Wall clock time and date at job start Mon Mar 30 2020 01:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36213 * 120.05386 * 2 1 4 4 C 1.40021 * 120.11069 * 180.29550 * 3 2 1 5 5 C 1.47791 * 119.88907 * 179.69304 * 4 3 2 6 6 C 1.40204 * 120.49205 * 129.70720 * 5 4 3 7 7 C 1.37953 * 118.40902 * 179.75858 * 6 5 4 8 8 C 1.39353 * 119.31722 * 0.53588 * 7 6 5 9 9 N 1.38703 * 119.52941 * 179.72656 * 8 7 6 10 10 N 1.32550 * 120.94810 * 359.69495 * 8 7 6 11 11 C 1.31915 * 121.73390 * 0.03080 * 10 8 7 12 12 F 1.35094 * 119.71213 * 179.97438 * 11 10 8 13 13 C 1.40066 * 120.22112 * 359.67812 * 4 3 2 14 14 C 1.36176 * 120.11240 * 0.02562 * 13 4 3 15 15 C 1.40948 * 120.06051 * 179.69149 * 2 1 3 16 16 C 1.40969 * 120.10759 * 0.02562 * 15 2 1 17 17 H 1.08010 * 119.99944 * 29.51508 * 16 15 2 18 18 C 1.39949 * 120.00099 * 209.51715 * 16 15 2 19 19 N 1.30838 * 120.00215 * 196.99591 * 18 16 15 20 20 Si 1.86800 * 120.00014 * 16.99069 * 18 16 15 21 21 H 1.48504 * 109.46937 * 270.00189 * 20 18 16 22 22 H 1.48501 * 109.47124 * 30.00053 * 20 18 16 23 23 H 1.48501 * 109.47240 * 150.00401 * 20 18 16 24 24 H 1.09000 * 109.47589 * 270.30049 * 1 2 3 25 25 H 1.09001 * 109.47577 * 30.30599 * 1 2 3 26 26 H 1.09005 * 109.47265 * 150.30325 * 1 2 3 27 27 H 1.07998 * 119.94425 * 0.02562 * 3 2 1 28 28 H 1.08006 * 120.80014 * 359.97438 * 6 5 4 29 29 H 1.08000 * 120.34492 * 180.25878 * 7 6 5 30 30 H 0.96995 * 120.00132 * 179.97438 * 9 8 7 31 31 H 0.97002 * 119.99954 * 359.96956 * 9 8 7 32 32 H 1.07996 * 119.94414 * 179.97438 * 13 4 3 33 33 H 1.07995 * 120.05503 * 179.97438 * 14 13 4 34 34 H 0.97003 * 119.99926 * 355.43200 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.1790 0.0000 4 6 3.5893 1.1804 -0.0062 5 6 4.3245 2.4625 -0.0131 6 6 5.3521 2.6982 0.9111 7 6 6.0133 3.9080 0.8630 8 6 5.6354 4.8548 -0.0871 9 7 6.2934 6.0749 -0.1357 10 7 4.6565 4.6061 -0.9454 11 6 4.0016 3.4610 -0.9381 12 9 3.0102 3.2509 -1.8315 13 6 4.2956 -0.0292 -0.0057 14 6 3.6228 -1.2131 0.0003 15 6 2.2130 -1.2199 0.0066 16 6 1.5117 -2.4428 0.0126 17 1 0.5371 -2.5087 -0.4483 18 6 2.0783 -3.5713 0.6158 19 7 1.6091 -4.7625 0.3457 20 14 3.5046 -3.3772 1.8064 21 1 4.7859 -3.4406 1.0583 22 1 3.3985 -2.0665 2.4964 23 1 3.4633 -4.4702 2.8108 24 1 -0.3634 0.0054 1.0276 25 1 -0.3634 0.8872 -0.5186 26 1 -0.3634 -0.8927 -0.5091 27 1 1.6491 2.1143 0.0004 28 1 5.6220 1.9493 1.6411 29 1 6.8126 4.1210 1.5574 30 1 6.0362 6.7387 -0.7944 31 1 7.0108 6.2642 0.4892 32 1 5.3755 -0.0229 -0.0110 33 1 4.1682 -2.1452 0.0003 34 1 0.8272 -4.8589 -0.2201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239828592.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:01 Heat of formation + Delta-G solvation = -16.951948 kcal Electronic energy + Delta-G solvation = -19841.719566 eV Core-core repulsion = 16652.247447 eV Total energy + Delta-G solvation = -3189.472119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.92338 -41.05238 -39.79753 -36.22431 -35.28903 -33.93407 -33.05532 -32.24490 -29.64982 -27.95679 -26.11782 -24.44501 -23.82016 -22.99407 -21.08150 -20.06630 -19.18344 -18.66740 -17.42023 -17.06130 -16.61707 -16.52235 -16.21741 -16.08540 -15.81503 -14.84607 -14.57378 -14.52516 -14.42701 -14.06813 -13.97735 -13.78812 -13.42135 -13.01993 -12.84536 -12.65374 -12.09921 -12.03683 -11.66455 -11.44575 -11.10876 -10.95442 -10.73296 -10.64114 -9.62993 -9.42131 -9.23437 -8.55282 -6.48583 0.01646 0.28516 0.89623 0.92985 1.39980 1.57916 1.79600 2.20990 2.25960 2.59394 2.81033 3.17182 3.45734 3.80685 3.91828 4.17533 4.28891 4.29808 4.44286 4.56682 4.76721 4.80569 4.91109 4.99836 5.04069 5.08586 5.17990 5.29620 5.48438 5.57734 5.61486 5.83946 5.89668 6.00478 6.15727 6.30473 6.38909 6.44286 6.67362 6.85674 7.21877 8.01076 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.005143 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.948564 B = 5442.985241 C = 6143.673117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.201 4.201 3 C -0.061 4.061 4 C -0.168 4.168 5 C -0.145 4.145 6 C -0.011 4.011 7 C -0.225 4.225 8 C 0.415 3.585 9 N -0.831 5.831 10 N -0.600 5.600 11 C 0.321 3.679 12 F -0.126 7.126 13 C -0.057 4.057 14 C -0.255 4.255 15 C 0.082 3.918 16 C -0.535 4.535 17 H 0.055 0.945 18 C 0.010 3.990 19 N -0.844 5.844 20 Si 1.105 2.895 21 H -0.256 1.256 22 H -0.259 1.259 23 H -0.284 1.284 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.105 0.895 28 H 0.162 0.838 29 H 0.179 0.821 30 H 0.408 0.592 31 H 0.427 0.573 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.156 16.863 3.924 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.202 4.202 3 C -0.080 4.080 4 C -0.169 4.169 5 C -0.152 4.152 6 C -0.036 4.036 7 C -0.250 4.250 8 C 0.176 3.824 9 N -0.376 5.376 10 N -0.325 5.325 11 C 0.169 3.831 12 F -0.106 7.106 13 C -0.076 4.076 14 C -0.274 4.274 15 C 0.080 3.920 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.204 4.204 19 N -0.468 5.468 20 Si 0.926 3.074 21 H -0.182 1.182 22 H -0.184 1.184 23 H -0.211 1.211 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.123 0.877 28 H 0.180 0.820 29 H 0.196 0.804 30 H 0.238 0.762 31 H 0.260 0.740 32 H 0.147 0.853 33 H 0.125 0.875 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.862 16.524 4.168 20.763 hybrid contribution -1.833 0.019 -1.260 2.224 sum 10.029 16.544 2.908 19.563 Atomic orbital electron populations 1.20405 0.91887 1.00699 1.00908 1.19815 0.96090 0.92827 1.11446 1.20497 0.93432 0.96171 0.97881 1.18061 0.92172 0.91060 1.15654 1.19272 1.02003 0.94441 0.99454 1.21664 0.90551 0.96870 0.94543 1.21651 1.06150 0.93950 1.03218 1.18193 0.87281 0.88360 0.88574 1.42082 1.40270 1.13629 1.41644 1.66107 1.13350 1.22699 1.30387 1.17969 0.87072 0.90225 0.87820 1.91552 1.58202 1.94252 1.66549 1.20667 0.99054 0.91024 0.96812 1.20940 0.94083 0.97838 1.14547 1.17884 0.92406 0.92811 0.88936 1.20615 1.05098 0.95947 1.34817 0.92647 1.28337 1.03530 0.90680 0.97829 1.70616 1.20407 1.24906 1.30908 0.83214 0.72950 0.76811 0.74440 1.18185 1.18385 1.21082 0.92468 0.91949 0.93830 0.87743 0.82048 0.80392 0.76203 0.73955 0.85318 0.87478 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.44 9.61 71.23 0.68 -2.76 16 2 C -0.20 -9.42 5.90 -19.67 -0.12 -9.54 16 3 C -0.06 -2.63 8.44 22.23 0.19 -2.45 16 4 C -0.17 -6.70 5.36 -19.87 -0.11 -6.81 16 5 C -0.15 -4.88 5.48 -19.87 -0.11 -4.99 16 6 C -0.01 -0.28 9.66 22.68 0.22 -0.06 16 7 C -0.23 -4.32 9.91 22.47 0.22 -4.10 16 8 C 0.42 9.32 7.74 133.17 1.03 10.35 16 9 N -0.83 -10.80 9.06 -55.40 -0.50 -11.31 16 10 N -0.60 -18.52 10.39 -193.20 -2.01 -20.52 16 11 C 0.32 11.30 8.30 85.08 0.71 12.01 16 12 F -0.13 -4.93 15.92 44.97 0.72 -4.21 16 13 C -0.06 -2.32 9.47 22.23 0.21 -2.11 16 14 C -0.26 -11.88 7.18 22.46 0.16 -11.72 16 15 C 0.08 4.19 5.12 -21.27 -0.11 4.08 16 16 C -0.54 -29.38 8.77 23.35 0.20 -29.17 16 17 H 0.06 3.21 6.50 -2.91 -0.02 3.19 16 18 C 0.01 0.51 5.42 85.26 0.46 0.97 16 19 N -0.84 -46.60 13.66 21.83 0.30 -46.30 16 20 Si 1.10 48.09 24.90 68.60 1.71 49.80 16 21 H -0.26 -10.22 6.45 99.48 0.64 -9.58 16 22 H -0.26 -11.05 7.02 99.48 0.70 -10.35 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 24 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 26 H 0.04 1.93 6.28 -2.38 -0.01 1.91 16 27 H 0.10 4.17 7.78 -2.91 -0.02 4.15 16 28 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.41 4.92 8.95 -92.71 -0.83 4.09 16 31 H 0.43 2.43 8.82 -92.71 -0.82 1.61 16 32 H 0.13 4.29 8.05 -2.91 -0.02 4.27 16 33 H 0.11 4.91 4.47 -2.91 -0.01 4.90 16 34 H 0.28 15.19 8.73 -92.71 -0.81 14.38 16 Total: -1.00 -65.12 292.74 3.27 -61.85 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.59 Total: 17.00 kcal Atomic # 6 Polarization: -49.95 SS G_CDS: 3.65 Total: -46.30 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -2.21 Total: -78.13 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.72 Total: -4.21 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.71 Total: 49.80 kcal Total: -65.12 3.27 -61.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239828592.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.897 kcal (2) G-P(sol) polarization free energy of solvation -65.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds