Wall clock time and date at job start Mon Mar 30 2020 01:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35645 * 116.99915 * 2 1 4 4 N 1.32273 * 119.56001 * 0.29455 * 3 2 1 5 5 C 1.31720 * 121.88430 * 180.33818 * 4 3 2 6 6 C 1.39663 * 120.75602 * 359.65617 * 5 4 3 7 7 C 1.47654 * 120.48192 * 180.02562 * 6 5 4 8 8 N 1.32915 * 120.25578 * 316.25654 * 7 6 5 9 9 C 1.31992 * 120.07140 * 179.97438 * 8 7 6 10 10 C 1.39201 * 120.60156 * 0.02562 * 9 8 7 11 11 N 1.31606 * 120.51775 * 359.97438 * 10 9 8 12 12 C 1.33983 * 119.90465 * 359.70129 * 11 10 9 13 13 C 1.40732 * 120.29556 * 180.27419 * 12 11 10 14 14 H 1.08005 * 119.99982 * 163.06460 * 13 12 11 15 15 C 1.40141 * 120.00039 * 343.07219 * 13 12 11 16 16 N 1.30694 * 120.00270 * 170.64347 * 15 13 12 17 17 Si 1.86808 * 119.99842 * 350.63677 * 15 13 12 18 18 H 1.48503 * 109.46798 * 84.72682 * 17 15 13 19 19 H 1.48502 * 109.47001 * 204.72230 * 17 15 13 20 20 H 1.48500 * 109.47223 * 324.72734 * 17 15 13 21 21 C 1.40260 * 119.03905 * 0.02562 * 6 5 4 22 22 C 1.38551 * 118.29595 * 0.02562 * 21 6 5 23 23 N 1.39940 * 120.42985 * 180.02562 * 22 21 6 24 24 H 1.08998 * 109.47348 * 59.99682 * 1 2 3 25 25 H 1.09002 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47139 * 299.99777 * 1 2 3 27 27 H 1.08006 * 119.62465 * 179.67866 * 5 4 3 28 28 H 1.08002 * 119.70065 * 179.97438 * 9 8 7 29 29 H 1.08001 * 119.74326 * 179.97438 * 10 9 8 30 30 H 0.96999 * 120.00403 * 179.97438 * 16 15 13 31 31 H 1.08009 * 120.85300 * 179.97438 * 21 6 5 32 32 H 0.96996 * 119.99973 * 0.02562 * 23 22 21 33 33 H 0.96997 * 120.00173 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 7 1.3158 2.3124 0.0059 5 6 1.8657 3.5093 -0.0004 6 6 3.2544 3.6573 -0.0065 7 6 3.8643 5.0019 -0.0131 8 7 3.3824 5.9521 -0.8078 9 6 3.9301 7.1530 -0.8103 10 6 5.0144 7.4391 0.0145 11 7 5.5104 6.5159 0.8106 12 6 4.9662 5.2918 0.8344 13 6 5.4863 4.3001 1.6867 14 1 4.9011 3.4208 1.9125 15 6 6.7635 4.4534 2.2427 16 7 7.1746 3.6318 3.1723 17 14 7.8786 5.8322 1.6550 18 1 7.5561 7.0789 2.3948 19 1 9.2954 5.4624 1.9023 20 1 7.6706 6.0515 0.2011 21 6 4.0614 2.5100 -0.0064 22 6 3.4414 1.2710 -0.0007 23 7 4.2033 0.0972 0.0001 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.2354 4.3864 -0.0005 28 1 3.5339 7.9205 -1.4587 29 1 5.4521 8.4263 0.0009 30 1 8.0588 3.7377 3.5568 31 1 5.1384 2.5904 -0.0115 32 1 5.1719 0.1478 -0.0029 33 1 3.7628 -0.7670 0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239623935.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:02 Heat of formation + Delta-G solvation = 29.194471 kcal Electronic energy + Delta-G solvation = -20261.342905 eV Core-core repulsion = 17093.791806 eV Total energy + Delta-G solvation = -3167.551099 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17866 -39.27048 -37.28227 -34.66315 -34.25742 -33.03087 -32.03055 -29.45302 -28.52542 -27.08967 -26.07625 -23.76557 -22.65448 -21.89224 -20.98161 -18.13165 -17.77848 -17.24946 -16.52550 -16.20947 -15.60368 -15.37781 -15.05839 -14.76557 -14.12912 -13.75273 -13.41763 -13.09820 -13.04214 -12.90020 -12.39846 -11.91305 -11.72864 -11.51241 -11.30433 -11.03496 -10.91321 -10.81013 -10.54036 -9.95813 -9.60627 -9.39087 -9.18133 -8.72423 -7.97162 -7.65551 -7.19520 -6.87627 -4.95736 1.54124 2.00856 2.27472 2.61220 3.24975 3.32223 3.39091 3.49045 4.12412 4.20373 4.31791 4.47897 5.03011 5.14425 5.26609 5.40995 5.53651 5.57140 5.70946 5.79952 5.81952 5.90099 5.99276 6.18481 6.28162 6.50157 6.63449 6.85058 6.97312 7.11729 7.37386 7.49090 7.83933 7.91619 8.11109 8.15208 8.22141 8.49741 8.79172 9.24407 9.69361 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.006663 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.321161 B = 4201.324750 C = 5266.583863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.320 6.320 3 C 0.230 3.770 4 N -0.506 5.506 5 C 0.087 3.913 6 C -0.014 4.014 7 C 0.004 3.996 8 N -0.402 5.402 9 C -0.111 4.111 10 C 0.109 3.891 11 N -0.537 5.537 12 C 0.206 3.794 13 C -0.382 4.382 14 H 0.112 0.888 15 C 0.080 3.920 16 N -0.777 5.777 17 Si 0.992 3.008 18 H -0.269 1.269 19 H -0.321 1.321 20 H -0.266 1.266 21 C -0.107 4.107 22 C 0.157 3.843 23 N -0.871 5.871 24 H 0.053 0.947 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.153 0.847 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.294 0.706 31 H 0.149 0.851 32 H 0.398 0.602 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 -4.316 -4.074 7.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.229 6.229 3 C 0.046 3.954 4 N -0.228 5.228 5 C -0.071 4.071 6 C -0.018 4.018 7 C -0.145 4.145 8 N -0.114 5.114 9 C -0.271 4.271 10 C -0.058 4.058 11 N -0.258 5.258 12 C 0.082 3.918 13 C -0.412 4.412 14 H 0.129 0.871 15 C -0.146 4.146 16 N -0.398 5.398 17 Si 0.824 3.176 18 H -0.195 1.195 19 H -0.253 1.253 20 H -0.192 1.192 21 C -0.138 4.138 22 C 0.051 3.949 23 N -0.413 5.413 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.170 0.830 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.105 0.895 31 H 0.167 0.833 32 H 0.227 0.773 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.747 -4.751 -3.857 7.745 hybrid contribution 1.333 0.619 -0.027 1.470 sum -3.414 -4.132 -3.883 6.619 Atomic orbital electron populations 1.22656 0.78245 1.01776 1.02091 1.86029 1.22015 1.25086 1.89742 1.19236 0.87448 0.85030 1.03668 1.67014 1.39924 0.98524 1.17339 1.22185 0.92055 0.92574 1.00317 1.18842 0.92854 0.91335 0.98773 1.19778 1.00812 0.92585 1.01337 1.67753 1.26179 1.00366 1.17108 1.22513 1.01643 0.95362 1.07549 1.23213 0.93410 0.97881 0.91293 1.67695 1.31900 1.01862 1.24314 1.19203 0.90459 0.90375 0.91734 1.19701 0.99783 1.03945 1.17792 0.87060 1.26505 0.99428 0.96917 0.91726 1.69588 1.19918 1.33145 1.17104 0.84700 0.72749 0.79091 0.81036 1.19538 1.25328 1.19192 1.21153 1.01170 0.88638 1.02835 1.17597 0.87710 0.88477 1.01086 1.42136 1.08103 1.04876 1.86221 0.92866 0.89573 0.92794 0.83012 0.84518 0.84488 0.89522 0.83325 0.77302 0.77271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 10.38 101.05 1.05 1.66 16 2 O -0.32 -5.13 9.73 -18.63 -0.18 -5.31 16 3 C 0.23 4.24 7.52 -16.78 -0.13 4.11 16 4 N -0.51 -9.75 9.18 -12.75 -0.12 -9.87 16 5 C 0.09 1.75 10.83 -17.07 -0.18 1.56 16 6 C -0.01 -0.30 5.26 -104.76 -0.55 -0.85 16 7 C 0.00 0.09 6.43 -82.12 -0.53 -0.44 16 8 N -0.40 -9.05 10.31 -8.98 -0.09 -9.15 16 9 C -0.11 -2.27 11.22 -17.13 -0.19 -2.46 16 10 C 0.11 2.28 11.22 -17.29 -0.19 2.08 16 11 N -0.54 -12.92 5.39 -10.72 -0.06 -12.98 16 12 C 0.21 5.08 6.16 -84.55 -0.52 4.56 16 13 C -0.38 -9.56 7.81 -37.93 -0.30 -9.86 16 14 H 0.11 2.85 5.98 -52.48 -0.31 2.54 16 15 C 0.08 1.96 5.52 -17.32 -0.10 1.87 16 16 N -0.78 -18.96 13.92 55.56 0.77 -18.19 16 17 Si 0.99 22.34 25.45 -169.99 -4.33 18.01 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.32 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.24 6.69 56.52 0.38 -5.86 16 21 C -0.11 -2.14 7.61 -38.71 -0.29 -2.43 16 22 C 0.16 2.84 6.80 -83.45 -0.57 2.28 16 23 N -0.87 -12.59 9.09 32.57 0.30 -12.29 16 24 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.15 2.92 8.06 -52.48 -0.42 2.50 16 28 H 0.14 2.32 8.06 -52.49 -0.42 1.89 16 29 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.29 6.52 8.29 -40.82 -0.34 6.19 16 31 H 0.15 3.03 6.85 -52.48 -0.36 2.67 16 32 H 0.40 5.16 8.85 -40.82 -0.36 4.80 16 33 H 0.40 5.08 8.20 -40.82 -0.33 4.74 16 LS Contribution 287.41 15.07 4.33 4.33 Total: -1.00 -28.48 287.41 -4.94 -33.42 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -3.06 Total: 9.93 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.50 Total: 2.07 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: 0.80 Total: -62.46 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.18 Total: -5.31 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.33 Total: 18.01 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.48 -4.94 -33.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239623935.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.615 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds