Wall clock time and date at job start Mon Mar 30 2020 01:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36213 * 120.05386 * 2 1 4 4 C 1.40021 * 120.11069 * 180.29550 * 3 2 1 5 5 C 1.47791 * 119.88907 * 179.69304 * 4 3 2 6 6 C 1.40204 * 120.49205 * 129.70720 * 5 4 3 7 7 C 1.37953 * 118.40902 * 179.75858 * 6 5 4 8 8 C 1.39353 * 119.31722 * 0.53588 * 7 6 5 9 9 N 1.38703 * 119.52941 * 179.72656 * 8 7 6 10 10 N 1.32550 * 120.94810 * 359.69495 * 8 7 6 11 11 C 1.31915 * 121.73390 * 0.03080 * 10 8 7 12 12 F 1.35094 * 119.71213 * 179.97438 * 11 10 8 13 13 C 1.40066 * 120.22112 * 359.67812 * 4 3 2 14 14 C 1.36176 * 120.11240 * 0.02562 * 13 4 3 15 15 C 1.40948 * 120.06051 * 179.69149 * 2 1 3 16 16 C 1.40969 * 120.10759 * 0.02562 * 15 2 1 17 17 H 1.08010 * 119.99944 * 29.51508 * 16 15 2 18 18 C 1.39949 * 120.00099 * 209.51715 * 16 15 2 19 19 N 1.30838 * 120.00215 * 196.99591 * 18 16 15 20 20 Si 1.86800 * 120.00014 * 16.99069 * 18 16 15 21 21 H 1.48504 * 109.46937 * 270.00189 * 20 18 16 22 22 H 1.48501 * 109.47124 * 30.00053 * 20 18 16 23 23 H 1.48501 * 109.47240 * 150.00401 * 20 18 16 24 24 H 1.09000 * 109.47589 * 270.30049 * 1 2 3 25 25 H 1.09001 * 109.47577 * 30.30599 * 1 2 3 26 26 H 1.09005 * 109.47265 * 150.30325 * 1 2 3 27 27 H 1.07998 * 119.94425 * 0.02562 * 3 2 1 28 28 H 1.08006 * 120.80014 * 359.97438 * 6 5 4 29 29 H 1.08000 * 120.34492 * 180.25878 * 7 6 5 30 30 H 0.96995 * 120.00132 * 179.97438 * 9 8 7 31 31 H 0.97002 * 119.99954 * 359.96956 * 9 8 7 32 32 H 1.07996 * 119.94414 * 179.97438 * 13 4 3 33 33 H 1.07995 * 120.05503 * 179.97438 * 14 13 4 34 34 H 0.97003 * 119.99926 * 355.43200 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.1790 0.0000 4 6 3.5893 1.1804 -0.0062 5 6 4.3245 2.4625 -0.0131 6 6 5.3521 2.6982 0.9111 7 6 6.0133 3.9080 0.8630 8 6 5.6354 4.8548 -0.0871 9 7 6.2934 6.0749 -0.1357 10 7 4.6565 4.6061 -0.9454 11 6 4.0016 3.4610 -0.9381 12 9 3.0102 3.2509 -1.8315 13 6 4.2956 -0.0292 -0.0057 14 6 3.6228 -1.2131 0.0003 15 6 2.2130 -1.2199 0.0066 16 6 1.5117 -2.4428 0.0126 17 1 0.5371 -2.5087 -0.4483 18 6 2.0783 -3.5713 0.6158 19 7 1.6091 -4.7625 0.3457 20 14 3.5046 -3.3772 1.8064 21 1 4.7859 -3.4406 1.0583 22 1 3.3985 -2.0665 2.4964 23 1 3.4633 -4.4702 2.8108 24 1 -0.3634 0.0054 1.0276 25 1 -0.3634 0.8872 -0.5186 26 1 -0.3634 -0.8927 -0.5091 27 1 1.6491 2.1143 0.0004 28 1 5.6220 1.9493 1.6411 29 1 6.8126 4.1210 1.5574 30 1 6.0362 6.7387 -0.7944 31 1 7.0108 6.2642 0.4892 32 1 5.3755 -0.0229 -0.0110 33 1 4.1682 -2.1452 0.0003 34 1 0.8272 -4.8589 -0.2201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239828592.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:02 Heat of formation + Delta-G solvation = 0.397403 kcal Electronic energy + Delta-G solvation = -19840.967242 eV Core-core repulsion = 16652.247447 eV Total energy + Delta-G solvation = -3188.719795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.51203 -39.84603 -38.10310 -34.88786 -33.73492 -32.55054 -31.52388 -30.68732 -28.24550 -26.28106 -24.52036 -23.22869 -22.40848 -21.29914 -19.41327 -18.24267 -17.99862 -17.55391 -15.95194 -15.66936 -15.61509 -15.28086 -14.53594 -14.37511 -14.13235 -13.40673 -13.22156 -13.11459 -12.96497 -12.78959 -12.29166 -12.13893 -11.80942 -11.39215 -11.14920 -10.94209 -10.56346 -10.41752 -10.03663 -9.94238 -9.58085 -9.49864 -9.31890 -9.03885 -8.03763 -7.67856 -7.47134 -7.10533 -4.56611 1.27166 1.47632 2.58212 2.70545 3.16276 3.27779 3.32192 3.51058 3.93988 3.97115 4.26424 4.47668 4.94967 5.10108 5.23862 5.34809 5.60546 5.91042 5.99150 6.03081 6.12456 6.23462 6.37151 6.51760 6.56881 6.72965 6.76612 6.83016 6.97405 7.18814 7.32527 7.37597 7.43800 7.58323 7.66893 7.79680 7.93731 8.14657 8.33101 8.48922 8.70229 9.92626 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.005143 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.948564 B = 5442.985241 C = 6143.673117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.188 4.188 3 C -0.049 4.049 4 C -0.195 4.195 5 C -0.110 4.110 6 C -0.019 4.019 7 C -0.244 4.244 8 C 0.412 3.588 9 N -0.854 5.854 10 N -0.576 5.576 11 C 0.339 3.661 12 F -0.108 7.108 13 C -0.050 4.050 14 C -0.248 4.248 15 C 0.107 3.893 16 C -0.502 4.502 17 H 0.082 0.918 18 C 0.041 3.959 19 N -0.811 5.811 20 Si 1.075 2.925 21 H -0.276 1.276 22 H -0.261 1.261 23 H -0.290 1.290 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.401 0.599 31 H 0.407 0.593 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 13.434 2.541 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.189 4.189 3 C -0.067 4.067 4 C -0.197 4.197 5 C -0.116 4.116 6 C -0.044 4.044 7 C -0.269 4.269 8 C 0.175 3.825 9 N -0.399 5.399 10 N -0.300 5.300 11 C 0.186 3.814 12 F -0.087 7.087 13 C -0.068 4.068 14 C -0.267 4.267 15 C 0.104 3.896 16 C -0.530 4.530 17 H 0.100 0.900 18 C -0.179 4.179 19 N -0.433 5.433 20 Si 0.901 3.099 21 H -0.203 1.203 22 H -0.186 1.186 23 H -0.218 1.218 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.230 0.770 31 H 0.237 0.763 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.428 13.045 2.789 15.779 hybrid contribution -0.964 0.556 -0.800 1.370 sum 7.464 13.601 1.990 15.641 Atomic orbital electron populations 1.20420 0.93077 1.00459 1.00268 1.19438 0.94728 0.92720 1.11988 1.20259 0.92515 0.96283 0.97644 1.17665 0.92291 0.89534 1.20228 1.19370 0.99778 0.95477 0.97007 1.21405 0.92152 0.95471 0.95367 1.21222 1.06301 0.95626 1.03709 1.17712 0.88361 0.86978 0.89479 1.42041 1.40969 1.15223 1.41672 1.66078 1.11947 1.23189 1.28783 1.17856 0.86732 0.89387 0.87447 1.91603 1.57264 1.94023 1.65784 1.20331 0.97289 0.91870 0.97339 1.20775 0.94559 0.96718 1.14635 1.17688 0.91396 0.92723 0.87775 1.20713 1.05402 0.94534 1.32311 0.89980 1.27361 1.02014 0.91166 0.97349 1.70545 1.19465 1.24392 1.28932 0.83556 0.74068 0.76738 0.75495 1.20278 1.18575 1.21794 0.93331 0.94094 0.92292 0.88925 0.84074 0.84990 0.76983 0.76269 0.88657 0.87521 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 9.61 36.00 0.35 -1.40 16 2 C -0.19 -4.35 5.90 -104.33 -0.62 -4.96 16 3 C -0.05 -1.06 8.44 -39.64 -0.33 -1.39 16 4 C -0.20 -4.09 5.36 -104.64 -0.56 -4.65 16 5 C -0.11 -2.01 5.48 -104.63 -0.57 -2.59 16 6 C -0.02 -0.28 9.66 -38.95 -0.38 -0.65 16 7 C -0.24 -3.06 9.91 -39.27 -0.39 -3.45 16 8 C 0.41 5.59 7.74 -155.10 -1.20 4.39 16 9 N -0.85 -7.78 9.06 31.14 0.28 -7.50 16 10 N -0.58 -9.72 10.39 -12.42 -0.13 -9.85 16 11 C 0.34 6.29 8.30 -16.90 -0.14 6.15 16 12 F -0.11 -2.13 15.92 2.25 0.04 -2.09 16 13 C -0.05 -1.06 9.47 -39.64 -0.38 -1.44 16 14 C -0.25 -5.84 7.18 -39.29 -0.28 -6.12 16 15 C 0.11 2.67 5.12 -106.80 -0.55 2.13 16 16 C -0.50 -13.02 8.77 -37.91 -0.33 -13.36 16 17 H 0.08 2.18 6.50 -52.48 -0.34 1.84 16 18 C 0.04 1.05 5.42 -17.33 -0.09 0.95 16 19 N -0.81 -21.24 13.66 55.55 0.76 -20.48 16 20 Si 1.08 23.69 24.90 -169.99 -4.23 19.46 16 21 H -0.28 -5.77 6.45 56.52 0.36 -5.40 16 22 H -0.26 -5.71 7.02 56.52 0.40 -5.31 16 23 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 26 H 0.06 1.23 6.28 -51.93 -0.33 0.91 16 27 H 0.09 1.89 7.78 -52.49 -0.41 1.48 16 28 H 0.14 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.40 3.33 8.95 -40.82 -0.37 2.97 16 31 H 0.41 2.40 8.82 -40.82 -0.36 2.04 16 32 H 0.10 1.77 8.05 -52.49 -0.42 1.34 16 33 H 0.11 2.48 4.47 -52.49 -0.23 2.24 16 34 H 0.29 7.30 8.73 -40.82 -0.36 6.94 16 LS Contribution 292.74 15.07 4.41 4.41 Total: -1.00 -28.49 292.74 -7.69 -36.18 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -3.34 Total: 6.25 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -5.47 Total: -26.38 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.91 Total: -37.83 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.23 Total: 19.46 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.49 -7.69 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239828592.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.578 kcal (2) G-P(sol) polarization free energy of solvation -28.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds