Wall clock time and date at job start Mon Mar 30 2020 01:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38709 * 119.99908 * 2 1 4 4 C 1.39346 * 119.52224 * 359.97438 * 3 2 1 5 5 C 1.37937 * 119.32367 * 179.97438 * 4 3 2 6 6 C 1.40254 * 118.40808 * 0.02562 * 5 4 3 7 7 C 1.47673 * 120.50549 * 179.97438 * 6 5 4 8 8 C 1.39295 * 120.34650 * 64.99743 * 7 6 5 9 9 C 1.37980 * 119.97570 * 180.02562 * 8 7 6 10 10 C 1.38989 * 120.69144 * 0.02562 * 9 8 7 11 11 C 1.36388 * 120.71053 * 359.95324 * 10 9 8 12 12 C 1.40762 * 119.99231 * 0.30488 * 11 10 9 13 13 C 1.40826 * 120.34155 * 179.71957 * 12 11 10 14 14 H 1.07998 * 120.00372 * 205.29007 * 13 12 11 15 15 C 1.40019 * 119.99364 * 25.28689 * 13 12 11 16 16 N 1.30807 * 120.00359 * 15.51837 * 15 13 12 17 17 Si 1.86803 * 119.99727 * 195.51318 * 15 13 12 18 18 H 1.48498 * 109.47158 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47148 * 120.00146 * 17 15 13 20 20 H 1.48498 * 109.47422 * 240.00313 * 17 15 13 21 21 C 1.39948 * 118.99492 * 0.25161 * 6 5 4 22 22 F 1.35106 * 119.71123 * 179.72555 * 21 6 5 23 23 N 1.31891 * 120.57438 * 359.47397 * 21 6 5 24 24 H 1.09006 * 109.47042 * 300.00144 * 1 2 3 25 25 H 1.09000 * 109.47189 * 59.99365 * 1 2 3 26 26 H 1.08993 * 109.47487 * 179.97438 * 1 2 3 27 27 H 0.96993 * 119.99323 * 179.97438 * 2 1 3 28 28 H 1.08006 * 120.34414 * 0.02562 * 4 3 2 29 29 H 1.08008 * 120.80245 * 179.97438 * 5 4 3 30 30 H 1.08006 * 120.01180 * 0.02562 * 8 7 6 31 31 H 1.08001 * 119.65645 * 180.02562 * 9 8 7 32 32 H 1.07997 * 119.64832 * 179.97438 * 10 9 8 33 33 H 1.08000 * 120.00318 * 180.02562 * 11 10 9 34 34 H 0.97004 * 120.00120 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1586 1.2013 0.0000 4 6 1.4518 2.4022 -0.0005 5 6 2.1456 3.5944 0.0000 6 6 3.5474 3.5506 0.0005 7 6 4.3364 4.7989 0.0005 8 6 4.2825 5.6654 1.0898 9 6 5.0225 6.8300 1.0815 10 6 5.8256 7.1525 -0.0061 11 6 5.8997 6.3242 -1.0871 12 6 5.1530 5.1313 -1.1120 13 6 5.2194 4.2736 -2.2270 14 1 4.3961 3.6105 -2.4481 15 6 6.3530 4.2805 -3.0489 16 7 7.4596 4.8398 -2.6322 17 14 6.2850 3.4908 -4.7404 18 1 4.9286 2.9324 -4.9719 19 1 6.5824 4.5127 -5.7761 20 1 7.2897 2.4001 -4.8183 21 6 4.1872 2.3059 -0.0049 22 9 5.5370 2.2469 -0.0101 23 7 3.4841 1.1901 0.0000 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.9499 -0.8400 0.0004 28 1 0.3717 2.3996 -0.0005 29 1 1.6219 4.5390 -0.0008 30 1 3.6618 5.4259 1.9405 31 1 4.9772 7.4980 1.9289 32 1 6.3974 8.0686 0.0051 33 1 6.5278 6.5858 -1.9259 34 1 8.2450 4.8443 -3.2015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239420498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:41 Heat of formation + Delta-G solvation = 0.120520 kcal Electronic energy + Delta-G solvation = -20287.830109 eV Core-core repulsion = 17099.098308 eV Total energy + Delta-G solvation = -3188.731801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.70799 -41.02126 -39.27538 -36.54592 -35.55616 -33.90300 -32.10021 -31.31941 -29.47885 -27.45314 -26.61517 -24.38443 -23.61108 -22.67707 -21.57974 -19.22526 -18.92766 -18.59699 -17.48355 -16.89486 -16.74944 -16.51484 -15.90325 -15.72561 -15.21149 -15.15069 -14.64877 -14.41554 -14.33107 -13.95042 -13.63263 -13.49482 -13.24833 -13.04456 -12.84195 -12.82583 -12.47129 -12.17940 -11.61977 -11.37257 -11.07865 -10.92829 -10.61543 -10.48960 -9.29520 -9.27494 -8.68447 -8.39444 -6.30827 0.19660 0.40584 0.99171 1.16369 1.31380 1.44523 1.49023 2.09612 2.16729 2.74276 2.84323 3.17824 3.71058 3.91602 4.06471 4.26473 4.37606 4.50230 4.54573 4.69520 4.74748 4.86903 4.95465 4.99450 5.10084 5.13794 5.32473 5.35204 5.51397 5.64814 5.71497 6.04570 6.11656 6.13118 6.23666 6.39691 6.51447 6.71062 6.94942 7.05625 7.09704 8.31487 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.007602 C = 0.005747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.931281 B = 3682.147630 C = 4870.761582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.726 5.726 3 C 0.406 3.594 4 C -0.233 4.233 5 C -0.014 4.014 6 C -0.131 4.131 7 C -0.185 4.185 8 C -0.077 4.077 9 C -0.239 4.239 10 C -0.108 4.108 11 C -0.185 4.185 12 C 0.102 3.898 13 C -0.469 4.469 14 H 0.060 0.940 15 C 0.038 3.962 16 N -0.818 5.818 17 Si 0.966 3.034 18 H -0.264 1.264 19 H -0.255 1.255 20 H -0.270 1.270 21 C 0.332 3.668 22 F -0.127 7.127 23 N -0.605 5.605 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.406 0.594 28 H 0.175 0.825 29 H 0.159 0.841 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.231 -5.683 2.874 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.359 5.359 3 C 0.169 3.831 4 C -0.257 4.257 5 C -0.039 4.039 6 C -0.137 4.137 7 C -0.187 4.187 8 C -0.095 4.095 9 C -0.258 4.258 10 C -0.126 4.126 11 C -0.205 4.205 12 C 0.099 3.901 13 C -0.498 4.498 14 H 0.078 0.922 15 C -0.177 4.177 16 N -0.444 5.444 17 Si 0.788 3.212 18 H -0.188 1.188 19 H -0.179 1.179 20 H -0.195 1.195 21 C 0.180 3.820 22 F -0.106 7.106 23 N -0.330 5.330 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.241 0.759 28 H 0.192 0.808 29 H 0.177 0.823 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.727 -6.405 2.808 14.522 hybrid contribution 0.888 0.061 -0.793 1.193 sum -11.839 -6.345 2.015 13.582 Atomic orbital electron populations 1.21886 0.76240 1.04843 1.02201 1.44361 1.07152 1.03923 1.80459 1.18242 0.85497 0.88629 0.90722 1.21583 1.02320 0.89984 1.11835 1.21653 0.90869 0.99711 0.91706 1.19250 0.94678 0.91503 1.08273 1.18561 1.07834 0.95934 0.96354 1.20876 0.98467 0.93950 0.96180 1.20645 1.04873 1.00092 1.00229 1.20767 0.98603 0.98729 0.94507 1.21069 1.04433 0.95452 0.99525 1.17861 0.89654 0.91337 0.91209 1.19452 1.02025 1.19388 1.08958 0.92196 1.26629 0.93968 0.94480 1.02620 1.69857 1.01579 1.35607 1.37384 0.85391 0.79279 0.78886 0.77666 1.18797 1.17903 1.19462 1.18118 0.77655 0.89275 0.96909 1.91559 1.29014 1.96945 1.93065 1.66062 1.09154 1.31568 1.26234 0.91510 0.91976 0.87701 0.75879 0.80800 0.82314 0.86558 0.86182 0.87277 0.87882 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 9.91 127.77 1.27 2.41 16 2 N -0.73 -16.37 5.87 -366.49 -2.15 -18.52 16 3 C 0.41 13.07 7.64 133.17 1.02 14.09 16 4 C -0.23 -6.62 9.30 22.47 0.21 -6.41 16 5 C -0.01 -0.48 9.89 22.69 0.22 -0.26 16 6 C -0.13 -5.80 4.40 -19.88 -0.09 -5.89 16 7 C -0.18 -9.08 5.08 -19.61 -0.10 -9.18 16 8 C -0.08 -3.37 9.74 22.46 0.22 -3.15 16 9 C -0.24 -10.32 10.03 22.39 0.22 -10.10 16 10 C -0.11 -5.04 9.96 22.02 0.22 -4.82 16 11 C -0.19 -9.93 8.63 22.46 0.19 -9.73 16 12 C 0.10 5.59 5.47 -21.11 -0.12 5.47 16 13 C -0.47 -26.11 7.51 23.34 0.18 -25.94 16 14 H 0.06 3.38 7.10 -2.91 -0.02 3.36 16 15 C 0.04 2.02 5.18 85.28 0.44 2.47 16 16 N -0.82 -44.35 10.87 21.84 0.24 -44.11 16 17 Si 0.97 40.76 29.59 68.60 2.03 42.79 16 18 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 21 C 0.33 15.69 7.65 85.10 0.65 16.34 16 22 F -0.13 -6.80 16.18 44.97 0.73 -6.07 16 23 N -0.61 -25.13 10.39 -193.16 -2.01 -27.14 16 24 H 0.07 0.72 7.91 -2.38 -0.02 0.70 16 25 H 0.06 0.74 7.91 -2.39 -0.02 0.72 16 26 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.41 8.67 8.95 -92.71 -0.83 7.84 16 28 H 0.17 3.31 6.67 -2.91 -0.02 3.29 16 29 H 0.16 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 32 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.10 5.76 6.12 -2.91 -0.02 5.74 16 34 H 0.29 14.08 8.30 -92.70 -0.77 13.31 16 Total: -1.00 -68.16 297.93 3.69 -64.47 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.31 Total: 23.28 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 4.54 Total: -34.70 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -3.92 Total: -89.77 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.73 Total: -6.07 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -68.16 3.69 -64.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239420498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.595 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds