4.12 8.95 -40.82 -0.37 3.75 16 28 H 0.13 1.41 6.67 -52.48 -0.35 1.06 16 29 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.09 1.84 8.05 -52.49 -0.42 1.42 16 31 H 0.12 3.06 6.18 -52.49 -0.32 2.74 16 32 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 33 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.09 1.88 7.78 -52.48 -0.41 1.47 16 LS Contribution 299.96 15.07 4.52 4.52 Total: -1.00 -28.84 299.96 -8.98 -37.82 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.51 Total: 6.86 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -5.08 Total: -21.59 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.09 Total: -38.39 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.84 -8.98 -37.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239409350.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.910 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds