Wall clock time and date at job start Mon Mar 30 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38704 * 120.00066 * 2 1 4 4 C 1.39350 * 119.52961 * 0.02562 * 3 2 1 5 5 C 1.37950 * 119.32391 * 179.97438 * 4 3 2 6 6 C 1.40215 * 118.40589 * 0.02562 * 5 4 3 7 7 C 1.47783 * 120.49172 * 180.02562 * 6 5 4 8 8 C 1.40045 * 119.88996 * 309.68049 * 7 6 5 9 9 C 1.36193 * 120.11136 * 179.72223 * 8 7 6 10 10 C 1.40967 * 119.88473 * 0.54971 * 9 8 7 11 11 C 1.40971 * 120.10624 * 179.70212 * 10 9 8 12 12 H 1.08003 * 119.99976 * 155.01000 * 11 10 9 13 13 C 1.39950 * 120.00188 * 335.00709 * 11 10 9 14 14 N 1.30833 * 119.99823 * 342.11138 * 13 11 10 15 15 Si 1.86801 * 119.99909 * 162.11041 * 13 11 10 16 16 H 1.48502 * 109.47062 * 94.65259 * 15 13 11 17 17 H 1.48500 * 109.47102 * 214.64930 * 15 13 11 18 18 H 1.48500 * 109.47191 * 334.65199 * 15 13 11 19 19 C 1.40964 * 119.78406 * 359.72025 * 10 9 8 20 20 C 1.36188 * 119.88576 * 0.02562 * 19 10 9 21 21 C 1.39892 * 119.01305 * 359.97147 * 6 5 4 22 22 F 1.35100 * 119.71363 * 180.02562 * 21 6 5 23 23 N 1.31915 * 120.57763 * 0.02736 * 21 6 5 24 24 H 1.08997 * 109.47095 * 59.99745 * 1 2 3 25 25 H 1.08998 * 109.47342 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46553 * 299.99630 * 1 2 3 27 27 H 0.97005 * 120.00049 * 180.02562 * 2 1 3 28 28 H 1.08006 * 120.33859 * 359.72401 * 4 3 2 29 29 H 1.08001 * 120.79943 * 179.97438 * 5 4 3 30 30 H 1.07995 * 119.94313 * 0.02562 * 8 7 6 31 31 H 1.07995 * 120.05610 * 180.25379 * 9 8 7 32 32 H 0.96999 * 119.99901 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.05839 * 180.02562 * 19 10 9 34 34 H 1.08007 * 119.94781 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1586 1.2012 0.0000 4 6 1.4519 2.4023 0.0005 5 6 2.1460 3.5944 0.0011 6 6 3.5474 3.5504 0.0005 7 6 4.3370 4.7997 0.0016 8 6 4.0541 5.8048 -0.9316 9 6 4.7751 6.9602 -0.9310 10 6 5.8152 7.1386 0.0036 11 6 6.5686 8.3301 0.0044 12 1 7.0617 8.6567 0.9081 13 6 6.6778 9.0897 -1.1659 14 7 6.3961 8.5507 -2.3243 15 14 7.2256 10.8732 -1.0741 16 1 8.6913 10.9530 -1.2991 17 1 6.5211 11.6618 -2.1167 18 1 6.9001 11.4227 0.2666 19 6 6.0997 6.1215 0.9372 20 6 5.3696 4.9719 0.9319 21 6 4.1872 2.3063 0.0000 22 9 5.5369 2.2474 0.0000 23 7 3.4840 1.1902 -0.0004 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.9501 -0.8401 -0.0004 28 1 0.3719 2.3998 -0.0035 29 1 1.6225 4.5391 0.0011 30 1 3.2597 5.6655 -1.6498 31 1 4.5535 7.7365 -1.6484 32 1 6.4721 9.0771 -3.1355 33 1 6.8953 6.2536 1.6555 34 1 5.5864 4.1921 1.6470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239409350.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:39 Heat of formation + Delta-G solvation = -2.912960 kcal Electronic energy + Delta-G solvation = -19464.035287 eV Core-core repulsion = 16275.171944 eV Total energy + Delta-G solvation = -3188.863343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.91199 -41.09060 -39.36634 -36.73762 -35.61373 -33.79407 -32.04677 -31.38825 -30.01046 -27.73434 -26.16388 -24.53067 -23.56510 -22.64971 -21.84543 -19.28917 -19.04423 -18.69719 -17.45680 -17.04645 -16.92831 -16.60404 -15.87517 -15.67477 -15.27876 -15.19336 -14.68387 -14.40882 -14.11603 -14.06164 -13.79391 -13.71036 -13.49215 -12.95978 -12.82772 -12.77616 -12.59726 -12.17570 -11.62976 -11.37457 -11.13398 -10.99857 -10.66212 -10.58884 -9.48353 -9.36680 -8.70830 -8.43194 -6.32395 0.04066 0.28927 1.00809 1.19959 1.39640 1.50510 1.56435 2.02741 2.20538 2.63862 2.81841 3.05819 3.68904 3.83421 3.94705 4.17075 4.28814 4.46398 4.47326 4.54550 4.73915 4.80406 4.95882 5.00121 5.03487 5.12372 5.26051 5.33324 5.40144 5.52767 5.70057 5.98581 6.04765 6.08222 6.18943 6.34246 6.47109 6.65572 6.89603 6.99713 7.02612 8.28499 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042995 B = 0.003839 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.078728 B = 7291.275082 C = 7607.650690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.724 5.724 3 C 0.408 3.592 4 C -0.226 4.226 5 C -0.013 4.013 6 C -0.139 4.139 7 C -0.184 4.184 8 C -0.077 4.077 9 C -0.190 4.190 10 C 0.088 3.912 11 C -0.491 4.491 12 H 0.078 0.922 13 C 0.036 3.964 14 N -0.817 5.817 15 Si 0.985 3.015 16 H -0.263 1.263 17 H -0.263 1.263 18 H -0.257 1.257 19 C -0.244 4.244 20 C -0.068 4.068 21 C 0.317 3.683 22 F -0.127 7.127 23 N -0.597 5.597 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.408 0.592 28 H 0.175 0.825 29 H 0.159 0.841 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.291 0.709 33 H 0.097 0.903 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 -10.092 1.945 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.357 5.357 3 C 0.170 3.830 4 C -0.251 4.251 5 C -0.038 4.038 6 C -0.145 4.145 7 C -0.186 4.186 8 C -0.095 4.095 9 C -0.209 4.209 10 C 0.085 3.915 11 C -0.520 4.520 12 H 0.096 0.904 13 C -0.180 4.180 14 N -0.442 5.442 15 Si 0.805 3.195 16 H -0.188 1.188 17 H -0.187 1.187 18 H -0.181 1.181 19 C -0.263 4.263 20 C -0.087 4.087 21 C 0.165 3.835 22 F -0.106 7.106 23 N -0.322 5.322 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.243 0.757 28 H 0.192 0.808 29 H 0.177 0.823 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.896 -10.829 1.685 16.924 hybrid contribution 0.965 1.014 -0.096 1.403 sum -11.931 -9.815 1.589 15.531 Atomic orbital electron populations 1.21906 0.76224 1.04936 1.02281 1.44388 1.07192 1.04010 1.80061 1.18226 0.85499 0.88578 0.90670 1.21638 1.02500 0.89952 1.10971 1.21638 0.90856 0.99795 0.91487 1.19347 0.94956 0.91099 1.09114 1.17984 1.02816 0.95091 1.02675 1.20639 0.98789 0.93219 0.96866 1.20948 0.98185 0.98543 1.03227 1.18021 0.90533 0.92108 0.90794 1.19855 1.28469 1.06111 0.97559 0.90379 1.26831 0.92907 1.04493 0.93813 1.69883 1.35638 1.39050 0.99625 0.85153 0.78987 0.75751 0.79592 1.18816 1.18747 1.18109 1.20811 1.04134 0.95712 1.05676 1.20508 0.94779 0.96181 0.97213 1.17997 0.77700 0.89161 0.98664 1.91545 1.28721 1.96954 1.93383 1.66082 1.09061 1.31241 1.25817 0.91704 0.87702 0.91627 0.75701 0.80775 0.82318 0.87009 0.87636 0.89818 0.88485 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 9.91 127.77 1.27 2.09 16 2 N -0.72 -13.28 5.87 -366.50 -2.15 -15.43 16 3 C 0.41 11.07 7.64 133.17 1.02 12.08 16 4 C -0.23 -5.43 9.30 22.47 0.21 -5.22 16 5 C -0.01 -0.37 9.66 22.68 0.22 -0.15 16 6 C -0.14 -5.37 5.48 -19.87 -0.11 -5.48 16 7 C -0.18 -8.36 5.36 -19.87 -0.11 -8.46 16 8 C -0.08 -3.60 9.47 22.23 0.21 -3.39 16 9 C -0.19 -10.02 8.62 22.46 0.19 -9.83 16 10 C 0.09 4.84 5.57 -21.27 -0.12 4.72 16 11 C -0.49 -26.63 9.02 23.35 0.21 -26.42 16 12 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 13 C 0.04 1.79 5.13 85.26 0.44 2.22 16 14 N -0.82 -42.50 10.98 21.83 0.24 -42.26 16 15 Si 0.99 37.65 29.60 68.60 2.03 39.68 16 16 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 17 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 18 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 19 C -0.24 -12.59 9.73 22.46 0.22 -12.37 16 20 C -0.07 -3.28 8.80 22.23 0.20 -3.08 16 21 C 0.32 12.63 8.30 85.08 0.71 13.34 16 22 F -0.13 -5.53 15.92 44.97 0.72 -4.82 16 23 N -0.60 -21.03 10.39 -193.20 -2.01 -23.04 16 24 H 0.06 0.54 7.91 -2.39 -0.02 0.52 16 25 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.07 0.53 7.92 -2.39 -0.02 0.52 16 27 H 0.41 6.94 8.95 -92.70 -0.83 6.12 16 28 H 0.17 2.67 6.67 -2.91 -0.02 2.65 16 29 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.11 4.59 8.05 -2.91 -0.02 4.57 16 31 H 0.11 5.74 6.18 -2.91 -0.02 5.72 16 32 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 33 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 34 H 0.10 4.38 7.78 -2.91 -0.02 4.35 16 Total: -1.00 -65.76 299.96 3.69 -62.07 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.31 Total: 23.72 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 4.55 Total: -39.93 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.92 Total: -80.72 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.72 Total: -4.82 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -65.76 3.69 -62.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239409350.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.161 kcal (2) G-P(sol) polarization free energy of solvation -65.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds