Wall clock time and date at job start Mon Mar 30 2020 01:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36201 * 119.94340 * 2 1 4 4 C 1.40954 * 119.88647 * 180.02562 * 3 2 1 5 5 C 1.40975 * 120.10514 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00224 * 330.07413 * 5 4 3 7 7 C 1.39956 * 119.99535 * 150.07458 * 5 4 3 8 8 N 1.30836 * 119.99667 * 161.72362 * 7 5 4 9 9 Si 1.86794 * 120.00329 * 341.72604 * 7 5 4 10 10 H 1.48506 * 109.47324 * 95.41509 * 9 7 5 11 11 H 1.48499 * 109.47324 * 215.41705 * 9 7 5 12 12 H 1.48496 * 109.47041 * 335.41883 * 9 7 5 13 13 C 1.40979 * 119.78332 * 359.97438 * 4 3 2 14 14 C 1.36174 * 119.88616 * 0.25574 * 13 4 3 15 15 C 1.40027 * 119.94569 * 180.02562 * 2 1 3 16 16 C 1.47792 * 119.88872 * 359.97438 * 15 2 1 17 17 C 1.40211 * 120.49553 * 244.72084 * 16 15 2 18 18 C 1.37952 * 118.40852 * 179.73249 * 17 16 15 19 19 C 1.39354 * 119.31836 * 0.52259 * 18 17 16 20 20 N 1.38702 * 119.52852 * 179.76555 * 19 18 17 21 21 N 1.32554 * 120.94743 * 359.73991 * 19 18 17 22 22 C 1.31907 * 121.73234 * 0.02562 * 21 19 18 23 23 F 1.35105 * 119.70756 * 179.97438 * 22 21 19 24 24 H 1.09002 * 109.46898 * 90.00547 * 1 2 3 25 25 H 1.09002 * 109.46887 * 209.99660 * 1 2 3 26 26 H 1.08994 * 109.47311 * 330.00480 * 1 2 3 27 27 H 1.08001 * 120.05450 * 0.04284 * 3 2 1 28 28 H 0.96994 * 119.99840 * 179.97438 * 8 7 5 29 29 H 1.07993 * 120.05953 * 179.97438 * 13 4 3 30 30 H 1.07998 * 119.94400 * 179.72255 * 14 13 4 31 31 H 1.08002 * 120.79543 * 359.97438 * 17 16 15 32 32 H 1.08005 * 120.34122 * 180.28651 * 18 17 16 33 33 H 0.96996 * 120.00593 * 179.97438 * 20 19 18 34 34 H 0.97005 * 119.99461 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1802 0.0000 4 6 3.5964 1.1788 -0.0005 5 6 4.3047 2.3977 0.0000 6 1 3.8750 3.2722 -0.4658 7 6 5.5647 2.4744 0.6043 8 7 6.3718 3.4615 0.3109 9 14 6.0943 1.1676 1.8294 10 1 6.8944 0.1295 1.1312 11 1 6.9174 1.7930 2.8955 12 1 4.8920 0.5412 2.4356 13 6 4.2954 -0.0455 -0.0005 14 6 3.6066 -1.2201 -0.0053 15 6 2.2060 -1.2133 -0.0005 16 6 1.4633 -2.4911 -0.0005 17 6 1.5522 -3.3658 1.0917 18 6 0.8365 -4.5443 1.0487 19 6 0.0625 -4.8320 -0.0739 20 7 -0.6550 -6.0180 -0.1238 21 7 0.0018 -3.9884 -1.0944 22 6 0.6661 -2.8488 -1.0930 23 9 0.5750 -2.0194 -2.1556 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6468 2.1155 0.0007 28 1 7.2450 3.5149 0.7299 29 1 5.3753 -0.0517 -0.0014 30 1 4.1412 -2.1585 -0.0098 31 1 2.1633 -3.1209 1.9479 32 1 0.8786 -5.2386 1.8749 33 1 -1.1962 -6.2251 -0.9016 34 1 -0.6155 -6.6404 0.6193 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239828538.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:53 Heat of formation + Delta-G solvation = 5.035983 kcal Electronic energy + Delta-G solvation = -20001.430927 eV Core-core repulsion = 16812.912276 eV Total energy + Delta-G solvation = -3188.518651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.50881 -39.89332 -38.04473 -34.84303 -33.77809 -32.39002 -31.81310 -30.61478 -28.40087 -26.24223 -24.94071 -23.24584 -22.47028 -20.69780 -20.18556 -18.00383 -17.64940 -17.05936 -16.22591 -15.72077 -15.64228 -15.38315 -14.99735 -14.14713 -13.57325 -13.48551 -13.26843 -13.23689 -12.91260 -12.78733 -12.69605 -12.25693 -11.83641 -11.57733 -11.40285 -10.80804 -10.64305 -10.47957 -10.13943 -10.02387 -9.66215 -9.52840 -9.50386 -9.13257 -7.87697 -7.64318 -7.26832 -7.03114 -4.52538 1.28584 1.50145 2.50413 2.71542 3.07580 3.19001 3.26284 3.28665 3.91849 3.93949 4.25204 4.40273 4.95185 5.09391 5.25001 5.37680 5.60193 5.84111 5.87662 5.96311 6.12015 6.13727 6.26046 6.40541 6.51481 6.54128 6.75997 6.81087 6.89084 7.13177 7.17630 7.31297 7.45264 7.61866 7.76912 7.85514 8.07341 8.13326 8.29354 8.62441 8.73875 9.98490 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.005140 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.225960 B = 5446.646606 C = 5949.511221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.024 4.024 3 C -0.210 4.210 4 C 0.102 3.898 5 C -0.439 4.439 6 H 0.092 0.908 7 C 0.083 3.917 8 N -0.802 5.802 9 Si 0.914 3.086 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.242 1.242 13 C -0.244 4.244 14 C -0.047 4.047 15 C -0.197 4.197 16 C -0.112 4.112 17 C -0.013 4.013 18 C -0.248 4.248 19 C 0.416 3.584 20 N -0.854 5.854 21 N -0.579 5.579 22 C 0.347 3.653 23 F -0.106 7.106 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.287 0.713 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.402 0.598 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 -14.194 3.297 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.024 4.024 3 C -0.229 4.229 4 C 0.099 3.901 5 C -0.467 4.467 6 H 0.110 0.890 7 C -0.137 4.137 8 N -0.425 5.425 9 Si 0.741 3.259 10 H -0.196 1.196 11 H -0.219 1.219 12 H -0.165 1.165 13 C -0.263 4.263 14 C -0.066 4.066 15 C -0.198 4.198 16 C -0.118 4.118 17 C -0.039 4.039 18 C -0.273 4.273 19 C 0.179 3.821 20 N -0.398 5.398 21 N -0.303 5.303 22 C 0.194 3.806 23 F -0.085 7.085 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.231 0.769 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.723 -14.112 2.552 16.785 hybrid contribution 0.703 -0.436 0.848 1.185 sum -8.020 -14.548 3.400 16.956 Atomic orbital electron populations 1.20771 0.93560 1.01100 1.01286 1.19157 0.93688 0.92634 0.96909 1.20537 0.93793 0.95692 1.12884 1.17763 0.91905 0.92573 0.87874 1.19521 0.99428 0.97059 1.30645 0.88999 1.26241 0.94898 0.96141 0.96385 1.69704 1.07603 1.30087 1.35123 0.86260 0.79917 0.80053 0.79704 1.19561 1.21856 1.16544 1.20658 0.98129 0.92829 1.14731 1.20308 0.92499 0.96593 0.97177 1.17506 0.92004 0.89071 1.21251 1.19294 1.01129 0.97770 0.93571 1.21457 0.94596 0.91113 0.96707 1.21228 1.05188 1.01075 0.99804 1.17729 0.89582 0.86317 0.88457 1.42059 1.53740 1.19536 1.24503 1.66097 1.28432 1.05426 1.30327 1.17956 0.93446 0.85395 0.83768 1.91609 1.94218 1.68305 1.54355 0.92001 0.93162 0.92353 0.88033 0.90291 0.88159 0.88855 0.84137 0.85016 0.76945 0.76250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 8.69 36.00 0.31 -1.66 16 2 C -0.02 -0.50 5.71 -104.69 -0.60 -1.10 16 3 C -0.21 -4.88 9.36 -39.29 -0.37 -5.24 16 4 C 0.10 2.56 5.10 -106.79 -0.55 2.02 16 5 C -0.44 -11.70 9.54 -37.90 -0.36 -12.06 16 6 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 7 C 0.08 2.14 5.40 -17.33 -0.09 2.05 16 8 N -0.80 -21.00 13.93 55.55 0.77 -20.23 16 9 Si 0.91 20.38 24.51 -169.99 -4.17 16.22 16 10 H -0.27 -5.84 6.70 56.52 0.38 -5.46 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.24 -5.50 6.87 56.52 0.39 -5.11 16 13 C -0.24 -5.83 7.10 -39.29 -0.28 -6.11 16 14 C -0.05 -1.02 9.67 -39.64 -0.38 -1.41 16 15 C -0.20 -4.08 5.06 -104.64 -0.53 -4.61 16 16 C -0.11 -2.01 4.13 -104.63 -0.43 -2.44 16 17 C -0.01 -0.20 9.88 -38.95 -0.38 -0.58 16 18 C -0.25 -3.08 9.91 -39.27 -0.39 -3.47 16 19 C 0.42 5.55 7.74 -155.10 -1.20 4.35 16 20 N -0.85 -7.61 9.06 31.14 0.28 -7.33 16 21 N -0.58 -9.59 10.39 -12.42 -0.13 -9.72 16 22 C 0.35 6.33 7.56 -16.90 -0.13 6.20 16 23 F -0.11 -2.07 15.69 2.25 0.04 -2.03 16 24 H 0.06 1.08 7.56 -51.93 -0.39 0.69 16 25 H 0.05 0.86 6.90 -51.93 -0.36 0.50 16 26 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 27 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 28 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 29 H 0.10 2.38 4.73 -52.49 -0.25 2.13 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.40 3.26 8.95 -40.82 -0.37 2.89 16 34 H 0.41 2.33 8.82 -40.82 -0.36 1.98 16 LS Contribution 292.71 15.07 4.41 4.41 Total: -1.00 -28.85 292.71 -7.60 -36.45 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -3.43 Total: 6.27 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -5.38 Total: -24.05 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.93 Total: -37.27 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.17 Total: 16.22 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.85 -7.60 -36.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239828538.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.489 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds