Wall clock time and date at job start Mon Mar 30 2020 01:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35645 * 116.99915 * 2 1 4 4 N 1.32273 * 119.56001 * 0.29455 * 3 2 1 5 5 C 1.31720 * 121.88430 * 180.33818 * 4 3 2 6 6 C 1.39663 * 120.75602 * 359.65617 * 5 4 3 7 7 C 1.47654 * 120.48192 * 180.02562 * 6 5 4 8 8 N 1.32915 * 120.25578 * 316.25654 * 7 6 5 9 9 C 1.31992 * 120.07140 * 179.97438 * 8 7 6 10 10 C 1.39201 * 120.60156 * 0.02562 * 9 8 7 11 11 N 1.31606 * 120.51775 * 359.97438 * 10 9 8 12 12 C 1.33983 * 119.90465 * 359.70129 * 11 10 9 13 13 C 1.40732 * 120.29556 * 180.27419 * 12 11 10 14 14 H 1.08005 * 119.99982 * 163.06460 * 13 12 11 15 15 C 1.40141 * 120.00039 * 343.07219 * 13 12 11 16 16 N 1.30694 * 120.00270 * 170.64347 * 15 13 12 17 17 Si 1.86808 * 119.99842 * 350.63677 * 15 13 12 18 18 H 1.48503 * 109.46798 * 84.72682 * 17 15 13 19 19 H 1.48502 * 109.47001 * 204.72230 * 17 15 13 20 20 H 1.48500 * 109.47223 * 324.72734 * 17 15 13 21 21 C 1.40260 * 119.03905 * 0.02562 * 6 5 4 22 22 C 1.38551 * 118.29595 * 0.02562 * 21 6 5 23 23 N 1.39940 * 120.42985 * 180.02562 * 22 21 6 24 24 H 1.08998 * 109.47348 * 59.99682 * 1 2 3 25 25 H 1.09002 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47139 * 299.99777 * 1 2 3 27 27 H 1.08006 * 119.62465 * 179.67866 * 5 4 3 28 28 H 1.08002 * 119.70065 * 179.97438 * 9 8 7 29 29 H 1.08001 * 119.74326 * 179.97438 * 10 9 8 30 30 H 0.96999 * 120.00403 * 179.97438 * 16 15 13 31 31 H 1.08009 * 120.85300 * 179.97438 * 21 6 5 32 32 H 0.96996 * 119.99973 * 0.02562 * 23 22 21 33 33 H 0.96997 * 120.00173 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 7 1.3158 2.3124 0.0059 5 6 1.8657 3.5093 -0.0004 6 6 3.2544 3.6573 -0.0065 7 6 3.8643 5.0019 -0.0131 8 7 3.3824 5.9521 -0.8078 9 6 3.9301 7.1530 -0.8103 10 6 5.0144 7.4391 0.0145 11 7 5.5104 6.5159 0.8106 12 6 4.9662 5.2918 0.8344 13 6 5.4863 4.3001 1.6867 14 1 4.9011 3.4208 1.9125 15 6 6.7635 4.4534 2.2427 16 7 7.1746 3.6318 3.1723 17 14 7.8786 5.8322 1.6550 18 1 7.5561 7.0789 2.3948 19 1 9.2954 5.4624 1.9023 20 1 7.6706 6.0515 0.2011 21 6 4.0614 2.5100 -0.0064 22 6 3.4414 1.2710 -0.0007 23 7 4.2033 0.0972 0.0001 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.2354 4.3864 -0.0005 28 1 3.5339 7.9205 -1.4587 29 1 5.4521 8.4263 0.0009 30 1 8.0588 3.7377 3.5568 31 1 5.1384 2.5904 -0.0115 32 1 5.1719 0.1478 -0.0029 33 1 3.7628 -0.7670 0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239623935.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:01 Heat of formation + Delta-G solvation = 7.336445 kcal Electronic energy + Delta-G solvation = -20262.290740 eV Core-core repulsion = 17093.791806 eV Total energy + Delta-G solvation = -3168.498934 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.69383 -40.90940 -38.64143 -36.15856 -35.92746 -34.72247 -33.71974 -31.05212 -29.90747 -28.49407 -27.62141 -25.39188 -24.17961 -23.55667 -22.54915 -19.87441 -19.19969 -18.70817 -18.03370 -17.90405 -17.06712 -16.87616 -16.45085 -16.23308 -15.75414 -15.29728 -14.90328 -14.81108 -14.53626 -14.37011 -13.99643 -13.59506 -13.31525 -13.13366 -12.79391 -12.62288 -12.45695 -12.22244 -11.99979 -11.68313 -11.43373 -11.11850 -10.73974 -10.33099 -9.65211 -9.35335 -8.99788 -8.27054 -6.77055 -0.06655 0.49193 0.57408 0.90291 1.44280 1.53579 1.59905 2.20690 2.34119 2.54877 2.91227 2.91668 3.49540 3.55631 3.61229 3.97173 4.16274 4.20756 4.28935 4.45085 4.51627 4.57758 4.60442 4.72704 4.81060 4.83811 5.04438 5.15548 5.46037 5.55036 5.68961 5.97051 6.17765 6.34928 6.41790 6.56466 6.96912 7.02733 7.05644 7.50152 7.93622 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.006663 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.321161 B = 4201.324750 C = 5266.583863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.319 6.319 3 C 0.229 3.771 4 N -0.508 5.508 5 C 0.079 3.921 6 C -0.035 4.035 7 C -0.008 4.008 8 N -0.417 5.417 9 C -0.096 4.096 10 C 0.100 3.900 11 N -0.558 5.558 12 C 0.194 3.806 13 C -0.407 4.407 14 H 0.094 0.906 15 C 0.057 3.943 16 N -0.804 5.804 17 Si 1.036 2.964 18 H -0.276 1.276 19 H -0.310 1.310 20 H -0.281 1.281 21 C -0.117 4.117 22 C 0.160 3.840 23 N -0.855 5.855 24 H 0.052 0.948 25 H 0.125 0.875 26 H 0.049 0.951 27 H 0.156 0.844 28 H 0.179 0.821 29 H 0.180 0.820 30 H 0.303 0.697 31 H 0.138 0.862 32 H 0.407 0.593 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 -4.141 -5.028 7.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.227 6.227 3 C 0.045 3.955 4 N -0.230 5.230 5 C -0.078 4.078 6 C -0.039 4.039 7 C -0.155 4.155 8 N -0.129 5.129 9 C -0.256 4.256 10 C -0.066 4.066 11 N -0.280 5.280 12 C 0.070 3.930 13 C -0.438 4.438 14 H 0.111 0.889 15 C -0.166 4.166 16 N -0.427 5.427 17 Si 0.868 3.132 18 H -0.202 1.202 19 H -0.241 1.241 20 H -0.208 1.208 21 C -0.149 4.149 22 C 0.053 3.947 23 N -0.398 5.398 24 H 0.070 0.930 25 H 0.144 0.856 26 H 0.067 0.933 27 H 0.173 0.827 28 H 0.196 0.804 29 H 0.197 0.803 30 H 0.113 0.887 31 H 0.156 0.844 32 H 0.237 0.763 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.294 -4.628 -4.806 8.517 hybrid contribution 1.337 0.582 0.139 1.465 sum -3.957 -4.045 -4.668 7.335 Atomic orbital electron populations 1.22965 0.76249 1.04328 1.01801 1.86041 1.23917 1.23500 1.89270 1.19450 0.87774 0.85633 1.02690 1.67038 1.39965 0.98463 1.17524 1.22175 0.91605 0.93139 1.00897 1.18901 0.93552 0.91072 1.00361 1.19997 1.00700 0.93618 1.01175 1.67859 1.26733 1.01120 1.17198 1.23290 1.00436 0.95332 1.06555 1.23929 0.93406 0.98920 0.90318 1.67681 1.32635 1.02163 1.25490 1.19347 0.91080 0.90702 0.91906 1.19569 1.00421 1.04137 1.19653 0.88858 1.26911 0.99897 0.97983 0.91774 1.69579 1.20815 1.34226 1.18074 0.84057 0.72368 0.77334 0.79421 1.20214 1.24080 1.20751 1.21053 1.00643 0.89288 1.03881 1.17617 0.88163 0.88888 1.00056 1.42094 1.08495 1.04313 1.84875 0.92959 0.85650 0.93268 0.82676 0.80439 0.80312 0.88651 0.84389 0.76321 0.75943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 10.38 113.37 1.18 2.13 16 2 O -0.32 -9.60 9.73 -89.59 -0.87 -10.47 16 3 C 0.23 8.26 7.52 85.01 0.64 8.90 16 4 N -0.51 -19.31 9.18 -307.12 -2.82 -22.13 16 5 C 0.08 3.22 10.83 85.05 0.92 4.14 16 6 C -0.03 -1.51 5.26 -19.95 -0.10 -1.61 16 7 C -0.01 -0.39 6.43 42.40 0.27 -0.12 16 8 N -0.42 -18.29 10.31 -182.34 -1.88 -20.17 16 9 C -0.10 -3.65 11.22 84.90 0.95 -2.70 16 10 C 0.10 3.93 11.22 84.96 0.95 4.88 16 11 N -0.56 -26.41 5.39 -187.83 -1.01 -27.42 16 12 C 0.19 9.67 6.16 40.36 0.25 9.91 16 13 C -0.41 -20.98 7.81 23.34 0.18 -20.80 16 14 H 0.09 5.02 5.98 -2.91 -0.02 5.00 16 15 C 0.06 2.84 5.52 85.32 0.47 3.31 16 16 N -0.80 -39.99 13.92 21.86 0.30 -39.69 16 17 Si 1.04 45.98 25.45 68.60 1.75 47.73 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.31 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.28 -12.98 6.69 99.48 0.67 -12.31 16 21 C -0.12 -4.80 7.61 22.84 0.17 -4.63 16 22 C 0.16 5.76 6.80 38.30 0.26 6.02 16 23 N -0.85 -23.80 9.09 -50.87 -0.46 -24.26 16 24 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 25 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 27 H 0.16 6.01 8.06 -2.91 -0.02 5.99 16 28 H 0.18 5.22 8.06 -2.91 -0.02 5.20 16 29 H 0.18 5.35 8.06 -2.91 -0.02 5.33 16 30 H 0.30 13.56 8.29 -92.71 -0.77 12.79 16 31 H 0.14 5.87 6.85 -2.91 -0.02 5.85 16 32 H 0.41 10.23 8.85 -92.71 -0.82 9.41 16 33 H 0.41 9.69 8.20 -92.71 -0.76 8.93 16 Total: -1.00 -61.09 287.41 0.71 -60.38 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: -0.44 Total: 26.60 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.15 Total: 9.43 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -5.87 Total: -133.67 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.87 Total: -10.47 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.75 Total: 47.73 kcal Total: -61.09 0.71 -60.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239623935.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.713 kcal (2) G-P(sol) polarization free energy of solvation -61.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds