Wall clock time and date at job start Mon Mar 30 2020 01:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36201 * 119.94340 * 2 1 4 4 C 1.40954 * 119.88647 * 180.02562 * 3 2 1 5 5 C 1.40975 * 120.10514 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00224 * 330.07413 * 5 4 3 7 7 C 1.39956 * 119.99535 * 150.07458 * 5 4 3 8 8 N 1.30836 * 119.99667 * 161.72362 * 7 5 4 9 9 Si 1.86794 * 120.00329 * 341.72604 * 7 5 4 10 10 H 1.48506 * 109.47324 * 95.41509 * 9 7 5 11 11 H 1.48499 * 109.47324 * 215.41705 * 9 7 5 12 12 H 1.48496 * 109.47041 * 335.41883 * 9 7 5 13 13 C 1.40979 * 119.78332 * 359.97438 * 4 3 2 14 14 C 1.36174 * 119.88616 * 0.25574 * 13 4 3 15 15 C 1.40027 * 119.94569 * 180.02562 * 2 1 3 16 16 C 1.47792 * 119.88872 * 359.97438 * 15 2 1 17 17 C 1.40211 * 120.49553 * 244.72084 * 16 15 2 18 18 C 1.37952 * 118.40852 * 179.73249 * 17 16 15 19 19 C 1.39354 * 119.31836 * 0.52259 * 18 17 16 20 20 N 1.38702 * 119.52852 * 179.76555 * 19 18 17 21 21 N 1.32554 * 120.94743 * 359.73991 * 19 18 17 22 22 C 1.31907 * 121.73234 * 0.02562 * 21 19 18 23 23 F 1.35105 * 119.70756 * 179.97438 * 22 21 19 24 24 H 1.09002 * 109.46898 * 90.00547 * 1 2 3 25 25 H 1.09002 * 109.46887 * 209.99660 * 1 2 3 26 26 H 1.08994 * 109.47311 * 330.00480 * 1 2 3 27 27 H 1.08001 * 120.05450 * 0.04284 * 3 2 1 28 28 H 0.96994 * 119.99840 * 179.97438 * 8 7 5 29 29 H 1.07993 * 120.05953 * 179.97438 * 13 4 3 30 30 H 1.07998 * 119.94400 * 179.72255 * 14 13 4 31 31 H 1.08002 * 120.79543 * 359.97438 * 17 16 15 32 32 H 1.08005 * 120.34122 * 180.28651 * 18 17 16 33 33 H 0.96996 * 120.00593 * 179.97438 * 20 19 18 34 34 H 0.97005 * 119.99461 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1802 0.0000 4 6 3.5964 1.1788 -0.0005 5 6 4.3047 2.3977 0.0000 6 1 3.8750 3.2722 -0.4658 7 6 5.5647 2.4744 0.6043 8 7 6.3718 3.4615 0.3109 9 14 6.0943 1.1676 1.8294 10 1 6.8944 0.1295 1.1312 11 1 6.9174 1.7930 2.8955 12 1 4.8920 0.5412 2.4356 13 6 4.2954 -0.0455 -0.0005 14 6 3.6066 -1.2201 -0.0053 15 6 2.2060 -1.2133 -0.0005 16 6 1.4633 -2.4911 -0.0005 17 6 1.5522 -3.3658 1.0917 18 6 0.8365 -4.5443 1.0487 19 6 0.0625 -4.8320 -0.0739 20 7 -0.6550 -6.0180 -0.1238 21 7 0.0018 -3.9884 -1.0944 22 6 0.6661 -2.8488 -1.0930 23 9 0.5750 -2.0194 -2.1556 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6468 2.1155 0.0007 28 1 7.2450 3.5149 0.7299 29 1 5.3753 -0.0517 -0.0014 30 1 4.1412 -2.1585 -0.0098 31 1 2.1633 -3.1209 1.9479 32 1 0.8786 -5.2386 1.8749 33 1 -1.1962 -6.2251 -0.9016 34 1 -0.6155 -6.6404 0.6193 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239828538.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:52 Heat of formation + Delta-G solvation = -12.860174 kcal Electronic energy + Delta-G solvation = -20002.206963 eV Core-core repulsion = 16812.912276 eV Total energy + Delta-G solvation = -3189.294687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.89614 -41.09070 -39.72138 -36.21831 -35.27518 -33.72166 -33.42326 -32.14188 -29.79915 -27.90430 -26.52927 -24.40622 -23.83717 -22.41466 -21.89423 -19.16346 -19.01583 -18.64753 -17.78868 -17.09086 -16.86873 -16.59585 -16.36882 -15.85324 -15.29994 -14.89790 -14.60192 -14.54048 -14.42157 -14.26658 -14.00424 -13.94970 -13.54280 -13.07442 -13.02258 -12.58090 -12.34776 -11.99379 -11.72510 -11.60966 -11.28084 -11.04127 -10.72942 -10.65736 -9.51788 -9.28712 -8.92419 -8.61035 -6.48834 0.08457 0.32178 0.79019 0.91994 1.27886 1.42589 1.51200 2.13736 2.26561 2.54083 2.77839 3.18498 3.46221 3.82215 3.93834 4.20067 4.24361 4.26559 4.45448 4.56118 4.70418 4.80201 4.85379 4.99359 5.02909 5.04421 5.09339 5.29351 5.36365 5.56713 5.67670 5.86613 5.91822 6.04254 6.23937 6.30916 6.39051 6.40550 6.73910 6.83015 7.22344 8.15718 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.005140 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.225960 B = 5446.646606 C = 5949.511221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.033 4.033 3 C -0.224 4.224 4 C 0.083 3.917 5 C -0.481 4.481 6 H 0.055 0.945 7 C 0.048 3.952 8 N -0.846 5.846 9 Si 0.968 3.032 10 H -0.257 1.257 11 H -0.277 1.277 12 H -0.249 1.249 13 C -0.254 4.254 14 C -0.055 4.055 15 C -0.170 4.170 16 C -0.144 4.144 17 C -0.009 4.009 18 C -0.228 4.228 19 C 0.419 3.581 20 N -0.830 5.830 21 N -0.600 5.600 22 C 0.331 3.669 23 F -0.125 7.125 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.295 0.705 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.157 0.843 32 H 0.177 0.823 33 H 0.408 0.592 34 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.895 -18.686 5.038 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.033 4.033 3 C -0.243 4.243 4 C 0.080 3.920 5 C -0.510 4.510 6 H 0.074 0.926 7 C -0.167 4.167 8 N -0.472 5.472 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.172 1.172 13 C -0.273 4.273 14 C -0.073 4.073 15 C -0.172 4.172 16 C -0.150 4.150 17 C -0.034 4.034 18 C -0.253 4.253 19 C 0.179 3.821 20 N -0.376 5.376 21 N -0.326 5.326 22 C 0.179 3.821 23 F -0.104 7.104 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.140 0.860 31 H 0.175 0.825 32 H 0.194 0.806 33 H 0.238 0.762 34 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -10.172 -18.649 4.296 21.673 hybrid contribution 0.827 0.601 0.265 1.056 sum -9.345 -18.048 4.561 20.829 Atomic orbital electron populations 1.20732 0.91042 1.02321 1.01808 1.19574 0.95707 0.92164 0.95856 1.20707 0.93478 0.96781 1.13345 1.17898 0.92769 0.92600 0.88737 1.19460 1.01062 0.96855 1.33654 0.92637 1.26906 0.94487 0.97996 0.97348 1.69731 1.08478 1.32013 1.36956 0.85444 0.79419 0.78067 0.77961 1.18256 1.20329 1.17245 1.20758 0.98286 0.93118 1.15123 1.20652 0.93190 0.96923 0.96581 1.17915 0.92051 0.90504 1.16725 1.19138 1.02900 0.97567 0.95430 1.21653 0.94685 0.91075 0.96005 1.21625 1.02845 1.00507 1.00294 1.18175 0.89265 0.86683 0.87937 1.42093 1.52009 1.18087 1.25403 1.66126 1.29079 1.05482 1.31887 1.17993 0.94365 0.86110 0.83609 1.91559 1.94493 1.69062 1.55306 0.91742 0.91958 0.91039 0.88187 0.89449 0.88329 0.85990 0.82504 0.80565 0.76162 0.73981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.52 8.69 71.24 0.62 -2.90 16 2 C -0.03 -1.38 5.71 -19.91 -0.11 -1.49 16 3 C -0.22 -10.70 9.36 22.46 0.21 -10.49 16 4 C 0.08 4.30 5.10 -21.27 -0.11 4.19 16 5 C -0.48 -27.43 9.54 23.36 0.22 -27.21 16 6 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 7 C 0.05 2.57 5.40 85.26 0.46 3.03 16 8 N -0.85 -46.61 13.93 21.83 0.30 -46.30 16 9 Si 0.97 42.52 24.51 68.60 1.68 44.20 16 10 H -0.26 -10.66 6.70 99.48 0.67 -10.00 16 11 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.25 -11.05 6.87 99.48 0.68 -10.37 16 13 C -0.25 -12.13 7.10 22.46 0.16 -11.97 16 14 C -0.06 -2.31 9.67 22.23 0.21 -2.09 16 15 C -0.17 -6.80 5.06 -19.87 -0.10 -6.90 16 16 C -0.14 -4.76 4.13 -19.87 -0.08 -4.85 16 17 C -0.01 -0.23 9.88 22.68 0.22 0.00 16 18 C -0.23 -4.35 9.91 22.47 0.22 -4.12 16 19 C 0.42 9.19 7.74 133.17 1.03 10.22 16 20 N -0.83 -10.48 9.06 -55.40 -0.50 -10.99 16 21 N -0.60 -18.07 10.39 -193.20 -2.01 -20.07 16 22 C 0.33 11.39 7.56 85.08 0.64 12.03 16 23 F -0.13 -4.81 15.69 44.97 0.71 -4.10 16 24 H 0.06 2.19 7.56 -2.39 -0.02 2.18 16 25 H 0.06 1.99 6.90 -2.39 -0.02 1.97 16 26 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 27 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 28 H 0.30 14.52 8.30 -92.71 -0.77 13.75 16 29 H 0.10 4.68 4.73 -2.91 -0.01 4.66 16 30 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 31 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 33 H 0.41 4.76 8.95 -92.71 -0.83 3.93 16 34 H 0.43 2.32 8.82 -92.70 -0.82 1.51 16 Total: -1.00 -66.33 292.71 3.24 -63.09 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.54 Total: 16.72 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 3.60 Total: -42.55 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -2.20 Total: -77.36 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.71 Total: -4.10 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.68 Total: 44.20 kcal Total: -66.33 3.24 -63.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239828538.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.233 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds