Wall clock time and date at job start Mon Mar 30 2020 01:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38307 * 120.36056 * 2 1 4 4 N 1.31891 * 121.03168 * 179.70243 * 3 2 1 5 5 C 1.31747 * 121.84465 * 0.56120 * 4 3 2 6 6 C 1.50704 * 119.70016 * 179.71344 * 5 4 3 7 7 C 1.39300 * 120.59985 * 359.43686 * 5 4 3 8 8 C 1.48392 * 120.53839 * 180.29679 * 7 5 4 9 9 C 1.39009 * 120.41721 * 244.99914 * 8 7 5 10 10 C 1.40951 * 118.12724 * 179.97438 * 9 8 7 11 11 C 1.41376 * 120.57355 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99907 * 203.54838 * 11 10 9 13 13 C 1.39901 * 120.00088 * 23.55021 * 11 10 9 14 14 N 1.30861 * 119.99687 * 17.59757 * 13 11 10 15 15 Si 1.86803 * 119.99855 * 197.59660 * 13 11 10 16 16 H 1.48490 * 109.47376 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46678 * 120.00356 * 15 13 11 18 18 H 1.48494 * 109.46943 * 239.99612 * 15 13 11 19 19 C 1.40805 * 118.85236 * 0.02562 * 10 9 8 20 20 N 1.31498 * 120.69759 * 0.02562 * 19 10 9 21 21 C 1.32164 * 122.07671 * 359.72449 * 20 19 10 22 22 F 1.35101 * 119.45848 * 180.26728 * 21 20 19 23 23 C 1.38416 * 120.35306 * 179.97438 * 2 1 3 24 24 H 1.08995 * 109.47426 * 270.03203 * 1 2 3 25 25 H 1.09005 * 109.46747 * 30.02819 * 1 2 3 26 26 H 1.09000 * 109.47468 * 150.01915 * 1 2 3 27 27 H 1.08000 * 119.48605 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46995 * 269.73345 * 6 5 4 29 29 H 1.08996 * 109.47382 * 149.72536 * 6 5 4 30 30 H 1.09008 * 109.47022 * 29.72692 * 6 5 4 31 31 H 1.08005 * 120.93873 * 359.95960 * 9 8 7 32 32 H 0.97004 * 119.99781 * 179.97438 * 14 13 11 33 33 H 1.08003 * 119.64813 * 180.02562 * 19 10 9 34 34 H 1.07995 * 120.84506 * 0.04890 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1934 0.0000 4 7 3.5249 1.2089 0.0059 5 6 4.2331 0.0979 0.0010 6 6 5.7384 0.1720 0.0016 7 6 3.6033 -1.1445 0.0011 8 6 4.4023 -2.3949 0.0023 9 6 4.3552 -3.2613 -1.0838 10 6 5.1340 -4.4349 -1.0319 11 6 5.1245 -5.3524 -2.1075 12 1 5.3892 -6.3857 -1.9383 13 6 4.7723 -4.9218 -3.3912 14 7 4.7871 -3.6455 -3.6802 15 14 4.2809 -6.1686 -4.6925 16 1 4.3444 -7.5360 -4.1171 17 1 2.8959 -5.8879 -5.1489 18 1 5.2110 -6.0727 -5.8461 19 6 5.9207 -4.6784 0.1102 20 7 5.9302 -3.8275 1.1127 21 6 5.2164 -2.7152 1.0960 22 9 5.2700 -1.8755 2.1529 23 6 2.2065 -1.1944 0.0005 24 1 -0.3634 0.0006 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6636 2.1273 -0.0004 28 1 6.1016 0.1897 -1.0260 29 1 6.1448 -0.6988 0.5158 30 1 6.0573 1.0790 0.5153 31 1 3.7389 -3.0414 -1.9431 32 1 4.5432 -3.3470 -4.5703 33 1 6.5227 -5.5735 0.1633 34 1 1.6862 -2.1408 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239905985.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:50 Heat of formation + Delta-G solvation = 0.402690 kcal Electronic energy + Delta-G solvation = -20249.956595 eV Core-core repulsion = 17061.237029 eV Total energy + Delta-G solvation = -3188.719566 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.66516 -39.99453 -38.24740 -34.29923 -33.91846 -33.15357 -30.54928 -29.56804 -28.73111 -25.61162 -25.22144 -23.71877 -21.88423 -21.59358 -20.31213 -17.56222 -16.69710 -16.47702 -15.94580 -15.72061 -15.27536 -14.75310 -14.55595 -14.14023 -13.49316 -13.09617 -12.94622 -12.76039 -12.47593 -12.37760 -12.30664 -12.03603 -11.87002 -11.70738 -11.58402 -11.52628 -11.32225 -11.20622 -10.78928 -10.27951 -9.58158 -9.45533 -9.11530 -8.57876 -8.51959 -8.08718 -7.63872 -7.09763 -4.70076 1.38488 1.62322 2.26916 2.59643 2.90943 2.94089 2.97468 3.68621 4.08965 4.27816 4.66458 4.96820 5.04333 5.09909 5.24603 5.26259 5.34027 5.52490 5.63738 5.81973 5.93770 6.03877 6.05314 6.12697 6.20622 6.43321 6.50160 6.53643 6.60171 6.74152 6.83607 6.86721 7.10161 7.37383 7.54458 7.68251 8.13254 8.35413 8.39947 8.40704 9.14898 9.81501 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.006704 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.965885 B = 4175.409920 C = 5102.495908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.151 4.151 3 C 0.089 3.911 4 N -0.485 5.485 5 C 0.140 3.860 6 C -0.105 4.105 7 C -0.059 4.059 8 C -0.097 4.097 9 C -0.097 4.097 10 C 0.056 3.944 11 C -0.437 4.437 12 H 0.090 0.910 13 C 0.072 3.928 14 N -0.781 5.781 15 Si 0.915 3.085 16 H -0.257 1.257 17 H -0.270 1.270 18 H -0.271 1.271 19 C 0.010 3.990 20 N -0.486 5.486 21 C 0.162 3.838 22 F -0.144 7.144 23 C -0.064 4.064 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.149 0.851 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.287 0.713 33 H 0.139 0.861 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 3.877 0.456 7.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.153 4.153 3 C -0.069 4.069 4 N -0.194 5.194 5 C 0.003 3.997 6 C -0.162 4.162 7 C -0.061 4.061 8 C -0.101 4.101 9 C -0.122 4.122 10 C 0.051 3.949 11 C -0.466 4.466 12 H 0.108 0.892 13 C -0.148 4.148 14 N -0.404 5.404 15 Si 0.738 3.262 16 H -0.180 1.180 17 H -0.195 1.195 18 H -0.196 1.196 19 C -0.152 4.152 20 N -0.198 5.198 21 C 0.008 3.992 22 F -0.124 7.124 23 C -0.089 4.089 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.166 0.834 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.155 0.845 32 H 0.098 0.902 33 H 0.157 0.843 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.273 4.733 1.033 7.161 hybrid contribution -1.174 -0.946 -1.249 1.958 sum -6.448 3.787 -0.217 7.481 Atomic orbital electron populations 1.20653 0.90569 1.02739 1.02161 1.20752 0.97193 0.94078 1.03248 1.22490 0.89871 0.97020 0.97492 1.67426 1.07876 1.31020 1.13029 1.21320 0.96822 0.87305 0.94283 1.20774 0.88935 1.03536 1.02970 1.19573 0.93280 0.93679 0.99585 1.18947 1.00125 0.95221 0.95799 1.21689 0.99836 0.94412 0.96296 1.18487 0.90103 0.92788 0.93538 1.19618 1.38490 0.97017 0.91488 0.89233 1.26043 0.92456 0.96071 1.00209 1.69786 1.32205 1.15868 1.22574 0.86130 0.79131 0.81309 0.79599 1.17992 1.19451 1.19620 1.22304 1.02522 0.99088 0.91262 1.66288 1.20462 1.02457 1.30574 1.17433 1.04722 0.91047 0.85988 1.91408 1.95982 1.68887 1.56155 1.21541 0.92999 0.98091 0.96312 0.91308 0.91525 0.91513 0.83393 0.90575 0.89898 0.91100 0.84451 0.90169 0.84328 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.03 36.01 0.36 -0.78 16 2 C -0.15 -2.30 5.89 -104.53 -0.62 -2.91 16 3 C 0.09 1.39 10.85 -17.50 -0.19 1.21 16 4 N -0.49 -9.02 10.26 -9.21 -0.09 -9.11 16 5 C 0.14 2.80 6.66 -82.23 -0.55 2.25 16 6 C -0.10 -1.97 9.66 36.01 0.35 -1.62 16 7 C -0.06 -1.21 5.03 -104.75 -0.53 -1.73 16 8 C -0.10 -2.20 4.65 -104.75 -0.49 -2.69 16 9 C -0.10 -2.32 8.52 -38.27 -0.33 -2.64 16 10 C 0.06 1.35 5.59 -106.71 -0.60 0.75 16 11 C -0.44 -10.24 9.08 -37.77 -0.34 -10.59 16 12 H 0.09 1.97 7.90 -52.48 -0.41 1.56 16 13 C 0.07 1.62 5.17 -17.34 -0.09 1.53 16 14 N -0.78 -18.19 10.92 55.54 0.61 -17.59 16 15 Si 0.91 16.70 29.59 -169.99 -5.03 11.67 16 16 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 17 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 18 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 19 C 0.01 0.23 10.96 -16.72 -0.18 0.05 16 20 N -0.49 -11.85 10.33 -12.59 -0.13 -11.98 16 21 C 0.16 3.86 6.93 -16.73 -0.12 3.74 16 22 F -0.14 -3.35 15.55 2.25 0.04 -3.32 16 23 C -0.06 -1.14 9.58 -38.94 -0.37 -1.52 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 27 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.08 1.69 4.74 -51.93 -0.25 1.45 16 30 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 31 H 0.14 3.36 6.19 -52.48 -0.32 3.03 16 32 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 33 H 0.14 2.93 8.06 -52.48 -0.42 2.50 16 34 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -26.83 298.51 -7.30 -34.13 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -3.50 Total: 6.66 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -3.69 Total: -14.96 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.38 Total: -38.68 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.04 Total: -3.32 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.83 -7.30 -34.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239905985.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.537 kcal (2) G-P(sol) polarization free energy of solvation -26.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds